| Implementing Protein Seed-Based Comparison Algorithm on the SGI RASC-100 Platform (2009) | |||||||||||||||
Abstract | |||||||||||||||
| This paper describes a parallel FPGA implementation of a genomic sequence comparison algorithm for finding similarities between a large set of protein sequences and full genomes. Results comparable to the tblastn program from the BLAST family are provided while the computation is improved by a factor 19. The performances are mainly due to the parallelization of a critical code section on the SGI RASC-100 accelerator. | |||||||||||||||
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