application to the study of a family (2008)
Sébastien Tempel, Mathieu Giraud, Dominique Lavenier, Israël-césar Lerman, Anne-sophie Valin, Ivan Couée, ...
doi:10.1093/bioinformatics/btl337
Modeling local repeats on genomic sequences (2008)
Nicolas, Jacques, Rousseau, Christine, Siegel, Anne, Peterlongo, Pierre, Coste, François, Durand, Patrick, ...
This paper deals with the specification and search of repeats of biological interest, i.e. repeats that may have a role in genomic structures or functions. Although some particular repeats such as...
Modeling local repeats on genomic sequences (2008)
Nicolas, Jacques, Rousseau, Christine, Siegel, Anne, Peterlongo, Pierre, Coste, François, Durand, Patrick, ...
This paper deals with the specification and search of repeats of biological interest, i.e. repeats that may have a role in genomic structures or functions. Although some particular repeats such as...
Browsing repeats in genomes: Pygram and an application to non-coding region analysis (2006)
Durand, Patrick, Mahé, Frédéric, Valin, Anne-Sophie, Nicolas, Jacques
Abstract Background A large number of studies on genome sequences have revealed the major role played by repeated sequences in the structure, function, dynamics and evolution of genomes. In-depth...
BMC Bioinformatics BioMed Central Methodology article (2006)
Patrick Dur, Frédéric Mahé, Anne-sophie Valin, Jacques Nicolas
© 2006 Durand et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License
Tempel, Sébastien, Giraud, Mathieu, Lavenier, Dominique, Lerman, Israël-César, Valin, Anne-Sophie, Couée, Ivan, ...
Motivation: The analysis of repeated elements in genomes is a fascinating domain of research that is lacking relevant tools for transposable elements (TEs), the most complex ones. The dynamics of...
The dog and rat olfactory receptor repertoires (2005)
Quignon, Pascale, Giraud, Mathieu, Rimbault, Maud, Lavigne, Patricia, Tacher, Sandrine, Morin, Emmanuelle, ...
Abstract Background Dogs and rats have a highly developed capability to detect and identify odorant molecules, even at minute concentrations. Previous analyses have shown that the olfactory receptors...
Suffix-Tree Analyser (STAN): looking for nucleotidic and peptidic patterns in genomes (2005)
Nicolas, Jacques, Durand, Patrick, Ranchy, Grégory, Tempel, Sébastien, Valin, Anne-Sophie
BIOINFORMATICSAPPLICATIONS NOTE (2005)
Genome Analysis, Jacques Nicolas, Patrick Dur, Grégory Ranchy, Sébastien Tempel, Anne-sophie Valin
Suffix-tree analyser (STAN): looking for nucleotidic and peptidic patterns in chromosomes
Suffix-tree analyser (STAN): looking for nucleotidic and peptidic patterns in chromosomes (2005)
Nicolas, Jacques, Durand, Patrick, Ranchy, Grégory, Tempel, Sébastien, Valin, Anne-Sophie
Summary: We have developed STAN (suffix-tree analyser), a tool to search for nucleotidic and peptidic patterns within whole chromosomes. Pattern syntax uses a string variable grammar-like formalism...
Suffix-Tree ANalyser (STAN): looking for nucleotidic and peptidic patterns in chromosomes (2005)
Nicolas, Jacques, Durand, Patrick, Ranchy, Grégory, Tempel, Sébastien, Valin, Anne-Sophie
Summary: we have developed STAN, a tool to search for nucleotidic and peptidic patterns within whole chromosomes. Pattern syntax uses a String Variable Grammar-like formalism which allows the...
The dog and rat olfactory receptor repertoires
Quignon, Pascale, Giraud, Mathieu, Rimbault, Maud, Lavigne, Patricia, Tacher, Sandrine, Morin, Emmanuelle, ...
An almost complete list of odorant receptor genes in the dog (1,094 genes) and the rat (1,493 genes) is described. A comparison of odorant receptor repertoires in rat, dog, mouse and human is also...
Browsing repeats in genomes: Pygram and an application to non-coding region analysis
Durand, Patrick, Mahé, Frédéric, Valin, Anne-Sophie, Nicolas, Jacques
The dog and rat olfactory receptor repertoires
Quignon, Pascale, Giraud, Mathieu, Rimbault, Maud, Lavigne, Patricia, Tacher, Sandrine, Morin, Emmanuelle, ...
An almost complete list of odorant receptor genes in the dog (1,094 genes) and the rat (1,493 genes) is described. A comparison of odorant receptor repertoires in rat, dog, mouse and human is also...