IDEA: Interactive Display for Evolutionary Analyses (2008)
Egan, Amy, Mahurkar, Anup, Crabtree, Jonathan, Badger, Jonathan H, Carlton, Jane M, Silva, Joana C
Abstract Background The availability of complete genomic sequences for hundreds of organisms promises to make obtaining genome-wide estimates of substitution rates, selective constraints and other...
Characterization of paralogous protein families in rice (2008)
Lin, Haining, Ouyang, Shu, Egan, Amy, Nobuta, Kan, Haas, Brian J, Zhu, Wei, ...
Abstract Background High gene numbers in plant genomes reflect polyploidy and major gene duplication events. Oryza sativa , cultivated rice, is a diploid monocotyledonous species with a ~390 Mb...
BioMed Central Software IDEA: Interactive Display for Evolutionary Analyses (2008)
Bmc Bioinformatics, Amy Egan, Anup Mahurkar, Jonathan Crabtree, Jonathan H Badger, Jane M Carlton, ...
© 2008 Egan et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License
Richards, Stephen, Liu, Yue, Bettencourt, Brian R., Hradecky, Pavel, Letovsky, Stan, Nielsen, Rasmus, ...
We have sequenced the genome of a second Drosophila species, Drosophila pseudoobscura, and compared this to the genome sequence of Drosophila melanogaster, a primary model organism. Throughout...
Richards, Stephen, Liu, Yue, Bettencourt, Brian R., Hradecky, Pavel, Letovsky, Stan, Nielsen, Rasmus, ...
The genome sequence of a second fruit fly, D. pseudoobscura, presents an opportunity for comparative analysis of a primary model organism D. melanogaster. The vast majority of Drosophila genes have...
The Atlas Genome Assembly System (2004)
Havlak, Paul, Chen, Rui, Durbin, K. James, Egan, Amy, Ren, Yanru, Song, Xing-Zhi, ...
Atlas is a suite of programs developed for assembly of genomes by a “combined approach” that uses DNA sequence reads from both BACs and whole-genome shotgun (WGS) libraries. The BAC clones afford...
The Atlas Genome Assembly System
Havlak, Paul, Chen, Rui, Durbin, K. James, Egan, Amy, Ren, Yanru, Song, Xing-Zhi, ...
Atlas is a suite of programs developed for assembly of genomes by a “combined approach” that uses DNA sequence reads from both BACs and whole-genome shotgun (WGS) libraries. The BAC clones afford...
Richards, Stephen, Liu, Yue, Bettencourt, Brian R., Hradecky, Pavel, Letovsky, Stan, Nielsen, Rasmus, ...
We have sequenced the genome of a second Drosophila species, Drosophila pseudoobscura, and compared this to the genome sequence of Drosophila melanogaster, a primary model organism. Throughout...
The Atlas Genome Assembly System
Havlak, Paul, Chen, Rui, Durbin, K. James, Egan, Amy, Ren, Yanru, Song, Xing-Zhi, ...
Atlas is a suite of programs developed for assembly of genomes by a “combined approach” that uses DNA sequence reads from both BACs and whole-genome shotgun (WGS) libraries. The BAC clones afford...
Richards, Stephen, Liu, Yue, Bettencourt, Brian R., Hradecky, Pavel, Letovsky, Stan, Nielsen, Rasmus, ...
We have sequenced the genome of a second Drosophila species, Drosophila pseudoobscura, and compared this to the genome sequence of Drosophila melanogaster, a primary model organism. Throughout...
Characterization of paralogous protein families in rice
Lin, Haining, Ouyang, Shu, Egan, Amy, Nobuta, Kan, Haas, Brian J, Zhu, Wei, ...
Genomic Islands in the Pathogenic Filamentous Fungus Aspergillus fumigatus
Fedorova, Natalie D., Khaldi, Nora, Joardar, Vinita S., Maiti, Rama, Amedeo, Paolo, Anderson, Michael J., ...
We present the genome sequences of a new clinical isolate of the important human pathogen, Aspergillus fumigatus, A1163, and two closely related but rarely pathogenic species, Neosartorya fischeri...