Computation-Directed Identification of OxyR DNA Binding Sites in Escherichia coli (2001)
Ming Zheng, Xunde Wang, Bernard Doan, Karen A. Lewis, Thomas D. Schneider, Gisela Storz
A computational search was carried out to identify additional targets for the Escherichia coli OxyR transcription factor. This approach predicted OxyR binding sites upstream of dsbG, encoding a...
Computation-Directed Identification of OxyR DNA Binding Sites in Escherichia coli
Zheng, Ming, Wang, Xunde, Doan, Bernard, Lewis, Karen A., Schneider, Thomas D., Storz, Gisela
A computational search was carried out to identify additional targets for the Escherichia coli OxyR transcription factor. This approach predicted OxyR binding sites upstream of dsbG, encoding a...
OxyR and SoxRS Regulation of fur
Zheng, Ming, Doan, Bernard, Schneider, Thomas D., Storz, Gisela
The cytotoxic effects of reactive oxygen species are largely mediated by iron. Hydrogen peroxide reacts with iron to form the extremely reactive and damaging hydroxyl radical via the Fenton reaction....
Dahl, John L., Kraus, Carl N., Boshoff, Helena I. M., Doan, Bernard, Foley, Korrie, Avarbock, David, ...
Long-term survival of nonreplicating Mycobacterium tuberculosis (Mtb) is ensured by the coordinated shutdown of active metabolism through a broad transcriptional program called the stringent...
Computation-Directed Identification of OxyR DNA Binding Sites in Escherichia coli
Zheng, Ming, Wang, Xunde, Doan, Bernard, Lewis, Karen A., Schneider, Thomas D., Storz, Gisela
A computational search was carried out to identify additional targets for the Escherichia coli OxyR transcription factor. This approach predicted OxyR binding sites upstream of dsbG, encoding a...
OxyR and SoxRS Regulation of fur
Zheng, Ming, Doan, Bernard, Schneider, Thomas D., Storz, Gisela
The cytotoxic effects of reactive oxygen species are largely mediated by iron. Hydrogen peroxide reacts with iron to form the extremely reactive and damaging hydroxyl radical via the Fenton reaction....
Dahl, John L., Kraus, Carl N., Boshoff, Helena I. M., Doan, Bernard, Foley, Korrie, Avarbock, David, ...
Long-term survival of nonreplicating Mycobacterium tuberculosis (Mtb) is ensured by the coordinated shutdown of active metabolism through a broad transcriptional program called the stringent...
Discovery of Fur binding site clusters in Escherichia coli by information theory models
Chen, Zehua, Lewis, Karen A., Shultzaberger, Ryan K., Lyakhov, Ilya G., Zheng, Ming, Doan, Bernard, ...
Fur is a DNA binding protein that represses bacterial iron uptake systems. Eleven footprinted Escherichia coli Fur binding sites were used to create an initial information theory model of Fur...