Multidimensional local false discovery rate for microarray studies (2008)
Gene Expression, Er Ploner, Stefano Calza, Arief Gusnanto, Yudi Pawitan
doi:10.1093/bioinformatics/btk013
BIOINFORMATICS ORIGINAL PAPER (2008)
Gene Expression, Yudi Pawitan, Stefan Michiels, Serge Koscielny, Arief Gusnanto, Alexander Ploner
doi:10.1093/bioinformatics/bti448 False discovery rate, sensitivity and sample size for microarray studies
Robust smooth segmentation approach for array CGH data analysis (2007)
Huang, Jian, Gusnanto, Arief, O'Sullivan, Kathleen, Staaf, Johan, Borg, Åke, Pawitan, Yudi
Motivation: Array comparative genomic hybridization (aCGH) provides a genome-wide technique to screen for copy number alteration. The existing segmentation approaches for analyzing aCGH data are...
Robust smooth segmentation approach for array CGH data analysis. (2007)
Huang, Jian, Gusnanto, Arief, O'sullivan, Kathleen, Staaf, Johan, Borg, Ake, Pawitan, Yudi
Abstract is not available
Robust smooth segmentation approach for array CGH data (2007)
Jian Huang, Arief Gusnanto, Johan Staaf, Yudi Pawitan, Prof Thomas Lengauer
analysis
Multidimensional local false discovery rate for microarray studies (2006)
Er Ploner, Arief Gusnanto, Yudi Pawitan
Motivation: The false discovery rate (fdr) is a key tool for statistical assessment of differential expression (DE) in microarray studies. Overall control of the fdr alone, however, is not sufficient...
Multidimensional local false discovery rate for microarray studies (2006)
Ploner, Alexander, Calza, Stefano, Gusnanto, Arief, Pawitan, Yudi
Motivation: The false discovery rate (fdr) is a key tool for statistical assessment of differential expression (DE) in microarray studies. Overall control of the fdr alone, however, is not sufficient...
Fold-Change Estimation of Differentially Expressed Genes using Mixture Mixed-Model (2005)
Gusnanto, Arief, Ploner, Alexander, Pawitan, Yudi
Microarray experiments produce expression measurements for thousands of genes simultaneously, though usually for a small number of RNA samples. The most common problem is the identification of genes...
Fold-Change Estimation of Differentially Expressed Genes using Mixture Mixed-Model (2005)
Gusnanto, Arief, Ploner, Alexander, Pawitan, Yudi
Microarray experiments produce expression measurements for thousands of genes simultaneously, though usually for a small number of RNA samples. The most common problem is the identification of genes...
Fold-Change Estimation of Differentially Expressed Genes using Mixture Mixed-Model (2005)
Gusnanto, Arief, Ploner, Alexander, Pawitan, Yudi
Microarray experiments produce expression measurements for thousands of genes simultaneously, though usually for a small number of RNA samples. The most common problem is the identification of genes...
Fold-Change Estimation of Differentially Expressed Genes using Mixture Mixed-Model (2005)
Gusnanto, Arief, Ploner, Alexander, Pawitan, Yudi
Microarray experiments produce expression measurements for thousands of genes simultaneously, though usually for a small number of RNA samples. The most common problem is the identification of genes...
False discovery rate and sample size for microarray studies (2005)
Pawitan, Yudi, Michiels, Stefan, Koscielny, Serge, Gusnanto, Arief, Ploner, Alexander
Motivation: In microarray data studies most researchers are keenly aware of the potentially high rate of false positives and the need to control it. One key statistical shift is the move away from...
False Discovery Rate, Sensitivity and Sample Size for Microarray Studies (2005)
Pawitan, Yudi, Michiels, Stefan, Koscielny, Serge, Gusnanto, Arief, Ploner, Alexander
Motivation: In microarray data studies most researchers are keenly aware of the potentially high rate of false positives and the need to control it. One key statistical shift is the move away from...
Multidimensional local false discovery rate for microarray studies (2005)
Ploner, Alexander, Calza, Stefano, Gusnanto, Arief, Pawitan, Yudi
Motivation: The false discovery rate (fdr) is a key tool for statistical assessment of differential expression (DE) in microarray studies. Overall control of the fdr alone, however, is not sufficient...
Xue,Yongtao T., Haas,Stefan, Brino,Laurento, Gusnanto,Arief, Riemers,Mark, Talibi,Driss, ...
Completion of the fission yeast genome sequence has opened up possibilities for post-genomic approaches. We have constructed a DNA microarray for genome-wide gene expression analysis in fission...
Xue,Yongtao T., Haas,Stefan, Brino,Laurento, Gusnanto,Arief, Riemers,Mark, Talibi,Driss, ...
Completion of the fission yeast genome sequence has opened up possibilities for post-genomic approaches. We have constructed a DNA microarray for genome-wide gene expression analysis in fission...
Xue, Yongtao T., Haas, Stefan, Brino, Laurento, Gusnanto, Arief, Riemers, Mark, Talibi, Driss, ...
Completion of the fission yeast genome sequence has opened up possibilities for post-genomic approaches. We have constructed a DNA microarray for genome-wide gene expression analysis in fission...
Xue, Yongtao T., Haas, Stefan, Brino, Laurento, Gusnanto, Arief, Riemers, Mark, Talibi, Driss, ...
Completion of the fission yeast genome sequence has opened up possibilities for post-genomic approaches. We have constructed a DNA microarray for genome-wide gene expression analysis in fission...
Xue,Yongtao T., Haas,Stefan, Brino,Laurento, Gusnanto,Arief, Riemers,Mark, Talibi,Driss, ...
Completion of the fission yeast genome sequence has opened up possibilities for post-genomic approaches. We have constructed a DNA microarray for genome-wide gene expression analysis in fission...
Xue, Yongtao T., Haas, Stefan, Brino, Laurento, Gusnanto, Arief, Riemers, Mark, Talibi, Driss, ...
Completion of the fission yeast genome sequence has opened up possibilities for post-genomic approaches. We have constructed a DNA microarray for genome-wide gene expression analysis in fission...
Platelet genomics and proteomics in human health and disease
Macaulay, Iain C., Carr, Philippa, Gusnanto, Arief, Ouwehand, Willem H., Fitzgerald, Des, Watkins, Nicholas A.
Proteomic and genomic technologies provide powerful tools for characterizing the multitude of events that occur in the anucleate platelet. These technologies are beginning to define the complete...
Platelet genomics and proteomics in human health and disease
Macaulay, Iain C., Carr, Philippa, Gusnanto, Arief, Ouwehand, Willem H., Fitzgerald, Des, Watkins, Nicholas A.
Proteomic and genomic technologies provide powerful tools for characterizing the multitude of events that occur in the anucleate platelet. These technologies are beginning to define the complete...
Fold-Change Estimation of Differentially Expressed Genes using Mixture Mixed-Model
Arief Gusnanto, Alexander Ploner, Yudi Pawitan
Microarray experiments produce expression measurements for thousands of genes simultaneously, though usually for a small number of RNA samples. The most common problem is the identification of genes...
Estimation of significance thresholds for genomewide association scans
Dudbridge, Frank, Gusnanto, Arief
The question of what significance threshold is appropriate for genomewide association studies is somewhat unresolved. Previous theoretical suggestions have yet to be validated in practice, whereas...
A HaemAtlas: characterizing gene expression in differentiated human blood cells
Watkins, Nicholas A., Gusnanto, Arief, De Bono, Bernard, De, Subhajyoti, Miranda-Saavedra, Diego, Hardie, Debbie L., ...
Hematopoiesis is a carefully controlled process that is regulated by complex networks of transcription factors that are, in part, controlled by signals resulting from ligand binding to cell-surface...