Kel, A.E., Niehof, M., Matys, V., Zemlin, R., Borlak, J.
We report an application of machine learning algorithms that enables prediction of the functional context of transcription factor binding sites in the human genome. We demonstrate that our method...
Kel, A.E., Niehof, M., Matys, V., Zemlin, R., Borlak, J.
We report an application of machine learning algorithms that enables prediction of the functional context of transcription factor binding sites in the human genome. We demonstrate that our method...
TRANSFAC(R) and its module TRANSCompel(R): transcriptional gene regulation in eukaryotes (2006)
Matys, V., Kel-Margoulis, O. V., Fricke, E., Liebich, I., Land, S., Barre-Dirrie, A., ...
The TRANSFAC® database on transcription factors, their binding sites, nucleotide distribution matrices and regulated genes as well as the complementing database TRANSCompel® on composite elements...
TRANSFAC Ò and its module TRANSCompel Ò: (2005)
V. Matys, E. Fricke, I. Liebich, A. Barre-dirrie, I. Reuter, ...
transcriptional gene regulation in eukaryotes
P-Match: transcription factor binding site search by combining patterns and weight matrices (2005)
Chekmenev, D. S., Haid, C., Kel, A. E.
P-Match is a new tool for identifying transcription factor (TF) binding sites in DNA sequences. It combines pattern matching and weight matrix approaches thus providing higher accuracy of recognition...
MATCHTM: a tool for searching transcription factor binding sites in DNA sequences (2003)
Kel, A.E., Gößling, E., Reuter, I., Cheremushkin, E., Kel-Margoulis, O.V., Wingender, E.
MatchTM is a weight matrix-based tool for searching putative transcription factor binding sites in DNA sequences. MatchTM is closely interconnected and distributed together with the TRANSFAC®...
TRANSFAC(R): transcriptional regulation, from patterns to profiles (2003)
Matys, V., Fricke, E., Geffers, R., Gößling, E., Haubrock, M., Hehl, R., ...
The TRANSFAC® database on eukaryotic transcriptional regulation, comprising data on transcription factors, their target genes and regulatory binding sites, has been extended and further developed,...
Transcription Regulatory Regions Database (TRRD): its status in 2000 (2000)
Kolchanov, N. A., Podkolodnaya, O. A., Ananko, E. A., Ignatieva, E. V., Stepanenko, I. L., Kel-Margoulis, O. V., ...
Transcription Regulatory Regions Database (TRRD) has been developed for accumulation of experimental information on the structure–function features of regulatory regions of eukaryotic genes. Each...
Databases on transcriptional regulation: TRANSFAC, TRRD and COMPEL (1998)
Heinemeyer Wingender, T. Heinemeyer, E. Wingender, I. Reuter, H. Hermjakob, A. E. Kel, ...
TRANSFAC, TRRD (Transcription Regulatory Region Database) and COMPEL are databases which store information about transcriptional regulation in eukaryotic cells. The three databases provide distinct...
Eukaryotic promoter recognition by binding sites for transcription factors (1995)
Kondrakhin, Y.V., Kel, A.E., Kolchanov, N.A., Romashchenko, A.G., Milanesi, L.
A method for identification of eukaryotic promoters by localization of binding sites for transcription factors has been suggested. The binding sites for a range of transcription factors have been...
Kel, A.E., Ponomarenko, M.P., Likhachev, E.A., Orlov, Yu.L., Ischenko, I.V., Milanesi, L., ...
We developed the computer system SITEVIDEO for analysis and recognition of the functional sites in DNA and RNA molecules. It reveals contextual features essential for site function and thus enable...
V. Matys, E. Fricke, R. Geffers, E. Gößling, M. Haubrock, R. Hehl, ...
The TRANSFAC 1 database on eukaryotic transcriptional regulation, comprising data on transcription factors, their target genes and regulatory binding sites, has been extended and further developed,...
Transcription Regulatory Regions Database (TRRD): its status in 2000
Kolchanov, N. A., Podkolodnaya, O. A., Ananko, E. A., Ignatieva, E. V., Stepanenko, I. L., Kel-Margoulis, O. V., ...
Transcription Regulatory Regions Database (TRRD) has been developed for accumulation of experimental information on the structure–function features of regulatory regions of eukaryotic genes. Each...
TRANSFAC, TRRD and COMPEL: towards a federated database system on transcriptional regulation.
Wingender, E, Kel, A E, Kel, O V, Karas, H, Heinemeyer, T, Dietze, P, ...
Three databases that provide data on transcriptional regulation are described. TRANSFAC is a database on transcription factors and their DNA binding sites. TRRD (Transcription Regulatory Region...
Databases on transcriptional regulation: TRANSFAC, TRRD and COMPEL.
Heinemeyer, T, Wingender, E, Reuter, I, Hermjakob, H, Kel, A E, Kel, O V, ...
TRANSFAC, TRRD (Transcription Regulatory Region Database) and COMPEL are databases which store information about transcriptional regulation in eukaryotic cells. The three databases provide distinct...
Transcription Regulatory Regions Database (TRRD):its status in 1999.
Kolchanov, N A, Ananko, E A, Podkolodnaya, O A, Ignatieva, E V, Stepanenko, I L, Kel-Margoulis, O V, ...
The Transcription Regulatory Regions Database (TRRD) is a curated database designed for accumulation of experimental data on extended regulatory regions of eukaryotic genes, the regulatory elements...
Expanding the TRANSFAC database towards an expert system of regulatory molecular mechanisms.
Heinemeyer, T, Chen, X, Karas, H, Kel, A E, Kel, O V, Liebich, I, ...
TRANSFAC is a database on transcription factors, their genomic binding sites and DNA-binding profiles. In addition to being updated and extended by new features, it has been complemented now by a...
TRANSFAC®: transcriptional regulation, from patterns to profiles
Matys, V., Fricke, E., Geffers, R., Gößling, E., Haubrock, M., Hehl, R., ...
The TRANSFAC® database on eukaryotic transcriptional regulation, comprising data on transcription factors, their target genes and regulatory binding sites, has been extended and further developed,...
MATCHTM: a tool for searching transcription factor binding sites in DNA sequences
Kel, A.E., Gößling, E., Reuter, I., Cheremushkin, E., Kel-Margoulis, O.V., Wingender, E.
MatchTM is a weight matrix-based tool for searching putative transcription factor binding sites in DNA sequences. MatchTM is closely interconnected and distributed together with the TRANSFAC®...
A compilation of composite regulatory elements affecting gene transcription in vertebrates.
Kel, O V, Romaschenko, A G, Kel, A E, Wingender, E, Kolchanov, N A
Over the past years, evidence has been accumulating for a fundamental role of protein-protein interactions between transcription factors in gene-specific transcription regulation. Many of these...
P-Match: transcription factor binding site search by combining patterns and weight matrices
Chekmenev, D. S., Haid, C., Kel, A. E.
P-Match is a new tool for identifying transcription factor (TF) binding sites in DNA sequences. It combines pattern matching and weight matrix approaches thus providing higher accuracy of recognition...
TRANSFAC® and its module TRANSCompel®: transcriptional gene regulation in eukaryotes
Matys, V., Kel-Margoulis, O. V., Fricke, E., Liebich, I., Land, S., Barre-Dirrie, A., ...
The TRANSFAC® database on transcription factors, their binding sites, nucleotide distribution matrices and regulated genes as well as the complementing database TRANSCompel® on composite elements...
Transcription Regulatory Regions Database (TRRD): its status in 2000
Kolchanov, N. A., Podkolodnaya, O. A., Ananko, E. A., Ignatieva, E. V., Stepanenko, I. L., Kel-Margoulis, O. V., ...
Transcription Regulatory Regions Database (TRRD) has been developed for accumulation of experimental information on the structure–function features of regulatory regions of eukaryotic genes. Each...
TRANSFAC, TRRD and COMPEL: towards a federated database system on transcriptional regulation.
Wingender, E, Kel, A E, Kel, O V, Karas, H, Heinemeyer, T, Dietze, P, ...
Three databases that provide data on transcriptional regulation are described. TRANSFAC is a database on transcription factors and their DNA binding sites. TRRD (Transcription Regulatory Region...
Databases on transcriptional regulation: TRANSFAC, TRRD and COMPEL.
Heinemeyer, T, Wingender, E, Reuter, I, Hermjakob, H, Kel, A E, Kel, O V, ...
TRANSFAC, TRRD (Transcription Regulatory Region Database) and COMPEL are databases which store information about transcriptional regulation in eukaryotic cells. The three databases provide distinct...
Transcription Regulatory Regions Database (TRRD):its status in 1999.
Kolchanov, N A, Ananko, E A, Podkolodnaya, O A, Ignatieva, E V, Stepanenko, I L, Kel-Margoulis, O V, ...
The Transcription Regulatory Regions Database (TRRD) is a curated database designed for accumulation of experimental data on extended regulatory regions of eukaryotic genes, the regulatory elements...
Expanding the TRANSFAC database towards an expert system of regulatory molecular mechanisms.
Heinemeyer, T, Chen, X, Karas, H, Kel, A E, Kel, O V, Liebich, I, ...
TRANSFAC is a database on transcription factors, their genomic binding sites and DNA-binding profiles. In addition to being updated and extended by new features, it has been complemented now by a...
TRANSFAC®: transcriptional regulation, from patterns to profiles
Matys, V., Fricke, E., Geffers, R., Gößling, E., Haubrock, M., Hehl, R., ...
The TRANSFAC® database on eukaryotic transcriptional regulation, comprising data on transcription factors, their target genes and regulatory binding sites, has been extended and further developed,...
MATCHTM: a tool for searching transcription factor binding sites in DNA sequences
Kel, A.E., Gößling, E., Reuter, I., Cheremushkin, E., Kel-Margoulis, O.V., Wingender, E.
MatchTM is a weight matrix-based tool for searching putative transcription factor binding sites in DNA sequences. MatchTM is closely interconnected and distributed together with the TRANSFAC®...
A compilation of composite regulatory elements affecting gene transcription in vertebrates.
Kel, O V, Romaschenko, A G, Kel, A E, Wingender, E, Kolchanov, N A
Over the past years, evidence has been accumulating for a fundamental role of protein-protein interactions between transcription factors in gene-specific transcription regulation. Many of these...
P-Match: transcription factor binding site search by combining patterns and weight matrices
Chekmenev, D. S., Haid, C., Kel, A. E.
P-Match is a new tool for identifying transcription factor (TF) binding sites in DNA sequences. It combines pattern matching and weight matrix approaches thus providing higher accuracy of recognition...
TRANSFAC® and its module TRANSCompel®: transcriptional gene regulation in eukaryotes
Matys, V., Kel-Margoulis, O. V., Fricke, E., Liebich, I., Land, S., Barre-Dirrie, A., ...
The TRANSFAC® database on transcription factors, their binding sites, nucleotide distribution matrices and regulated genes as well as the complementing database TRANSCompel® on composite elements...