probeBase--an online resource for rRNA-targeted oligonucleotide probes: new features 2007 (2007)
Loy, Alexander, Maixner, Frank, Wagner, Michael, Horn, Matthias
probeBase is a curated database of annotated rRNA-targeted oligonucleotide probes and supporting information. Rapid access to probe, microarray and reference data is achieved by powerful search tools...
New Insights into Metabolic Properties of Marine Bacteria Encoding Proteorhodopsins (2005)
Gazalah Sabehi, Alexander Loy, Kwang-Hwan Jung, Ranga Partha, John L. Spudich, Tal Isaacson, ...
Metagenomic analyses of the Mediterranean Sea and Red Sea estimate that proteorhodopsin genes are exploited by a surprisingly high percentage of bacteria. Experimental studies reveal metabolically...
New Insights into Metabolic Properties of Marine Bacteria Encoding Proteorhodopsins (2005)
Gazalah Sabehi, Alexander Loy, Kwang-Hwan Jung, Ranga Partha, John L. Spudich, Tal Isaacson, ...
Proteorhodopsin phototrophy was recently discovered in oceanic surface waters. In an effort to characterize uncultured proteorhodopsin-exploiting bacteria, large-insert bacterial artificial...
DNA Microarray Technology for Biodiversity Inventories of Sulfate-Reducing Prokaryotes (2005)
The polyphyletic origin of sulfate-reducing prokaryotes (SRPs) hampers their fast detection by well-established moleculare methods. Based on phylogenetic 16S rRNA sequence analysis, a so-called...
Functional marker genes for identification of sulfate-reducing prokaryotes (2005)
Wagner, Michael, Loy, Alexander, Klein, Michael, Lee, Natuschka, Ramsing, Niels B., Stahl, David A., ...
München, Techn. University, Diss., 2003.
DNA microarray technology for biodiversity inventories of sulfate reducing prokaryotes / (2003)
Enth. 3 Sonderabdr. aus verschiedenen Zeitschr., Text engl.
probeBase: an online resource for rRNA-targeted oligonucleotide probes (2003)
Loy, Alexander, Horn, Matthias, Wagner, Michael
Ribosomal RNA-(rRNA)-targeted oligonucleotide probes are widely used for culture-independent identification of microorganisms in environmental and clinical samples. ProbeBase is a comprehensive...
Microbial community composition and function in wastewater treatment plants (2002)
Wagner, Michael, Loy, Alexander, Nogueira, R., Purkhold, Ulrike, Lee, Natuschka, Daims, Holger
Biological wastewater treatment has been applied for more than a century to ameliorate anthropogenic damage to the environment. But only during the last decade the use of molecular tools allowed to...
Loy, Alexander, Lehner, Angelika, Lee, Natuschka, Adamczyk, Justyna, Meier, Harald, Ernst, Jens, ...
For cultivation-independent detection of sulfate-reducing prokaryotes (SRPs) an oligonucleotide microarray consisting of 132 16S rRNA gene-targeted oligonucleotide probes (18-mers) having...
probeBase: an online resource for rRNA-targeted oligonucleotide probes
Loy, Alexander, Horn, Matthias, Wagner, Michael
Ribosomal RNA-(rRNA)-targeted oligonucleotide probes are widely used for culture-independent identification of microorganisms in environmental and clinical samples. ProbeBase is a comprehensive...
Loy, Alexander, Küsel, Kirsten, Lehner, Angelika, Drake, Harold L., Wagner, Michael
Low-sulfate, acidic (approximately pH 4) fens in the Lehstenbach catchment in the Fichtelgebirge mountains in Germany are unusual habitats for sulfate-reducing prokaryotes (SRPs) that have been...
Lateral Gene Transfer of Dissimilatory (Bi)Sulfite Reductase Revisited
Zverlov, Vladimir, Klein, Michael, Lücker, Sebastian, Friedrich, Michael W., Kellermann, Josef, Stahl, David A., ...
In contrast to previous findings, we demonstrate that the dissimilatory (bi)sulfite reductase genes (dsrAB) of Desulfobacula toluolica were vertically inherited. Furthermore, Desulfobacterium anilini...
Loy, Alexander, Schulz, Claudia, Lücker, Sebastian, Schöpfer-Wendels, Andreas, Stoecker, Kilian, Baranyi, Christian, ...
For simultaneous identification of members of the betaproteobacterial order “Rhodocyclales” in environmental samples, a 16S rRNA gene-targeted oligonucleotide microarray (RHC-PhyloChip)...
Diversity of Bacteria Growing in Natural Mineral Water after Bottling
Loy, Alexander, Beisker, Wolfgang, Meier, Harald
Bacterial growth occurs in noncarbonated natural mineral waters a few days after filling and storage at room temperature, a phenomenon known for more than 40 years. Using the full-cycle rRNA...
New Insights into Metabolic Properties of Marine Bacteria Encoding Proteorhodopsins
Sabehi, Gazalah, Loy, Alexander, Jung, Kwang-Hwan, Partha, Ranga, Spudich, John L, Isaacson, Tal, ...
Proteorhodopsin phototrophy was recently discovered in oceanic surface waters. In an effort to characterize uncultured proteorhodopsin-exploiting bacteria, large-insert bacterial artificial...
Imachi, Hiroyuki, Sekiguchi, Yuji, Kamagata, Yoichi, Loy, Alexander, Qiu, Yan-Ling, Hugenholtz, Philip, ...
The classical perception of members of the gram-positive Desulfotomaculum cluster I as sulfate-reducing bacteria was recently challenged by the isolation of new representatives lacking the ability...
Loy, Alexander, Lehner, Angelika, Lee, Natuschka, Adamczyk, Justyna, Meier, Harald, Ernst, Jens, ...
For cultivation-independent detection of sulfate-reducing prokaryotes (SRPs) an oligonucleotide microarray consisting of 132 16S rRNA gene-targeted oligonucleotide probes (18-mers) having...
probeBase: an online resource for rRNA-targeted oligonucleotide probes
Loy, Alexander, Horn, Matthias, Wagner, Michael
Ribosomal RNA-(rRNA)-targeted oligonucleotide probes are widely used for culture-independent identification of microorganisms in environmental and clinical samples. ProbeBase is a comprehensive...
Loy, Alexander, Küsel, Kirsten, Lehner, Angelika, Drake, Harold L., Wagner, Michael
Low-sulfate, acidic (approximately pH 4) fens in the Lehstenbach catchment in the Fichtelgebirge mountains in Germany are unusual habitats for sulfate-reducing prokaryotes (SRPs) that have been...
Lateral Gene Transfer of Dissimilatory (Bi)Sulfite Reductase Revisited
Zverlov, Vladimir, Klein, Michael, Lücker, Sebastian, Friedrich, Michael W., Kellermann, Josef, Stahl, David A., ...
In contrast to previous findings, we demonstrate that the dissimilatory (bi)sulfite reductase genes (dsrAB) of Desulfobacula toluolica were vertically inherited. Furthermore, Desulfobacterium anilini...
Loy, Alexander, Schulz, Claudia, Lücker, Sebastian, Schöpfer-Wendels, Andreas, Stoecker, Kilian, Baranyi, Christian, ...
For simultaneous identification of members of the betaproteobacterial order “Rhodocyclales” in environmental samples, a 16S rRNA gene-targeted oligonucleotide microarray (RHC-PhyloChip)...
Diversity of Bacteria Growing in Natural Mineral Water after Bottling
Loy, Alexander, Beisker, Wolfgang, Meier, Harald
Bacterial growth occurs in noncarbonated natural mineral waters a few days after filling and storage at room temperature, a phenomenon known for more than 40 years. Using the full-cycle rRNA...
New Insights into Metabolic Properties of Marine Bacteria Encoding Proteorhodopsins
Sabehi, Gazalah, Loy, Alexander, Jung, Kwang-Hwan, Partha, Ranga, Spudich, John L, Isaacson, Tal, ...
Proteorhodopsin phototrophy was recently discovered in oceanic surface waters. In an effort to characterize uncultured proteorhodopsin-exploiting bacteria, large-insert bacterial artificial...
Imachi, Hiroyuki, Sekiguchi, Yuji, Kamagata, Yoichi, Loy, Alexander, Qiu, Yan-Ling, Hugenholtz, Philip, ...
The classical perception of members of the gram-positive Desulfotomaculum cluster I as sulfate-reducing bacteria was recently challenged by the isolation of new representatives lacking the ability...
probeBase—an online resource for rRNA-targeted oligonucleotide probes: new features 2007
Loy, Alexander, Maixner, Frank, Wagner, Michael, Horn, Matthias
probeBase is a curated database of annotated rRNA-targeted oligonucleotide probes and supporting information. Rapid access to probe, microarray and reference data is achieved by powerful search tools...
probeCheck – a central resource for evaluating oligonucleotide probe coverage and specificity
Loy, Alexander, Arnold, Roland, Tischler, Patrick, Rattei, Thomas, Wagner, Michael, Horn, Matthias
The web server probeCheck, freely accessible at http://www.microbial-ecology.net/probecheck, provides a pivotal forum for rapid specificity and coverage evaluations of probes and primers against...
Loy, Alexander, Duller, Stephan, Baranyi, Christian, Mußmann, Marc, Ott, Jörg, Sharon, Itai, ...
Sulfur-oxidizing prokaryotes (SOP) catalyse a central step in the global S-cycle and are of major functional importance for a variety of natural and engineered systems, but our knowledge on their...