| The CRASSS plug-in for integrating annotation data with hierarchical clustering results (2004) | |||||||||||||
Abstract | |||||||||||||
| Summary: We describe an algorithm for finding the most statistically significant non-overlapping subtrees of a hierarchical clustering of gene expression data with respect to a set of secondary data labels on genes. The method is implemented as a Java plug-in for a commercial gene expression analysis program (GeneSpring). Availability: The JAR (Java Archive) file needed to use this plug-in and instructions on its installation and use can be obtained from http://www.cis.upenn.edu/~buehler/CRASSS.html. Versions of this plugin are available for GeneSpring 5.0.2 and GeneSpring 6.1.1, and have been tested under Windows XP. | |||||||||||||
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