A. Xayaphoummine

Encoding folding paths of RNA switches (2007)

Xayaphoummine, A., Viasnoff, V., Harlepp, S., Isambert, H.

RNA co-transcriptional folding has long been suspected to play an active role in helping proper native folding of ribozymes and structured regulatory motifs in mRNA untranslated regions (UTRs). Yet,...

Encoding folding paths of RNA switches (2006)

Xayaphoummine, A., Viasnoff, V., Harlepp, S., Isambert, H.

RNA co-transcriptional folding has long been suspected to play an active role in helping proper native folding of ribozymes and structured regulatory motifs in mRNA untranslated regions. Yet, the...

doi:10.1093/nar/gkl1036 Encoding folding paths of RNA switches (2006)

A. Xayaphoummine, V. Viasnoff, H. Isambert

RNA co-transcriptional folding has long been suspected to play an active role in helping proper native folding of ribozymes and structured regulatory motifs in mRNA untranslated regions (UTRs). Yet,...

Encoding folding paths of RNA switches (2006)

Xayaphoummine, A., Viasnoff, V., Harlepp, S., Isambert, H.

RNA co-transcriptional folding has long been suspected to play an active role in helping proper native folding of ribozymes and structured regulatory motifs in mRNA untranslated regions (UTRs). Yet,...

Encoding folding paths of RNA switches (2006)

Xayaphoummine, A., Viasnoff, V., Harlepp, S., Isambert, H.

RNA co-transcriptional folding has long been suspected to play an active role in helping proper native folding of ribozymes and structured regulatory motifs in mRNA untranslated regions (UTRs). Yet,...

Kinefold web server for RNA/DNA folding path and structure prediction including pseudoknots and knots (2005)

A. Xayaphoummine, T. Bucher, H. Isambert

The Kinefold web server provides a web interface for stochastic folding simulations of nucleic acids on second to minute molecular time scales. Renaturation or co-transcriptional folding paths are...

Kinefold web server for RNA/DNA folding path and structure prediction including pseudoknots and knots (2005)

Xayaphoummine, A., Bucher, T., Isambert, H.

The Kinefold web server provides a web interface for stochastic folding simulations of nucleic acids on second to minute molecular time scales. Renaturation or co-transcriptional folding paths are...

Prediction and statistics of pseudoknots in RNA structures using exactly clustered stochastic simulations (2003)

Xayaphoummine, A., Bucher, T., Thalmann, F., Isambert, H.

Ab initio RNA secondary structure predictions have long dismissed helices interior to loops, so-called pseudoknots, despite their structural importance. Here, we report that many pseudoknots can be...

Probing complex RNA structures by mechanical force (2003)

Harlepp, S., Marchal, T., Robert, J., Leger, J-F., Xayaphoummine, A., Isambert, H., ...

RNA secondary structures of increasing complexity are probed combining single molecule stretching experiments and stochastic unfolding/refolding simulations. We find that force-induced unfolding...

Prediction and statistics of pseudoknots in RNA structures using exactly clustered stochastic simulations (2003)

Xayaphoummine, A., Bucher, T., Thalmann, F., Isambert, H.

Ab initio RNA secondary structure predictions have long dismissed helices interior to loops, so-called pseudoknots, despite their structural importance. Here, we report that many pseudoknots can be...

Probing complex RNA structures by mechanical force (2003)

Harlepp, S., Marchal, T., Robert, J., Xayaphoummine, A., Isambert, H., ...

RNA secondary structures of increasing complexity are probed combining single molecule stretching experiments and stochastic unfolding/refolding simulations. We find that force-induced unfolding...

Prediction and statistics of pseudoknots in RNA structures using exactly clustered stochastic simulations (2003)

Xayaphoummine, A., Bucher, T., Thalmann, F., Isambert, H.

Ab initio RNA secondary structure predictions have long dismissed helices interior to loops, so-called pseudoknots, despite their structural importance. Here, we report that many pseudoknots can be...

Probing complex RNA structures by mechanical force (2003)

Harlepp, S., Marchal, T., Robert, J., Xayaphoummine, A., Isambert, H., ...

RNA secondary structures of increasing complexity are probed combining single molecule stretching experiments and stochastic unfolding/refolding simulations. We find that force-induced unfolding...

Prediction and statistics of pseudoknots in RNA structures using exactly clustered stochastic simulations (2003)

Xayaphoummine, A., Bucher, T., Thalmann, F., Isambert, H.

Ab initio RNA secondary structure predictions have long dismissed helices interior to loops, so-called pseudoknots, despite their structural importance. Here, we report that many pseudoknots can be...

Probing complex RNA structures by mechanical force (2003)

Harlepp, S., Marchal, T., Robert, J., Xayaphoummine, A., Isambert, H., ...

RNA secondary structures of increasing complexity are probed combining single molecule stretching experiments and stochastic unfolding/refolding simulations. We find that force-induced unfolding...

Prediction and statistics of pseudoknots in RNA structures using exactly clustered stochastic simulations (2003)

Xayaphoummine, A., Bucher, T., Thalmann, F., Isambert, H.

Ab initio RNA secondary structure predictions have long dismissed helices interior to loops, so-called pseudoknots, despite their structural importance. Here, we report that many pseudoknots can be...

Probing complex RNA structures by mechanical force (2003)

Harlepp, S., Marchal, T., Robert, J., Xayaphoummine, A., Isambert, H., ...

RNA secondary structures of increasing complexity are probed combining single molecule stretching experiments and stochastic unfolding/refolding simulations. We find that force-induced unfolding...

Prediction and statistics of pseudoknots in RNA structures using exactly clustered stochastic simulations

Xayaphoummine, A., Bucher, T., Thalmann, F., Isambert, H.

Ab initio RNA secondary structure predictions have long dismissed helices interior to loops, so-called pseudoknots, despite their structural importance. Here we report that many pseudoknots can be...

Kinefold web server for RNA/DNA folding path and structure prediction including pseudoknots and knots

Xayaphoummine, A., Bucher, T., Isambert, H.

The Kinefold web server provides a web interface for stochastic folding simulations of nucleic acids on second to minute molecular time scales. Renaturation or co-transcriptional folding paths are...

Prediction and statistics of pseudoknots in RNA structures using exactly clustered stochastic simulations

Xayaphoummine, A., Bucher, T., Thalmann, F., Isambert, H.

Ab initio RNA secondary structure predictions have long dismissed helices interior to loops, so-called pseudoknots, despite their structural importance. Here we report that many pseudoknots can be...

Kinefold web server for RNA/DNA folding path and structure prediction including pseudoknots and knots

Xayaphoummine, A., Bucher, T., Isambert, H.

The Kinefold web server provides a web interface for stochastic folding simulations of nucleic acids on second to minute molecular time scales. Renaturation or co-transcriptional folding paths are...

Encoding folding paths of RNA switches

Xayaphoummine, A., Viasnoff, V., Harlepp, S., Isambert, H.

RNA co-transcriptional folding has long been suspected to play an active role in helping proper native folding of ribozymes and structured regulatory motifs in mRNA untranslated regions (UTRs). Yet,...