Abigail M. McGuire

A motif co-occurrence approach for genome-wide prediction of transcription-factorbinding sites in Escherichia coli. Genome Res (2008)

Martha L. Bulyk, Abigail M. Mcguire, Nobuhisa Masuda, George M. Church

Various computational approaches have been developed for predicting cis-regulatory DNA elements in prokaryotic genomes. We describe a novel method for predicting transcription-factor-binding sites in...

Cross-kingdom patterns of alternative splicing and splice recognition (2008)

McGuire, Abigail M, Pearson, Matthew D, Neafsey, Daniel E, Galagan, James E

Abstract Background Variations in transcript splicing can reveal how eukaryotes recognize intronic splice sites. Retained introns (RIs) commonly appear when the intron definition (ID) mechanism of...

A Motif Co-Occurrence Approach for Genome-Wide Prediction of Transcription-Factor-Binding Sites in Escherichia coli (2004)

Bulyk, Martha L., McGuire, Abigail M., Masuda, Nobuhisa, Church, George M.

Various computational approaches have been developed for predicting cis-regulatory DNA elements in prokaryotic genomes. We describe a novel method for predicting transcription-factor-binding sites in...

A Motif Co-Occurrence Approach for Genome-Wide Prediction of Transcription-Factor-Binding Sites in Escherichia coli

Bulyk, Martha L., McGuire, Abigail M., Masuda, Nobuhisa, Church, George M.

Various computational approaches have been developed for predicting cis-regulatory DNA elements in prokaryotic genomes. We describe a novel method for predicting transcription-factor-binding sites in...

A Motif Co-Occurrence Approach for Genome-Wide Prediction of Transcription-Factor-Binding Sites in Escherichia coli

Bulyk, Martha L., McGuire, Abigail M., Masuda, Nobuhisa, Church, George M.

Various computational approaches have been developed for predicting cis-regulatory DNA elements in prokaryotic genomes. We describe a novel method for predicting transcription-factor-binding sites in...

Cross-kingdom patterns of alternative splicing and splice recognition

McGuire, Abigail M, Pearson, Matthew D, Neafsey, Daniel E, Galagan, James E

A comprehensive survey of alternate splicing across 42 eukaryotes so as to gain insight into how spliceosomal introns are recognized.