FuGEFlow: data model and markup language for flow cytometry (2009)
Qian, Yu, Tchuvatkina, Olga, Spidlen, Josef, Wilkinson, Peter, Gasparetto, Maura, Jones, Andrew R, ...
Abstract Background Flow cytometry technology is widely used in both health care and research. The rapid expansion of flow cytometry applications has outpaced the development of data storage and...
Guidelines for reporting the use of gel electrophoresis in proteomics (2009)
Gibson, Frank, Anderson, Leigh, Babnigg, Gyorgy, Baker, Mark, Berth, Matthias, Binz, Pierre-Alain, ...
the MIAPE Gel Electrophoresis (MIAPE-GE) guidelines specify the minimum information that should be provided when reporting the use of n-dimensional gel electrophoresis in a proteomics experiment....
The Functional Genomics Experiment model (FuGE): (2008)
Andrew R Jones, Michael Miller, Ruedi Aebersold, Rolf Apweiler, Catherine A Ball, Alvis Brazma, ...
an extensible framework for standards in functional genomics
Xia, Dong, Sanderson, Sanya J, Jones, Andrew R, Prieto, Judith H, Yates, John R, Bromley, Elizabeth, ...
Abstract Background Although the genomes of many of the most important human and animal pathogens have now been sequenced, our understanding of the actual proteins expressed by these genomes and how...
Guidelines for reporting the use of gel electrophoresis in proteomics. (2008)
Gibson, Frank, Anderson, Leigh, Babnigg, Gyorgy, Baker, Mark, Berth, Matthias, Binz, Pierre-Alain, ...
the MIAPE Gel Electrophoresis (MIAPE-GE) guidelines specify the minimum information that should be provided when reporting the use of n-dimensional gel electrophoresis in a proteomics experiment....
Guidelines for reporting the use of gel electrophoresis in proteomics. (2008)
Gibson, Frank, Anderson, Leigh, Babnigg, Gyorgy, Baker, Mark, Berth, Matthias, Binz, Pierre-Alain, ...
the MIAPE Gel Electrophoresis (MIAPE-GE) guidelines specify the minimum information that should be provided when reporting the use of n-dimensional gel electrophoresis in a proteomics experiment....
A toolkit for capturing and sharing FuGE experiments (2008)
Belhajjame, Khalid, Jones, Andrew R., Paton, Norman W.
Motivation: The Functional Genomics Experiment Object Model (FuGE) supports modelling of experimental processes either directly or through extensions that specialize FuGE for use in specific...
Jones, Andrew R, Miller, Michael, Aebersold, Ruedi, Apweiler, Rolf, Ball, Catherine A, Brazma, Alvis, ...
The Functional Genomics Experiment data model (FuGE) has been developed to facilitate convergence of data standards for high-throughput, comprehensive analyses in biology. FuGE models the components...
Pride Wizard: generation of standards compliant quantitative proteomics data (2007)
Swainston, Neil, Siepen, Jennifer A, Jones, Andrew R, Hart, Sarah R, Hermjakob, Henning, Jones, Phil, ...
Siepen, Jennifer A, Swainston, Neil, Jones, Andrew R, Hart, Sarah R, Hermjakob, Henning, Jones, Philip, ...
Abstract Background Proteomics continues to play a critical role in post-genomic science as continued advances in mass spectrometry and analytical chemistry support the separation and identification...
Proteome Science Research An informatic pipeline for the data capture and submission of (2007)
Neil Swainston, Andrew R Jones, Sarah R Hart, Henning Hermjakob, Philip Jones, Simon J Hubbard, ...
This is an Open Access article distributed under the terms of the Creative Commons Attribution License
An analysis of extensible modelling for functional genomics data (2005)
Jones, Andrew R, Paton, Norman W
Abstract Background Several data formats have been developed for large scale biological experiments, using a variety of methodologies. Most data formats contain a mechanism for allowing extensions to...
Andrew R Jones, Norman W Paton, Andrew R Jones, Norman W Paton
Background: Several data formats have been developed for large scale biological experiments, using a variety of methodologies. Most data formats contain a mechanism for allowing extensions to encode...
Thesis (Ph.D. in Anatomy) -- Graduate School of Arts and Sciences, University of Pennsylvania, 1993.
Implementing the FuGE Object Model: a Systems Biology Data Portal and Integrator (1016)
A. L. Lister, A. R. Jones, M. Pocock, O. Shaw, A. Wipat, ...
The Centre for Integrated Systems Biology of Ageing and Nutrition has developed a Data Portal and Integrator (CISBAN DPI) that is based on the FuGE Object Model and which archives, stores, and...
Siepen, Jennifer A, Swainston, Neil, Jones, Andrew R, Hart, Sarah R, Hermjakob, Henning, Jones, Philip, ...
Xia, Dong, Sanderson, Sanya J, Jones, Andrew R, Prieto, Judith H, Yates, John R, Bromley, Elizabeth, ...
A proteomics analysis identifies one third of the predicted Toxoplasma gondii proteins and integrates proteomics and genomics data to refine genome annotation.