Stereoselective glycosylation: beta-mannosylation and alpha-sialylation (2009)
β-Mannosylation and α-sialylation has long been considered to be the most challenging glycosidic bond forming reactions to achieve in carbohydrate chemistry due to the inability of taking...
ABSTRACT ON THE APPLICATION OF GIS TO AUTOMATED PLANNING AND DESIGN OF HYDRO-SYSTEMS (2008)
With the rapid advancements of the state of the art in computational modeling of hydroscience and
BIOINFORMATICS ORIGINAL PAPER (2008)
Genome Analysis, Tao Huang, Baolin Wu, Paul Lizardi, Hongyu Zhao
doi:10.1093/bioinformatics/bti646
Bayesian Mass Spectra Peak Alignment from Mass Charge Ratios (2008)
Junfeng Liu, Weichuan Yu, Baolin Wu, Hongyu Zhao
Proteomics studies based on mass spectrometry (MS) are gaining popular applications in biomedical research for protein identification/quantification and biomarker discovery, especially for potential...
Bayesian Mass Spectra Peak Alignment from Mass Charge Ratios (2008)
Junfeng Liu, Weichuan Yu, Baolin Wu, Hongyu Zhao
Proteomics studies based on mass spectrometry (MS) are gaining popular applications in biomedical research for protein identification/quantification and biomarker discovery, especially for potential...
Robust and efficient identification of biomarkers by classifying features on graphs (2008)
Hwang, TaeHyun, Sicotte, Hugues, Tian, Ze, Wu, Baolin, Kocher, Jean-Pierre, Wigle, Dennis A., ...
Motivation: A central problem in biomarker discovery from large-scale gene expression or single nucleotide polymorphism (SNP) data is the computational challenge of taking into account the dependence...
Functional group-based linkage analysis of gene expression trait loci (2007)
Li, Na, Wu, Baolin, Wei, Peng, Xie, Benhuai, Xie, Yang, Xiao, Guanghua, ...
Abstract We explored approaches to using multiple related traits (gene expression levels) in linkage analysis. We first grouped mRNA transcripts according to their functions annotated in biological...
Cancer outlier differential gene expression detection (2007)
We study statistical methods to detect cancer genes that are over- or down-expressed in some but not all samples in a disease group. This has proven useful in cancer studies where oncogenes are...
Multiple peak alignment in sequential data analysis : a scale-space-based approach (2006)
Yu, Weichuan, Li, Xiaoye, Liu, Junfeng, Wu, Baolin, Williams, Kenneth R., Zhao, Hongyu
In this paper, we address the multiple peak alignment problem in sequential data analysis with an approach based on the Gaussian scale-space theory. We assume that multiple sets of detected peaks are...
PSMIX: an R package for population structure inference via maximum likelihood method (2006)
Wu, Baolin, Liu, Nianjun, Zhao, Hongyu
Abstract Background Inference of population stratification and individual admixture from genetic markers is an integrative part of a study in diverse situations, such as association mapping and...
Formulating agent interaction for ontology evolution (2006)
Using agent technologies in the distributed and complex systems attracts increasing attentions. In this paper, agent interactions between different ontologies (agents) are studied from process...
Formulating agent interaction for ontology evolution (2006)
Using agent technologies in the distributed and complex systems attracts increasing attentions. In this paper, agent interactions between different ontologies (agents) are studied from process...
Implementation of agent-based ontology mapping and integration (2006)
The achievement of some business goals requires more than individual capabilities and knowledge. Hence, it is necessary for different organisations to work together in order to achieve the goals. In...
Ontological approach towards e-business process automation (2006)
This paper discusses the interoperability of e-business processes by using an ontology approach with description logic and agent systems to achieve e-business automation. An innovative e-business...
Ovarian Cancer Classification based on Mass Spectrometry Analysis of Sera (2006)
Baolin Wu, Tom Abbott, David Fishman, Walter McMurray, Gil Mor, Kathryn Stone, ...
In our previous study [1], we have compared the performance of a number of widely used discrimination methods for classifying ovarian cancer using Matrix Assisted Laser Desorption Ionization (MALDI)...
Formulating agent interaction for ontology evolution (2006)
Using agent technologies in the distributed and complex systems attracts increasing attentions. In this paper, agent interactions between different ontologies (agents) are studied from process...
Implementation of agent-based ontology mapping and integration (2006)
The achievement of some business goals requires more than individual capabilities and knowledge. Hence, it is necessary for different organisations to work together in order to achieve the goals. In...
Ontological approach towards e-business process automation (2006)
This paper discusses the interoperability of e-business processes by using an ontology approach with description logic and agent systems to achieve e-business automation. An innovative e-business...
Formulating agent interaction for ontology evolution (2006)
Using agent technologies in the distributed and complex systems attracts increasing attentions. In this paper, agent interactions between different ontologies (agents) are studied from process...
Ontological approach towards e-business process automation (2006)
This paper discusses the interoperability of e-business processes by using an ontology approach with description logic and agent systems to achieve e-business automation. An innovative e-business...
Implementation of agent-based ontology mapping and integration (2006)
The achievement of some business goals requires more than individual capabilities and knowledge. Hence, it is necessary for different organisations to work together in order to achieve the goals. In...
Ontological approach towards e-business process automation (2006)
This paper discusses the interoperability of e-business processes by using an ontology approach with description logic and agent systems to achieve e-business automation. An innovative e-business...
Implementation of agent-based ontology mapping and integration (2006)
The achievement of some business goals requires more than individual capabilities and knowledge. Hence, it is necessary for different organisations to work together in order to achieve the goals. In...
Formulating agent interaction for ontology evolution (2006)
Using agent technologies in the distributed and complex systems attracts increasing attentions. In this paper, agent interactions between different ontologies (agents) are studied from process...
Ontological approach towards e-business process automation (2006)
This paper discusses the interoperability of e-business processes by using an ontology approach with description logic and agent systems to achieve e-business automation. An innovative e-business...
Implementation of agent-based ontology mapping and integration (2006)
The achievement of some business goals requires more than individual capabilities and knowledge. Hence, it is necessary for different organisations to work together in order to achieve the goals. In...
Cancer outlier differential gene expression detection (2006)
We study statistical methods to detect cancer genes that are over- or down-expressed in some but not all samples in a disease group. This has proven useful in cancer studies where oncogenes are...
Carriero, Nicholas, Osier, Michael, Cheung, Kei-Hoi, Miller, Perry, Gerstein, Mark, Zhao, Hongyu, ...
Article may be found at: http://www.jamia.org/cgi/content/abstract/12/1/90
Carriero, Nicholas, Osier, Michael, Cheung, Kei-Hoi, Miller, Perry, Gerstein, Mark, Zhao, Hongyu, ...
Article may be found at: http://www.jamia.org/cgi/content/abstract/12/1/90
Value process and business process in e-business modelling (2005)
Dewan, Mohammed N., Wu, Baolin, Yang, Yun
Abstract not available.
A formal approach for deriving business process from value process in e-business modelling (2005)
Dewan, Mohammed N., Wu, Baolin, Yang, Yun
Abstract not available.
Agent-based ontology integration for ontology-based applications (2005)
In this paper, a novel agent-based ontology integration framework is developed for agents which consume ontologies in ontology-based applications as well as engage in tasks of ontology integration....
Agent-based ontology mapping towards ontology interoperability (2005)
Globalisation of business environments on the Web has given rise to the advent of similar ontologies in which dynamic ontology mapping is called in. Ontology mapping is necessary for ontology...
Semantic mapping with multi-agent systems (2005)
This paper introduces a multi-agent system (MAS) architecture and a relevant algorithm for multiple agents to manage and deploy ontologies in a dynamic environment. Firstly, an ontology description...
Ontology-based matchmaking in e-Marketplace with web services (2005)
The proliferation of Internet technology and globalisation of business environment give rise to the advent of virtual e-marketplace among complementary organisations. With significant computational...
Agent-based approach towards ontology refinement in virtual enterprises (2005)
Abstract not available.
Agent-based approach for dynamic ontology management (2005)
In this paper, we present an ontology definition which is helpful in symbolising the ontology and ontology management. By investigating interactions between agents in business scenarios, we adopt the...
Supply chain protocolling (2005)
Dewan, Mohammed N., Li, Li, Wu, Baolin, Yang, Yun
Faced with the challenges of current e-business powered competitive environments, enterprises now find that it is not adequate to manage their own businesses but also the supply chain. They must be...
A formal approach for deriving business process from value process in e-business modelling (2005)
Dewan, Mohammed N., Wu, Baolin, Yang, Yun
Abstract not available.
Value process and business process in e-business modelling (2005)
Dewan, Mohammed N., Wu, Baolin, Yang, Yun
Abstract not available.
Agent-based ontology integration for ontology-based applications (2005)
In this paper, a novel agent-based ontology integration framework is developed for agents which consume ontologies in ontology-based applications as well as engage in tasks of ontology integration....
Agent-based ontology mapping towards ontology interoperability (2005)
Globalisation of business environments on the Web has given rise to the advent of similar ontologies in which dynamic ontology mapping is called in. Ontology mapping is necessary for ontology...
Semantic mapping with multi-agent systems (2005)
This paper introduces a multi-agent system (MAS) architecture and a relevant algorithm for multiple agents to manage and deploy ontologies in a dynamic environment. Firstly, an ontology description...
Ontology-based matchmaking in e-Marketplace with web services (2005)
The proliferation of Internet technology and globalisation of business environment give rise to the advent of virtual e-marketplace among complementary organisations. With significant computational...
Agent-based approach towards ontology refinement in virtual enterprises (2005)
Abstract not available.
Agent-based approach for dynamic ontology management (2005)
In this paper, we present an ontology definition which is helpful in symbolising the ontology and ontology management. By investigating interactions between agents in business scenarios, we adopt the...
Supply chain protocolling (2005)
Dewan, Mohammed N., Li, Li, Wu, Baolin, Yang, Yun
Faced with the challenges of current e-business powered competitive environments, enterprises now find that it is not adequate to manage their own businesses but also the supply chain. They must be...
A formal approach for deriving business process from value process in e-business modelling (2005)
Dewan, Mohammed N., Wu, Baolin, Yang, Yun
Abstract not available.
Value process and business process in e-business modelling (2005)
Dewan, Mohammed N., Wu, Baolin, Yang, Yun
Abstract not available.
Agent-based ontology integration for ontology-based applications (2005)
In this paper, a novel agent-based ontology integration framework is developed for agents which consume ontologies in ontology-based applications as well as engage in tasks of ontology integration....
Agent-based ontology mapping towards ontology interoperability (2005)
Globalisation of business environments on the Web has given rise to the advent of similar ontologies in which dynamic ontology mapping is called in. Ontology mapping is necessary for ontology...
Semantic mapping with multi-agent systems (2005)
This paper introduces a multi-agent system (MAS) architecture and a relevant algorithm for multiple agents to manage and deploy ontologies in a dynamic environment. Firstly, an ontology description...
Ontology-based matchmaking in e-Marketplace with web services (2005)
The proliferation of Internet technology and globalisation of business environment give rise to the advent of virtual e-marketplace among complementary organisations. With significant computational...
Agent-based approach towards ontology refinement in virtual enterprises (2005)
Abstract not available.
Agent-based approach for dynamic ontology management (2005)
In this paper, we present an ontology definition which is helpful in symbolising the ontology and ontology management. By investigating interactions between agents in business scenarios, we adopt the...
Supply chain protocolling (2005)
Dewan, Mohammed N., Li, Li, Wu, Baolin, Yang, Yun
Faced with the challenges of current e-business powered competitive environments, enterprises now find that it is not adequate to manage their own businesses but also the supply chain. They must be...
Value process and business process in e-business modelling (2005)
Dewan, Mohammed N., Wu, Baolin, Yang, Yun
Abstract not available.
Agent-based ontology mapping towards ontology interoperability (2005)
Globalisation of business environments on the Web has given rise to the advent of similar ontologies in which dynamic ontology mapping is called in. Ontology mapping is necessary for ontology...
Semantic mapping with multi-agent systems (2005)
This paper introduces a multi-agent system (MAS) architecture and a relevant algorithm for multiple agents to manage and deploy ontologies in a dynamic environment. Firstly, an ontology description...
Agent-based approach towards ontology refinement in virtual enterprises (2005)
Abstract not available.
Agent-based approach for dynamic ontology management (2005)
In this paper, we present an ontology definition which is helpful in symbolising the ontology and ontology management. By investigating interactions between agents in business scenarios, we adopt the...
A formal approach for deriving business process from value process in e-business modelling (2005)
Dewan, Mohammed N., Wu, Baolin, Yang, Yun
Abstract not available.
Ontology-based matchmaking in e-Marketplace with web services (2005)
The proliferation of Internet technology and globalisation of business environment give rise to the advent of virtual e-marketplace among complementary organisations. With significant computational...
Agent-based ontology integration for ontology-based applications (2005)
In this paper, a novel agent-based ontology integration framework is developed for agents which consume ontologies in ontology-based applications as well as engage in tasks of ontology integration....
Supply chain protocolling (2005)
Dewan, Mohammed N., Li, Li, Wu, Baolin, Yang, Yun
Faced with the challenges of current e-business powered competitive environments, enterprises now find that it is not adequate to manage their own businesses but also the supply chain. They must be...
Differential gene expression detection using microarrays has received lots research interests recently. Lots of methods have been proposed, including variants of F-statistics (Golub et al. (1999),...
2005a), Agent-based ontology mapping towards ontology interoperability (2005)
Abstract. Globalisation of business environments on the Web has given rise to the advent of similar ontologies in which dynamic ontology mapping is called in. Ontology mapping is necessary for...
Detection of DNA copy number alterations using penalized least squares regression (2005)
Tao Huang, Baolin Wu, Paul Lizardi, Hongyu Zhao
∗ To whom correspondence should be addressed.
Agent-based ontology integration for ontology-based applications (2005)
In this paper, a novel agent-based ontology integration framework is developed for agents which consume ontologies in ontology-based applications as well as engage in tasks of ontology integration....
Agent-based ontology mapping towards ontology interoperability (2005)
Globalisation of business environments on the Web has given rise to the advent of similar ontologies in which dynamic ontology mapping is called in. Ontology mapping is necessary for ontology...
Semantic mapping with multi-agent systems (2005)
This paper introduces a multi-agent system (MAS) architecture and a relevant algorithm for multiple agents to manage and deploy ontologies in a dynamic environment. Firstly, an ontology description...
Ontology-based matchmaking in e-Marketplace with web services (2005)
The proliferation of Internet technology and globalisation of business environment give rise to the advent of virtual e-marketplace among complementary organisations. With significant computational...
Agent-based approach towards ontology refinement in virtual enterprises (2005)
Abstract not available.
Agent-based approach for dynamic ontology management (2005)
In this paper, we present an ontology definition which is helpful in symbolising the ontology and ontology management. By investigating interactions between agents in business scenarios, we adopt the...
Supply chain protocolling (2005)
Dewan, Mohammed N., Li, Li, Wu, Baolin, Yang, Yun
Faced with the challenges of current e-business powered competitive environments, enterprises now find that it is not adequate to manage their own businesses but also the supply chain. They must be...
Value process and business process in e-business modelling (2005)
Dewan, Mohammed N., Wu, Baolin, Yang, Yun
Abstract not available.
A formal approach for deriving business process from value process in e-business modelling (2005)
Dewan, Mohammed N., Wu, Baolin, Yang, Yun
Abstract not available.
Detection of DNA copy number alterations using penalized least squares regression (2005)
Huang, Tao, Wu, Baolin, Lizardi, Paul, Zhao, Hongyu
Motivation: Genomic DNA copy number alterations are characteristic of many human diseases including cancer. Various techniques and platforms have been proposed to allow researchers to partition the...
Summary: Differential gene expression detection using microarrays has received lots of research interests recently. Many methods have been proposed, including variants of F-statistics, non-parametric...
Detection of DNA copy number alterations using penalized least squares regression (2005)
Huang, Tao, Wu, Baolin, Lizardi, Paul, Zhao, Hongyu
Motivation: Genomic DNA copy number alterations are characteristic of many human diseases including cancer. Various techniques and platforms have been proposed to allow researchers to partition the...
Detection of DNA copy number alterations using penalized least squares regression (2005)
Huang, Tao, Wu, Baolin, Lizardi, Paul, Zhao, Hongyu
Motivation: Genomic DNA copy number alterations are characteristic of many human diseases including cancer. Various techniques and platforms have been proposed to allow researchers to partition the...
Differential gene expression detection and sample classification using microarray data have received much research interest recently. Due to the large number of genes p and small number of samples n...
Information assessment on predicting protein-protein interactions (2004)
Lin, Nan, Wu, Baolin, Jansen, Ronald, Gerstein, Mark, Zhao, Hongyu
Abstract Background Identifying protein-protein interactions is fundamental for understanding the molecular machinery of the cell. Proteome-wide studies of protein-protein interactions are of...
An approach to value based e-business modelling (2004)
Dewan, Mohammed N., Wu, Baolin, Yang, Yun
Abstract not available.
Factors-based IST implementation analysis (2004)
Dewan, Mohammed N., Wu, Baolin, Yang, Yun
Abstract not available.
Developing ontology in virtual enterprises (2004)
Abstract not available.
An ontology-oriented approach for virtual enterprises (2004)
An underlying formation of a Virtual Enterprise (VE) is efficient partner selection mechanisms that enable all the partners in the VE being assembled for a short period. In this paper, we present an...
Refinement for ontology evolution in virtual enterprises (2004)
Abstract not available.
Statistical methods in analyzing mass spectrometry dataset / (2004)
Thesis (Ph. D.)--Yale University, 2004.
Statistical methods in analyzing mass spectrometry dataset [microform] / (2004)
Thesis (Ph. D.)--Yale University, 2004.
An approach to value based e-business modelling (2004)
Dewan, Mohammed N., Wu, Baolin, Yang, Yun
Abstract not available.
Factors-based IST implementation analysis (2004)
Dewan, Mohammed N., Wu, Baolin, Yang, Yun
Abstract not available.
Developing ontology in virtual enterprises (2004)
Abstract not available.
An ontology-oriented approach for virtual enterprises (2004)
An underlying formation of a Virtual Enterprise (VE) is efficient partner selection mechanisms that enable all the partners in the VE being assembled for a short period. In this paper, we present an...
Refinement for ontology evolution in virtual enterprises (2004)
Abstract not available.
An approach to value based e-business modelling (2004)
Dewan, Mohammed N., Wu, Baolin, Yang, Yun
Abstract not available.
Factors-based IST implementation analysis (2004)
Dewan, Mohammed N., Wu, Baolin, Yang, Yun
Abstract not available.
Developing ontology in virtual enterprises (2004)
Abstract not available.
An ontology-oriented approach for virtual enterprises (2004)
An underlying formation of a Virtual Enterprise (VE) is efficient partner selection mechanisms that enable all the partners in the VE being assembled for a short period. In this paper, we present an...
Refinement for ontology evolution in virtual enterprises (2004)
Abstract not available.
An approach to value based e-business modelling (2004)
Dewan, Mohammed N., Wu, Baolin, Yang, Yun
Abstract not available.
Factors-based IST implementation analysis (2004)
Dewan, Mohammed N., Wu, Baolin, Yang, Yun
Abstract not available.
Developing ontology in virtual enterprises (2004)
Abstract not available.
An ontology-oriented approach for virtual enterprises (2004)
An underlying formation of a Virtual Enterprise (VE) is efficient partner selection mechanisms that enable all the partners in the VE being assembled for a short period. In this paper, we present an...
Refinement for ontology evolution in virtual enterprises (2004)
Abstract not available.
Weichuan Yu, Baolin Wu, Tao Huang, Xiaoye Li, Kenneth Williams, Hongyu Zhao
Proteomics technologies are rapidly evolving and attracting great attention in the post-genome era. In this chapter, we review two key applications of proteomics techniques: disease biomarker...
Information assessment on predicting protein-protein interactions (2004)
Bmc Bioinformatics, Nan Lin, Baolin Wu, Ronald Jansen, Mark Gerstein, Hongyu Zhao, ...
Research article
An approach to value based e-business modelling (2004)
Dewan, Mohammed N., Wu, Baolin, Yang, Yun
Abstract not available.
Factors-based IST implementation analysis (2004)
Dewan, Mohammed N., Wu, Baolin, Yang, Yun
Abstract not available.
Developing ontology in virtual enterprises (2004)
Abstract not available.
An ontology-oriented approach for virtual enterprises (2004)
An underlying formation of a Virtual Enterprise (VE) is efficient partner selection mechanisms that enable all the partners in the VE being assembled for a short period. In this paper, we present an...
Refinement for ontology evolution in virtual enterprises (2004)
Abstract not available.
Statistical method for identifying differential gene-gene coexpression patterns (2004)
Lai, Yinglei, Wu, Baolin, Chen, Liang, Zhao, Hongyu
Motivation: To understand cancer etiology, it is important to explore molecular changes in cellular processes from normal state to cancerous state. Because genes interact with each other during...
Differential gene expression detection using microarrays has received lots research interests recently. Lots of methods have been proposed, including variants of F-statistics (Golub et al. (1999),...
A statistical method for identifying differential gene-gene co-expression patterns (2004)
Lai, Yinglei, Wu, Baolin, Chen, Liang, Zhao, Hongyu
Motivation: To understand cancer etiology, it is important to explore molecular changes in cellular processes from normal state to cancerous state. Because genes interact with each other during...
Statistical method for identifying differential gene-gene coexpression patterns (2004)
Lai, Yinglei, Wu, Baolin, Chen, Liang, Zhao, Hongyu
Motivation: To understand cancer etiology, it is important to explore molecular changes in cellular processes from normal state to cancerous state. Because genes interact with each other during...
Differential gene expression detection using microarrays has received lots research interests recently. Lots of methods have been proposed, including variants of F-statistics (Golub et al. (1999),...
Wu, Baolin, Abbott, Tom, Fishman, David, McMurray, Walter, Mor, Gil, Stone, Kathryn, ...
Motivation: Novel methods, both molecular and statistical, are urgently needed to take advantage of recent advances in biotechnology and the human genome project for disease diagnosis and prognosis....
Evolutionary strategies for function optimization, fuzzy modeling and control (2001)
Bibliography: leaves 178-194. 1. Introduction -- 2. Global function optimization -- 3. Constrained function optimization -- 4. Fuzzy logic and fuzzy systems -- 5. Evolutionary fuzzy systems -- 6....
Fuzzy modelling and identification with genetic algorithms based learning (1996)
Photocopy. Bibliography: leaves 97-107. Project examines a practical approach for complex system modelling using fuzzy logic. This approach is usually called fuzzy modelling.
Mathematical models for the simulation of cyclonic storm sequences and precipitation fields. (1975)
Thesis--University of California, 1973.
Information assessment on predicting protein-protein interactions
Lin, Nan, Wu, Baolin, Jansen, Ronald, Gerstein, Mark, Zhao, Hongyu
Carriero, Nicholas, Osier, Michael V., Cheung, Kei-Hoi, Miller, Perry L., Gerstein, Mark, Zhao, Hongyu, ...
The rapid advances in high-throughput biotechnologies such as DNA microarrays and mass spectrometry have generated vast amounts of data ranging from gene expression to proteomics data. The large size...
Information assessment on predicting protein-protein interactions
Lin, Nan, Wu, Baolin, Jansen, Ronald, Gerstein, Mark, Zhao, Hongyu
Carriero, Nicholas, Osier, Michael V., Cheung, Kei-Hoi, Miller, Perry L., Gerstein, Mark, Zhao, Hongyu, ...
The rapid advances in high-throughput biotechnologies such as DNA microarrays and mass spectrometry have generated vast amounts of data ranging from gene expression to proteomics data. The large size...
Functional group-based linkage analysis of gene expression trait loci
Li, Na, Wu, Baolin, Wei, Peng, Xie, Benhuai, Xie, Yang, Xiao, Guanghua, ...
We explored approaches to using multiple related traits (gene expression levels) in linkage analysis. We first grouped mRNA transcripts according to their functions annotated in biological process of...
Bayesian Mass Spectra Peak Alignment from Mass Charge Ratios
Liu, Junfeng, Yu, Weichuan, Wu, Baolin, Zhao, Hongyu
Proteomics studies based on mass spectrometry (MS) are gaining popular applications in biomedical research for protein identification/quantification and biomarker discovery, especially for potential...
Ovarian Cancer Classification based on Mass Spectrometry Analysis of Sera
Wu, Baolin, Abbott, Tom, Fishman, David, McMurray, Walter, Mor, Gil, Stone, Kathryn, ...
In our previous study [1], we have compared the performance of a number of widely used discrimination methods for classifying ovarian cancer using Matrix Assisted Laser Desorption Ionization (MALDI)...