Efficient oligonucleotide probe selection for pan-genomic tiling arrays (2009)
Phillippy, Adam M, Deng, Xiangyu, Zhang, Wei, Salzberg, Steven L
Abstract Background Array comparative genomic hybridization is a fast and cost-effective method for detecting, genotyping, and comparing the genomic sequence of unknown bacterial isolates. This...
Insignia: a DNA signature search web server for diagnostic assay development (2009)
Phillippy, Adam M., Ayanbule, Kunmi, Edwards, Nathan J., Salzberg, Steven L.
Insignia is a web application for the rapid identification of unique DNA signatures. DNA signatures are distinct nucleotide sequences that can be used to detect the presence of certain organisms and...
Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzaepv. oryzae PXO99A (2008)
Salzberg, Steven L, Sommer, Daniel D, Schatz, Michael C, Phillippy, Adam M, Rabinowicz, Pablo D, Tsuge, Seiji, ...
No abstract available.
Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzaepv. oryzae PXO99A (2008)
Salzberg, Steven L, Sommer, Daniel D, Schatz, Michael C, Phillippy, Adam M, Rabinowicz, Pablo D, Tsuge, Seiji, ...
Abstract Background Xanthomonas oryzae pv. oryzae causes bacterial blight of rice ( Oryza sativa L.), a major disease that constrains production of this staple crop in many parts of the world. We...
Genome assembly forensics: finding the elusive mis-assembly (2008)
Phillippy, Adam M, Schatz, Michael C, Pop, Mihai
Abstract We present the first collection of tools aimed at automated genome assembly validation. This work formalizes several mechanisms for detecting mis-assemblies, and describes their...
Comprehensive DNA Signature Discovery and Validation (2007)
Adam M. Phillippy, Jacquline A. Mason, Kunmi Ayanbule, Daniel D. Sommer, Elisa Taviani, Anwar Huq, ...
DNA signatures are nucleotide sequences that can be used to detect the presence of an organism and to distinguish that organism from all other species. Here we describe Insignia, a new, comprehensive...
Hawkeye: an interactive visual analytics tool for genome assemblies (2007)
Schatz, Michael C, Phillippy, Adam M, Shneiderman, Ben, Salzberg, Steven L
Abstract Genome sequencing remains an inexact science, and genome sequences can contain significant errors if they are not carefully examined. Hawkeye is our new visual analytics tool for genome...
Hawkeye: an interactive visual analytics tool for genome assemblies (2007)
Schatz, Michael C., Phillippy, Adam M., Shneiderman, Ben, Salzberg, Steven L.
Genome sequencing remains an inexact science, and genome sequences can contain significant errors if they are not carefully examined. Hawkeye is our new visual analytics tool for genome assemblies,...
Hawkeye: an interactive visual analytics tool for genome assemblies
Schatz, Michael C, Phillippy, Adam M, Shneiderman, Ben, Salzberg, Steven L
Hawkeye is a new, freely available visual analytics tool for genome assemblies, designed to aid in identifying and correcting assembly errors.
Comprehensive DNA Signature Discovery and Validation
Phillippy, Adam M, Mason, Jacquline A, Ayanbule, Kunmi, Sommer, Daniel D, Taviani, Elisa, Huq, Anwar, ...
DNA signatures are nucleotide sequences that can be used to detect the presence of an organism and to distinguish that organism from all other species. Here we describe Insignia, a new, comprehensive...
Genome assembly forensics: finding the elusive mis-assembly
Phillippy, Adam M, Schatz, Michael C, Pop, Mihai
A collection of software tools is combined for the first time in an automated pipeline for detecting large-scale genome assembly errors and for validating genome assemblies.
Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A
Salzberg, Steven L, Sommer, Daniel D, Schatz, Michael C, Phillippy, Adam M, Rabinowicz, Pablo D, Tsuge, Seiji, ...
Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A
Salzberg, Steven L, Sommer, Daniel D, Schatz, Michael C, Phillippy, Adam M, Rabinowicz, Pablo D, Tsuge, Seiji, ...
Insignia: a DNA signature search web server for diagnostic assay development
Phillippy, Adam M., Ayanbule, Kunmi, Edwards, Nathan J., Salzberg, Steven L.
Insignia is a web application for the rapid identification of unique DNA signatures. DNA signatures are distinct nucleotide sequences that can be used to detect the presence of certain organisms and...