| Golorize: a cytoscape plug-in for network visualization with gene ontology-based layout and coloring (2008) | |||||||||||||||
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| Summary: We have implemented a graph layout algorithm that exposes Gene Ontology (GO) class structure on the network nodes. It can be used in conjunction with BiNGO plug-in to Cytoscape, which finds the GO categories over-represented in a given network. Our plug-in, named GOlorize, first high-lights the class members with category-specific color-coding and then constructs an enhanced visualization of the network using a class-directed layout algorithm | |||||||||||||||
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