Bin Liu

Publication List Details

Period

0000 - 2009

Number

274

Co-Authors

Bone marrow mesenchymal stem cells from leukemia patients inhibit growth and apoptosis in serum-deprived K562 cells (2009)

Wei, Zhaohui, Chen, Naiyao, Guo, Hongxing, Wang, Xueming, Xu, Fangyun, Ren, Qian, ...

Abstract Background The regulation of growth and apoptosis in K562 cells by human bone marrow mesenchymal stem cells (MSCs) from leukemia patients was investigated. Methods K562 cells were cocultured...

Dynamically forced cells of a viscoelastic fluid over an array of rollers (2009)

Liu, Bin, Zhang, Jun, Shelley, Michael

Our fluid dynamics video shows the response of a layer of viscoelastic fluid to an array of four-roll mills steadily rotating underneath. When the relaxation time of the fluid is sufficiently long,...

Dynamically forced cells of a viscoelastic fluid over an array of rollers (2009)

Liu, Bin, Zhang, Jun, Shelley, Michael

Our fluid dynamics video shows the response of a layer of viscoelastic fluid to an array of four-roll mills steadily rotating underneath. When the relaxation time of the fluid is sufficiently long,...

Vortex shedding and hovering of a rigid body in an oscillating flow (2009)

Liu, Bin, Weathers, Annie, Childress, Stephen, Zhang, Jun

The fluid dynamics video shows rigid, spatially asymmetric bodies interacting with oscillating background flows. A free rigid object, here a hollow ``pyramid," can hover quite stably against gravity...

Vortex shedding and hovering of a rigid body in an oscillating flow (2009)

Liu, Bin, Weathers, Annie, Childress, Stephen, Zhang, Jun

The fluid dynamics video shows rigid, spatially asymmetric bodies interacting with oscillating background flows. A free rigid object, here a hollow "pyramid," can hover quite stably against gravity...

Dynamically forced cells of a viscoelastic fluid over an array of rollers (2009)

Liu, Bin, Zhang, Jun, Shelley, Michael

Our fluid dynamics video shows the response of a layer of viscoelastic fluid to an array of four-roll mills steadily rotating underneath. When the relaxation time of the fluid is sufficiently long,...

Polymorphisms of the ICAM-1exon 6 (E469K) are associated with differentiation of colorectal cancer (2009)

Wang, Qing-lei, Li, Bing-hui, Liu, Bin, Liu, Ya-bin, Liu, Yue-Ping, Miao, Sui-Bing, ...

Abstract Background Genetic factors are thought to play a role in development for colorectal carcinogenesis. ICAM-1 is a polymorphic gene, thus, the present study investigated the relationship...

Stochastic Optimization of Distributed Sampling System Placement for Passive Measurement * (2009)

Chengchen Hu, Bin Liu, Zhen Liu, Shifang Gao, Dapeng Oliver Wu

Abstract. Flow-level traffic measurement is important for network traffic accounting, traffic engineering, and network security. However, flow-level measurement in high speed networks poses great...

Control Estimation Error of Sampling Method for Passive Measurement (2009)

Chengchen Hu, Sheng Wang, Jia Tian, Bin Liu

Abstract 1 — Sampling is increasingly utilized by passive measurement systems to save the resources consumption. However, the widely adopted static linear sampling selects packets with the same...

Copyright q (2009)

Chengchen Hu, Wenjie Li, Xuefei Chen, Bin Liu, John Wiley

Performance comparison between fixed length switching and

Design of Modified RED Implemented in a Class Based CIOQ Switch (2009)

Chengchen Hu, Bin Liu

(CIOQ) switch with a certain speedup of S (1<S<N) can achieve 100 % throughput and offer QoS guarantees. In this paper, we present the deployment of Random Early Detection (RED) on a CIOQ...

Accurate and Efficient Traffic Monitoring Using Adaptive Non-linear Sampling Method (2009)

Chengchen Hu, Sheng Wang, Jia Tian, Bin Liu, Yu Cheng, Yan Chen

Abstract—Sampling technology has been widely deployed in measurement systems to control memory consumption and processing overhead. However, most of the existing sampling methods suffer from large...

Mitochondrial Introgressions into the Nuclear Genome of the Domestic Horse (2009)

JIANG, Feng, MIAO, Yong-wang, LIU, Bin, SHEN, Xin, REN, Jian-feng, HE, Fan

The nuclear insertions of mitochondrial DNA (Numts), which originate from the integration of nuclear DNA by mtDNA, are found as molecular fossils in the nuclear genomes of various eukaryotes. Because...

Seasonal Dynamics of the Avian Guild Structure of Mountain Secondary Forest in Dabieshan Mountain (2009)

LIU, Bin, ZHOU, Li-zhi, WANG, Wen-ge, SHEN, San-bao, HAN, De-min

Between December 2007 and December 2008, we studied the avian guilds structure of the secondary broad-leaved forests in Yaoluoping, Dabieshan Mountain, Anhui Province. We used focal sampling method...

Cost-Driven View Maintenance over Distributed Data Sources ∗ (2009)

Bin Liu, Elke A. Rundensteiner

Materialized views defined over distributed data sources are a well recognized technology in data integration, e-business, and semantic web. Many algorithms have been proposed to date for...

Agrobacterium rhizogenes-mediated transformation of Superroot-derived Lotus corniculatusplants: a valuable tool for functional genomics (2009)

Jian, Bo, Hou, Wensheng, Wu, Cunxiang, Liu, Bin, Liu, Wei, Song, Shikui, ...

Abstract Background Transgenic approaches provide a powerful tool for gene function investigations in plants. However, some legumes are still recalcitrant to current transformation technologies,...

Shapiro-like Resonance in Ultracold Molecule Production via an Oscillating Magnetic Field (2009)

Liu, Bin, Fu, Li-Bin, Liu, Jie

We study the process of production of ultracold molecules from ultracold atoms using a sinusoidally oscillating magnetic field modulation. When the magnetic field is resonant roughly with the...

Large extensibility and strong backbone of protein are essential for the toughness of natural materials (2009)

Liu, Bin, Huang, Yonggang, Gao, Huajian

Protein-based natural materials and fibers display superior strength and toughness, which have been attributed to the parallel staggered arrangement of microstructure, as well as to the unique...

Efficient and Low-Cost Hardware Defense Against DNS Amplification Attacks (2009)

Changhua Sun, Bin Liu, Lei Shi

Abstract—DNS amplification attacks utilize IP address spoofing and large numbers of open recursive DNS servers to perform the bandwidth consumption attack. During an attack, it ceaselessly...

Optimization of Energy Efficient Transmission in Underwater Sensor Networks (2009)

Yang, Hongkun, Liu, Bin

Underwater communication is a challenging topic due to its singular channel characteristics. Most protocols used in terrestrial wireless communication can not be directly applied in the underwater...

A mouse chromosome 4 balancer ENU-mutagenesis screen isolates eleven lethal lines (2009)

Boles, Melissa K, Wilkinson, Bonney M, Maxwell, Andrea, Lai, Lihua, Mills, Alea A, Nishijima, Ichiko, ...

Abstract Background ENU-mutagenesis is a powerful technique to identify genes regulating mammalian development. To functionally annotate the distal region of mouse chromosome 4, we performed an...

"Tandem duplication-random loss" is not a real feature of oyster mitochondrial genomes (2009)

Ren, Jianfeng, Liu, Xiao, Zhang, Guofan, Liu, Bin, Guo, Ximing

Abstract Duplications and rearrangements of coding genes are major themes in the evolution of mitochondrial genomes, bearing important consequences in the function of mitochondria and the fitness of...

Max-min Utility Fairness in Link Aggregated Systems (2009)

Satya R. Mohanty, Changbin Liu, Bin Liu, Laxmi N. Bhuyan

Abstract — We consider utility max-min fairness of application traffic of a Next Generation Internet (NGI) service model contending for network bandwidth. The physical infrastructure that offers...

Clustered K-Center: Effective Replica Placement in Peer-to-Peer Systems (2009)

Jian Zhou, Xin Zhang, Laxmi Bhuyan, Bin Liu

Abstract — Peer-to-Peer (P2P) systems provide decentralization, self-organization, scalability and failure-resilience, but suffer from high worst-case latencies. Researchers have proposed various...

IPv6-Oriented 4×OC-768 Packet Classification with Deriving-Merging Partition and Field-Variable Encoding Algorithm i (2009)

Xin Zhang, Bin Liu, Wei Li, Ying Xi, David Bermingham, Xiaojun Wang

Abstract—Packet Classification serves as a plinth for many newly emerging network applications. Most of the previous packet classification schemes are IPv4-oriented, and some of them have achieved...

Poly[(μ-5,7-dihydroxy-4-oxo-2-phenyl-4H-chromene-8-sulfonato)potassium(I)] (2009)

Bin Liu, Bo-Lun Yang

In the polymeric title compound, [K(C15H9O7S)]n, the potassium cation is five-coordinated by four sulfonate O atoms and one carbonyl O atom. Two intramolecular O—H...O hydrogen bonds stabilize...

(Z)-Ethyl 2,4-diphenyl-3-(propylamino)but-2-enoate (2009)

Huimin Jin, Peifan Li, Bin Liu, Xiaoqing Cheng

The title compound, C21H25NO2, adopts a Z conformation about the C=C double bond. The molecular structure is stabilized by an intramolecular N—H...O hydrogen bond and the dihedral angle between...

2-(4-Fluoroanilino)-3-(2-hydroxyethyl)quinazolin-4(3H)-one (2009)

Qian Zhang, Yuan-Hong Jiao, Bin Liu, Xue-Mei Chen, Min Ruan, Ling-Hua Xu

The molecular and crystal structures of the title compound, C16H14FN3O2, are stabilized by intramolecular N—H...O and intermolecular O—H...O hydrogen bonds. The existence of non-classical...

Direct growth of enclosed ZnO nanotubes (2009)

Liu, Bin, Zeng, Hua Chun

To date, wet syntheses of single-crystalline ZnO micro- and nanotubes have been carried out using a two-step indirect approach in which a selective dissolution step is required in order to create the...

3-Hydroxy-3-[(2-methylpropanoyl)methyl]indolin-2-one (2009)

Gang Chen, Bin Liu, Ying Tang, Jingfang Xu

The title compound, C13H15NO3, was synthesized by the Aldol reaction of isatin and 3-methylbutan-2-one refluxing in methanol catalyzed by dimethylamine. The packing of the molecules in the crystal...

Thwarting Virtual Bottlenecks in Multi-Bitrate Streaming Servers (2008)

Bin Liu, Raju Rangaswami

Current cycle-based disk IO schedulers for multi-bitrate streaming servers are unable to avoid the formation of virtual bottlenecks. We term a bottleneck as virtual when it occurs within a single...

DPPC-RE: TCAM-Based Distributed Parallel Packet Classification with Range Encoding (2008)

Kai Zheng, Student Member, Hao Che, Zhijun Wang, Bin Liu, Xin Zhang

Abstract—Packet classification has been a critical data path function for many emerging networking applications. An interesting approach is the use of Ternary Content Addressable Memory (TCAM) to...

ACCEPTED MANUSCRIPT (2008)

Lei Shi, Changbin Liu, Bin Liu, Lei Shi, Changbin Liu, Bin Liu, ...

This is a PDF file of an unedited manuscript that has been accepted for publication. As a service to our customers we are providing this early version of the manuscript. The manuscript will undergo...

Utility-based bandwidth allocation for triple-play services (2008)

Changbin Liu, Lei Shi, Bin Liu

It is expected that, in near future, the multi-class traffic previously in Public Switched Telephone network (PSTN), cable television network and IP network will be multiplexed at backbone and...

A discriminative method for protein remote homology detection and fold recognition combining Top-n-grams and latent semantic analysis (2008)

Liu, Bin, Wang, Xiaolong, Lin, Lei, Dong, Qiwen, Wang, Xuan

Abstract Background Protein remote homology detection and fold recognition are central problems in bioinformatics. Currently, discriminative methods based on support vector machine (SVM) are the most...

Time correlation functions and transport coefficients of two-dimensional Yukawa liquids (2008)

Donko, Zoltan, Goree, John, Hartmann, Peter, Liu, Bin

The existence of coefficients for diffusion, viscosity and thermal conductivity is examined for two-dimensional (2D) liquids. Equilibrium molecular dynamics simulations are performed using a Yukawa...

Route table partitioning and load balancing for parallel searching with TCAMs (2008)

Dong Lin, Yue Zhang, Chengchen Hu, Bin Liu, Xin Zhang, Derek Pao

With the continuous advances in optical communications technology, the link transmission speed of Internet backbone has been increasing rapidly. This in turn demands more powerful IP address lookup...

A Memory-Efficient Parallel String Matching Architecture for High-Speed Intrusion Detection (2008)

Hongbin Lu, Student Member, Kai Zheng, Student Member, Bin Liu, Xin Zhang, ...

Abstract—The ability to inspect both packet headers and payloads to identify attack signatures makes network intrusion detection system (NIDS) a promising approach to protect Internet systems....

Validation of internal control for gene expression study in soybean by quantitative real-time PCR (2008)

Jian, Bo, Liu, Bin, Bi, Yurong, Hou, Wensheng, Wu, Cunxiang, Han, Tianfu

Abstract Background Normalizing to housekeeping gene (HKG) can make results from quantitative real-time PCR (qRT-PCR) more reliable. Recent studies have shown that no single HKG is universal for all...

Spin-resolved impurity resonance states in electron-doped cuprate superconductors (2008)

Liu, Bin, Liang, Ying, Yuan, Feng

This paper has been withdrawn by the author due to some insufficient discussions on Fig. 3.

Development and evaluation of a high-throughput, low-cost genotyping platform based on oligonucleotide microarrays in rice (2008)

Edwards, Jeremy D, Janda, Jaroslav, Sweeney, Megan T, Gaikwad, Ambika B, Liu, Bin, Leung, Hei, ...

Abstract Background We report the development of a microarray platform for rapid and cost-effective genetic mapping, and its evaluation using rice as a model. In contrast to methods employing...

Solid superheating observed in two-dimensional strongly-coupled dusty plasma (2008)

Feng, Yan, Goree, J., Liu, Bin

It is demonstrated experimentally that strongly-coupled plasma exhibits solid superheating. A 2D suspension of microspheres in dusty plasma, initially self-organized in a solid lattice, was heated...

This w... (2008)

Songting Chen, Bin Liu, Elke A. Rundensteiner

Materialized views can be maintained by submitting maintenance queries to the data sources. However, the query results may be erroneous due to concurrent source updates. State-of-the-art maintenance...

LISTEN (2008)

Changhua Sun, Jindou Fan, Lei Shi, Bin Liu, Syn J, Fin M, ...

TCP three-way three way handshake •In In SYN_RCVD, the server allocates resources •Then Then if the client does not send the final ACK, the server’s server s resources can be easily exhausted...

Toward a Distributed Terabyte Text Retrieval System in China-US Million Book Digital Library (2008)

Bin Liu, Wen Gao, Ling Zhang

In China-US Million Book Digital Library, output of the digitalization process is more than one terabyte of text in OEB and PDF format. To access these data quickly and accurately, we are developing...

Michigan Molecular Interactions (MiMI): Putting the Jigsaw Puzzle Together (2008)

Magesh Jayap, Adriane Chapman, V. Glenn Tarcea, Cong Yu, Aaron Elkiss, Angela Ianni, ...

Protein interaction data exists in a number of repositories. Each repository has its own data format, molecule identifier and supplementary information. Michigan Molecular Interactions (MiMI) assists...

Index Terms (2008)

Bin Liu, Biao Chen, Rick S. Blum

In wireless networks, user cooperation has been proposed to mitigate the effect of multipath fading channels. Recognizing the connection between cooperative relay with finite alphabet sources and the...

Impurity resonance states in noncentrosymmetric superconductor $CePt_{3}Si$: a probe for Cooper-pairing symmetry (2008)

Liu, Bin, Eremin, Ilya

Motivated by the recent discovery of noncentrosymmetric superconductors, such as $CePt_{3}Si$, $CeRhSi_{3}$ and $CeIrSi_{3}$, we investigate theoretically the impurity resonance states with...

Spectral Measure of Robustness in Complex Networks (2008)

Wu, Jun, Tan, Yue-Jin, Deng, Hong-Zhong, Li, Yong, Liu, Bin, Lv, Xin

We introduce the concept of natural connectivity as a robustness measure of complex networks. The natural connectivity has a clear physical meaning and a simple mathematical formulation. It...

Route table partitioning and load balancing for parallel searching with TCAMs (2008)

Dong Lin, Yue Zhang, Chengchen Hu, Bin Liu, Xin Zhang, Derek Pao

With the continuous advances in optical communications technology, the link transmission speed of Internet backbone has been increasing rapidly. This in turn demands more powerful IP address lookup...

Optimal Deployment of Distributed Passive Measurement Monitors ✝ (2008)

Chengchen Hu, Bin Liu, Zhen Liu, Shifang Gao, Dapeng Wu

Abstract: Flow-level traffic measurement is important for network management. The widely used centralized per-flow measurement faces a great challenge due to the demanding requirement on both memory...

On the Deployment Strategy of Distributed Network Security Sensors Abstract—Current centralized Network Intrusion Detection (2008)

Chengchen Hu, Zhen Liu, Zhen Chen, Bin Liu

Systems (NIDS) typically position their sensors at the network access aggregation points and have several limitations on performance and effectiveness. We propose the deployment of “Distributed...

RED with Optimized Dynamic Threshold Deployment on Shared Buffer (2008)

Chengchen Hu, Bin Liu

Prior survey of RED algorithm deployment on multiqueue system with shared buffer was unfair and sensitive to congestion level by statically setting the parameters. In this paper, our goal is to...

Using Temporal Semantics for Live Media Stream Queries (2008)

Bin Liu, Amarnath Gupta, Ramesh Jain

Abstract. Querying live media streams is a challenging problem that becomes an essential requirement in a growing number of applications. We address the problem of evaluating continuous queries on...

Fuzzy Optimization for Security Sensors Deployment in Collaborative Intrusion Detection System (2008)

Chengchen Hu, Zhen Liu, Zhen Chen, Bin Liu

Abstract. This paper argues about the deployment positions of Network-based Intrusion Detection System and suggests the “Distributed Network Security Sensors ” distributed among the nodes of the...

Fixed-Length Switching vs. Variable-Length Switching in Input-Queued IP Switches (2008)

Chengchen Hu, Xuefei Chen, Wenjie Li, Bin Liu

Abstract—Many large-scale, high speed routers adopt inputqueued switches with virtual output queuing (VOQ) for preventing head of line (HOL) blocking. Switching based on cellby-cell scheduling...

Per-flow Queueing by Dynamic Queue Sharing (2008)

Chengchen Hu, Yi Tang, Xuefei Chen, Bin Liu

Abstract — Per-flow queuing is believed to be able to guarantee advanced Quality of Service (QoS) for each flow. With the dramatic increase of link speed and number of traffic flows, perflow...

A Trace Driven Comparison of Latency Hiding Techniques for Network Processors (2008)

Zhen Liu, Hao Che, Kai Zheng, Shanzhen Chen, Chengchen Hu, Bin Liu

Abstract—Caching, multithreading and the combination of them are the major latency hiding techniques adopted in network processors (NPs). Although they achieve great success in general purpose...

DRES: Dynamic Range Encoding Scheme for (2008)

Tcam Coprocessors Hao, Hao Che, Zhijun Wang, Kai Zheng, Bin Liu

One of the most critical resource management issues in the use of ternary content addressable memory (TCAM) for packet classification/filtering is how to effectively support filtering rules with...

Genetic Characterization of the Escherichia coli O66 Antigen and Functional Identification of its wzy Gene (2008)

Cheng, Jiansong, Liu, Bin, Bastin, David A., Han, Weiqing, Wang, Lei, Feng, Lu

Escherichia coli is a clonal species, and occurs as both commensal and pathogenic strains, which are normally classified on the basis of their O, H, and K antigens. The O-antigen (O-specific...

Superdiffusion and non-Gaussian statistics in a driven-dissipative 2D dusty plasma (2008)

Liu, Bin, Goree, J.

Anomalous diffusion and non-Gaussian statistics are detected experimentally in a two-dimensional driven-dissipative system. A single-layer dusty plasma suspension with a Yukawa interaction and...

Robust Impulsive Synchronization of Discrete Dynamical Networks (2008)

Ming Lei, Bin Liu

We aim to study robust impulsive synchronization problem for uncertain discrete dynamical networks. For the discrete dynamical networks with unknown but bounded network coupling, we will design some...

Hexaaqua(5,7-dihydroxy-4-oxo-2-phenyl-4H-chromene-8-sulfonato)calcium(II) 5,7-dihydroxy-4-oxo-2-phenyl-4H-chromene-8-sulfonate trihydrate (2008)

Bin Liu, Bo-Lun Yang

In the title compound, [Ca(C15H9O7S)(H2O)6](C15H9O7S)·3H2O, the Ca centre has a distorted decahedral geometry, coordinated by six O atoms from water molecules and one sulfonate O atom. The...

Robust Impulsive Synchronization of Discrete Dynamical Networks (2008)

Ming Lei, Bin Liu

We aim to study robust impulsive synchronization problem for uncertain discrete dynamical networks. For the discrete dynamical networks with unknown but bounded network coupling, we will design some...

Hypoxia-inducible factor (HIF)-1{alpha} directly enhances the transcriptional activity of stem cell factor (SCF) in response to hypoxia and epidermal growth factor (EGF) (2008)

Han, Zhi-Bo, Ren, He, Zhao, Hui, Chi, Ying, Chen, Ke, Zhou, Bin, ...

Stem cell factor (SCF) plays important roles in tumor growth and angiogenesis. However, its regulatory mechanism remains largely undefined. Here, we report that hypoxia upregulated the expression of...

Many-Body Effects on Nonadiabatic Feshbach Conversion in Bosonic Systems (2007)

Liu, Jie, Liu, Bin, Fu, Libin

We investigate the dynamics of converting cold bosonic atoms to molecules when an external magnetic field is swept across a Feshbach resonance. Our analysis relies on a zero temperature quantum...

Density of state and non-magnetic impurity effects in electron-doped cuprates (2007)

Liu, Bin, Liang, Ying

We analyze the density of state (DOS) and a non-magnetic impurity effect in electron-doped cuprates starting from two different scenarios: the $d_{x^{2}-y^{2}}$-wave superconductivity coexisting with...

Cost-Driven View Maintenance over Distributed Data Sources (2007)

Bin Liu, Bin Liu, Elke A. Rundensteiner, Elke A. Rundensteiner

Materialized views dened over distributed data sources are a well recognized technology for data integration, e-business, and data warehousing. Many algorithms have been proposed to date for...

Quantitative investigation of certain properties of slot mechanisms (2007)

Fei Xia, Bin Liu

Abstract. The slot asynchronous communication mechanisms (ACMs) have been studied in qualitative detail in their main properties data coherence and data freshness. Certain other properties have so...

MEMS-Based Optical Beam Steering System for Quantum Information Processing in 2D Atomic Systems (2007)

Knoernschild, Caleb, Kim, Changsoon, Liu, Bin, Lu, Felix P., Kim, Jungsang

In order to provide scalability to quantum information processors utilizing trapped atoms or ions as quantum bits (qubits), the capability to address multiple individual qubits in a large array is...

Exploring cell type-specific internalizing antibodies for targeted delivery of siRNA (2007)

Liu, Bin

A major challenge to the development of therapeutic small interfering RNAs (siRNAs) is specific and efficient in vivo delivery to target cells. Recent studies suggest that cell type-specific gene...

Regional Variation in the Density of Essential Genes in Mice (2007)

Kathryn E. Hentges, David D. Pollock, Bin Liu, Monica J. Justice

In most species, and particularly in vertebrates, the percentage of genes absolutely required for survival, the essential genes, has not been estimated. To obtain this estimation, we used the mouse...

Role of Particle Interactions in the Feshbach Conversion of Fermion Atoms to Bosonic Molecules (2007)

Liu, Jie, Fu, Li-Bin, Liu, Bin, Wu, Biao

We investigate the Feshbach conversion of fermion atomic pairs to condensed boson molecules with a microscopic model that accounts the repulsive interactions among all the particles involved. We find...

Porcine transcriptome analysis based on 97 non-normalized cDNA libraries and assembly of 1,021,891 expressed sequence tags (2007)

Gorodkin, Jan, Cirera, Susanna, Hedegaard, Jakob, Gilchrist, Michael J, Panitz, Frank, Jørgensen, Claus, ...

Background Knowledge of the structure of gene expression is essential for mammalian transcriptomics research. We analyzed a collection of more than one million porcine expressed sequence tags (ESTs),...

Regional variation in the density of essential genes in mice (2007)

Kathryn Hentges, David D. Pollock, Bin Liu, Monica J Justice

In most species, and particularly in vertebrates, the percentage of genes absolutely required for survival, the essential genes, has not been estimated. To obtain this estimation, we used the mouse...

Synthesis, herbicidal, fungicidal and insecticidal evaluation of 3-(dichlorophenyl)- isocoumarins and (±)-3-(dichlorophenyl)-3,4-dihydroisocoumarins (2007)

Qadeer,Ghulam, Rama,Nasim Hasan, Fan,Zhi-Jin, Liu,Bin, Liu,Xiu-Feng

This is the first report showing that 3-(dichlorophenyl)isocoumarins and (±)-3,4-dihydroisocoumarins are plant and plant fungus growth inhibitors. 3-Dichlorophenylisocoumarins were synthesized...

Improving promotional effectiveness through supplier-retailer collaboration (2007)

Liu, Bin

Thesis (M. Eng. in Logistics)--Massachusetts Institute of Technology, Engineering Systems Division, 2007.

Improving promotional effectiveness through supplier-retailer collaboration (2007)

Liu, Bin

Thesis (M. Eng. in Logistics)--Massachusetts Institute of Technology, Engineering Systems Division, 2007.

Flow-Slice: A Novel Load-Balancing Scheme for Multi-Path Switching Systems (2007)

Lei Shi, Bin Liu, Changhua Sun, Zhengyu Yin, Laxmi Bhuyan, H. Jonathan Chao

Multi-Path Switching systems (MPS) are intensively used in the state-of-the-art core routers. One of the most intractable issues is how to load-balance traffic across its multiple paths while not...

2007 Gorodkin et Volume al. 8, Issue 4, Article R45 Open Access (2007)

Jan Gorodkin, Susanna Cirera, Jakob Hedegaard, Michael J Gilchrist, Frank Panitz, Claus Jørgensen, ...

Porcine transcriptome analysis based on 97 non-normalized cDNA libraries and assembly of 1,021,891 expressed sequence tags

DRR-SFF: A Practical Scheduling Algorithm to Improve the Performance of Short Flows (2007)

Changhua Sun, Lei Shi, Chengchen Hu, Bin Liu

Abstract — Short flow first scheduling (SFF) strategy is effective in obtaining more stringent performance bounds for short flows in Internet. However, previous strict SFF approaches invested the...

A Robust Scheme to Detect SYN Flooding Attacks (2007)

Changhua Sun, Jindou Fan, Bin Liu

Abstract—We propose a more robust scheme to detect SYN flooding attacks. Existing methods for detecting SYN flooding are based on the protocol behavior of TCP SYN–FIN (RST) or SYN–ACK pairs, as...

A novel router-based scheme to mitigate SYN flooding DDoS attacks (2007)

Changhua Sun, Jindou Fan, Lei Shi, Bin Liu

Distributed Denial-of-Service (DDoS) attack remains a serious problem on the Internet today, as it takes advantage of the lack of authenticity in the IP protocol, destination oriented routing, and...

Decentralized Detection in Wireless Sensor Networks with Channel Fading Statistics (2007)

Bin Liu, Biao Chen

Existing channel aware signal processing design for decentralized detection in wireless sensor networks typically assumes the clairvoyant case, that is, global channel state information (CSI) is...

Molecular Characterization of Plantain Class I Chitinase Gene and its Expression in Response to Infection by Gloeosporium musarum Cke and Massee and other Abiotic Stimuli (2007)

Fan, Jianming, Wang, Hongbin, Feng, Dongru, Liu, Bin, Liu, Haiyan, Wang, Jinfa

We have cloned a chitinase cDNA (MpChi-1) from plantain (Musa paradisiacal L) using rapid amplification of cDNA ends (RACE) according to a sequence fragment which we had cloned using the suppression...

Voltage Island Generation in Cell Based Dual-Vdd Design (2007)

CAI, Yici, LIU, Bin, ZHOU, Qiang, HONG, Xianlong

The voltage island style has been widely accepted as an effective way to design low power high performance chips. This paper proposes an automated voltage island generation flow in standard cell...

Michigan Molecular Interactions (MiMI): putting the jigsaw puzzle together (2007)

Jayapandian, Magesh, Chapman, Adriane, Tarcea, V. Glenn, Yu, Cong, Elkiss, Aaron, Ianni, Angela, ...

Protein interaction data exists in a number of repositories. Each repository has its own data format, molecule identifier and supplementary information. Michigan Molecular Interactions (MiMI) assists...

Josephson Oscillation and Transition to Self-Trapping for Bose-Einstein-Condensates in a Triple-Well Trap (2006)

Liu, Bin, Fu, Li-Bin, Yang, Shi-Ping, Liu, Jie

We investigate the tunnelling dynamics of Bose-Einstein-Condensates(BECs) in a symmetric as well as in a tilted triple-well trap within the framework of mean-field treatment. The eigenenergies as the...

Implicit Density Functional Theory (2006)

Liu, Bin, Percus, Jerome K.

A fermion ground state energy functional is set up in terms of particle density, relative pair density, and kinetic energy tensor density. It satisfies a minimum principle if constrained by a...

Heat transport of electron-doped Cobaltates (2006)

Liu, Bin, Liang, Ying, Feng, Shiping, Chen, Wei Yeu

Within the t-J model, the heat transport of electron-doped cobaltates is studied based on the fermion-spin theory. It is shown that the temperature dependent thermal conductivity is characterized by...

Development of 2-DOF haptic devices working with magnetorheological fluids (2006)

Liu, Bin

The thesis presents the design and development of a 2-DOF (degree of freedom) magnetorheological (MR) fluid based haptic joystick and studies its applications in virtual reality. MR fluids are...

Decentralized Detection in Wireless Sensor Networks with Channel Fading Statistics (2006)

Bin Liu, Biao Chen

Existing channel aware signal processing design for decentralized detection in wireless sensor networks typically assumes the clairvoyant case, that is, global channel state information (CSI) is...

Development of 2-DOF haptic devices working with magnetorheological fluids (2006)

Liu, Bin

The thesis presents the design and development of a 2-DOF (degree of freedom) magnetorheological (MR) fluid based haptic joystick and studies its applications in virtual reality. MR fluids are...

Online algorithm for application layer anycast (2006)

Yu, Shui, Li, Zhongwen, Liu, Bin

Application layer anycast possesses the property of flexibility, however, all the proposed application layer anycast routing algorithms are based on probing so far. One disadvantage of probing...

Integrating Heterogeneous Network Monitoring Data - An Experimental Approach (2006)

Chi Zhang, Bin Liu, Xun Su, Heidi Alvarez, Julio Ibarra

Abstract — In this paper, we investigate the integration of heterogeneous network monitoring data. Specifically, we will synchronize and integrate flow-level records, exemplified by Cisco NetFlow,...

Stream combination: Adaptive IO scheduling for streaming servers (2006)

Bin Liu, Raju Rangaswami

Cycle-based IO schedulers use statically configured timecycle durations. As a result, they are unable to avoid the formation of virtual bottlenecks. We term a bottleneck as virtual when it occurs...

Stream combination: Adaptive IO scheduling for streaming servers (2006)

Bin Liu, Raju Rangaswami

Cycle-based IO schedulers use statically configured timecycle durations. As a result, they are unable to avoid the formation of virtual bottlenecks. We term a bottleneck as virtual when it occurs...

A tcam-based distributed parallel ip lookup scheme and performance analysis (2006)

Kai Zheng, Chengchen Hu, Hongbin Lu, Bin Liu

Abstract-- Using Ternary Content Addressable Memory (TCAM) for high speed IP address lookup has been gaining popularity due to its deterministic high performance. However, restricted by the slow...

Channel-optimized quantizers for decentralized detection in sensor networks (2006)

Bin Liu, Biao Chen

Motivated by the delay and resource constraints omnipresent in most wireless sensor network applications, we design channel-optimized scalar quantizers for a canonical decentralized detection system....

Razumikhin-type theorems on exponential stability of impulsive delay systems (2006)

Liu, Bin, Liu, Xinzhi, Teo, Kok Lay, Wang, Qing

This paper studies the exponential stability of impulsive delay systems. By employing the Razumikhin technique and Lyapunov functions, several exponential stability criteria are established for both...

Online algorithm for application layer anycast (2006)

Yu, Shui, Li, Zhongwen, Liu, Bin

Application layer anycast possesses the property of flexibility, however, all the proposed application layer anycast routing algorithms are based on probing so far. One disadvantage of probing...

Test of the Stokes-Einstein relation in a two-dimensional Yukawa liquid (2005)

Liu, Bin, Goree, J.

The Stokes-Einstein relation, relating the diffusion and viscosity coefficients D and eta, is tested in two dimensions. An equilibrium molecular-dynamics simulation was used with a Yukawa pair...

Pigs in sequence space: A 0.66X coverage pig genome survey based on shotgun sequencing (2005)

Wernersson, Rasmus, Schierup, Mikkel H, Jørgensen, Frank G, Gorodkin, Jan, Panitz, Frank, Stærfeldt, Hans-Henrik, ...

Abstract Background Comparative whole genome analysis of Mammalia can benefit from the addition of more species. The pig is an obvious choice due to its economic and medical importance as well as its...

Superconductivity in Na$_{x}$CoO$_{2}\cdot y$H$_{2}$O driven by the kinetic energy (2005)

Liu, Bin, Liang, Ying, Feng, Shiping

Within the charge-spin separation fermion-spin theory, the mechanism of superconductivity in Na$_{x}$CoO$_{2}\cdot y$H$_{2}$O is studied. It is shown that dressed fermions interact occurring directly...

The Genomes of Oryza sativa: A History of Duplications (2005)

Jun Yu, Jun Wang, Wei Lin, Songgang Li, Heng Li, Jun Zhou, ...

Comparative genome sequencing of indica and japonica rice reveals that duplication of genes and genomic regions has played a major part in the evolution of grass genomes.

The Genomes of Oryza sativa: A History of Duplications (2005)

Jun Yu, Jun Wang, Wei Lin, Songgang Li, Heng Li, Jun Zhou, ...

We report improved whole-genome shotgun sequences for the genomes of indica and japonica rice, both with multimegabase contiguity, or almost 1,000-fold improvement over the drafts of 2002. Tested...

Shear viscosity of two-dimensional Yukawa systems in liquid state (2005)

Liu, Bin, Goree, J.

The shear viscosity of a two-dimensional (2D) liquid was calculated using equilibrium molecular dynamics simulations with a Yukawa potential. The shear viscosity has a minimum, at a Coulomb coupling...

Multi-dimensional queries in distributed systems / (2005)

Liu, Bin.

Thesis (M.Phil.)--Hong Kong University of Science and Technology, 2005.

Multi-dimensional queries in distributed systems / (2005)

Liu, Bin.

Thesis (M.Phil.)--Hong Kong University of Science and Technology, 2005.

The Synthesis and Herbicidal Activity of 1-Alkyl-3-(α-hydroxysubstituted benzylidene)pyrrolidine-2,4-diones (2005)

You-Quan Zhu, Chang-Sheng Yao, Xiao-Mao Zou, Fang-Zhong Hu, Bin Liu, Yong-Hong Li, ...

In the search for better herbicides a series of 1-alkyl-3-(α-hydroxy-(un)substituted benzylidene)pyrrolidine-2,4-diones were prepared and their structure-activity relationships studied. All...

Advisor (2005)

Bin Liu, Prof Murali Mani

Materialized integration views constructed by integrating data from mul-tiple distributed data sources help to achieve better access, reliable perfor-mance, and high availability for a wide range of...

Revisiting pipelined parallelism in multi-join query processing (2005)

Bin Liu, Elke A. Rundensteiner

Multi-join queries are the core of any integration service that integrates data from multiple distributed data sources. Due to the large number of data sources and possibly high volumes of data, the...

Revisiting the Role of Pipelined Parallelism in Multi-Join Query Processing (2005)

Bin Liu, Elke A. Rundensteiner, Bin Liu, Elke A. Rundensteiner

Multi-join queries are the core of any integration service that integrates data from multiple distributed data sources. Due to the large number of data sources and possibly high volumes of data, the...

Adapting State-Intensive Non-Blocking Queries over Distributed Environments (2005)

Bin Liu, Elke A. Rundensteiner, Bin Liu, Elke A. Rundensteiner

Main memory is a critical resource in push-based non-blocking query processing, especially for queries with stateful operators. Works in the literature apply partitioned parallel processing to...

Monitoring Large Flows in Network (2005)

Jing Li, Jing Li Chengchen, Bin Liu

In order to provide high quality network management, traffic scheduling and network security, we need the per flow traffic information. However, in a highspeed net link, the flows number is so large...

A Trace Study for Characteristics of Packet Arrivals (2005)

Zhen Liu, Zhen Liu Chengchen, Kai Zheng, Shanzhen Chen, Bin Liu

this paper, we present an analysis of four traces collected by NLANR, uncovering the characteristics of their packet arrival processes. Our contributions are two-fold. First, the analysis results...

Revisiting Pipelined Parallelism in Multi-Join Query (2005)

Processing Bin Liu, Bin Liu, Elke A. Rundensteiner

Multi-join queries are the core of any integration service that integrates data from multiple distributed data sources. Due to the large number of data sources and possibly high volumes of data, the...

A live multimedia stream querying system (2005)

Bin Liu

Querying live media streams captured by various sensors is becoming a challenging problem, due to the data heterogeneity and the lack of a unifying data model capable of accessing various multimedia...

MedSMan: a streaming data management system over live multimedia (2005)

Bin Liu

Querying live media streams is a challenging problem that is becoming an essential requirement in a growing number of applications. Research in multimedia information systems has addressed and made...

TCAM-based Distributed Parallel Packet Classification Algorithm with Range Matching Solution (2005)

Kai Zheng, Hao Che, Zhijun Wang, Bin Liu

Abstract--Packet Classification (PC) has been a critical data path function for many emerging networking applications. An interesting approach is the use of TCAM to achieve deterministic, high speed...

MediaBroker: a pervasive computing infrastructure for adaptive transformation and sharing of stream data (2005)

Umakishore Ramachandran, Martin Modahl, Ilya Bagrak, Matthew Wolenetz, David Lillethun, Bin Liu, ...

MediaBroker is a distributed framework designed to support pervasive computing applications. Key contributions of MediaBroker are efficient and scalable data transport, data stream registration and...

Type-based decentralized detection in wireless sensor networks (2005)

Bin Liu, Biao Chen

Existing channel aware signal processing design for decentralized detection in wireless sensor networks typically assumes the clairvoyant case, i.e., global channel state information (CSI) is known...

Type-based decentralized detection in wireless sensor networks (2005)

Bin Liu, Biao Chen

Existing channel aware signal processing design for decentralized detection in wireless sensor networks typically assumes the clairvoyant case, i.e., global channel state information (CSI) is known...

Multi-dimensional queries in distributed systems (2005)

Liu, Bin

Thesis (M.Phil.)--Hong Kong University of Science and Technology, 2005

ChickVD: a sequence variation database for the chicken genome (2005)

Wang, Jing, He, Ximiao, Ruan, Jue, Dai, Mingtao, Chen, Jie, Zhang, Yong, ...

Working in parallel with the efforts to sequence the chicken (Gallus gallus) genome, the Beijing Genomics Institute led an international team of scientists from China, USA, UK, Sweden, The...

Crosstalk and Congestion Driven Layer Assignment Algorithm (2005)

LIU, Bin, CAI, Yici, ZHOU, Qiang, HONG, Xianlong

In VDSM era, crosstalk is becoming a more and more vital factor in high performance VLSI designs, making noise mitigation in early design stages necessary. In this paper, we propose an effective...

Razumikhin-type theorems on exponential stability of impulsive delay systems (2005)

Liu, Bin, Liu, Xinzhi, Teo, Kok Lay, Wang, Qing

This paper studies the exponential stability of impulsive delay systems. By employing the Razumikhin technique and Lyapunov functions, several exponential stability criteria are established for both...

A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms (2004)

Liu, Bin, Wang, Jun, Zhang, Yong, Yang, Xu, Zhang, Zengjin, ...

We describe a genetic variation map for the chicken genome containing 2.8 million single-nucleotide polymorphisms (SNPs). This map is based on a comparison of the sequences of three domestic chicken...

Kinetic energy driven superconductivity in the electron doped cobaltate Na$_{x}$CoO$_{2}\cdot y$H$_{2}$O (2004)

Liu, Bin, Liang, Ying, Feng, Shiping, Chen, Wei Yeu

Within the charge-spin separation fermion-spin theory, we have shown that the mechanism of superconductivity in the electron doped cobaltate Na$_{x}$CoO$_{2}\cdot y$H$_{2}$O is ascribed to its...

Querying about the past, the present, and the fufure in spatio-temporal databases (2004)

Sun, Jimeng, Papadias, Dimitris, Tao, Yufei, Liu, Bin

Moving objects (e.g., vehicles in road networks) continuously generate large amounts of spatio-temporal information in the form of data streams. Efficient management of such streams is a challenging...

車両衝突を受ける橋梁用鋼製防護柵の材料ひずみ速度効果と性能照査に関する研究 (2004)

伊藤, 義人, ITOH, Yoshito, 劉, 斌, LIU, Bin, 宇佐見, 康一, USAMI, Koichi, ...

平成11年に制定された防護柵の設置基準では性能照査設計法が導入され、性能照査には原則として実車衝突実験が規定されている。実車衝突実験は膨...

FPC防護柵の性能照査型設計に関する研究 (2004)

劉, 斌, LIU, Bin, 伊藤, 義人, ITOH, Yoshito

A new type of guard fence named Flexible Precast Concrete (FPC) guard fence has been developed. In this study, FEM models are established for vehicles and FPC guard fences to simulate impact...

Multi-dimensional reconstruction of seismic data / (2004)

Liu, Bin.

A thesis submitted to the Faculty of Graduate Studies and Research in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Geophysics, Dept. of Physics, University of...

Multiversion-based View Maintenance over Distributed Data Sources (2004)

Songting Chen, Bin Liu, Elke A. Rundensteiner

Materialized views can be maintained by submitting maintenance queries to the data sources. However, the query results may be erroneous due to concurrent source updates. State-of-the-art maintenance...

Multiversion-based View Maintenance over Distributed Data Sources (2004)

Songting Chen, Bin Liu, Elke A. Rundensteiner

Materialized views can be maintained by submitting maintenance queries to the data sources. However, the query results may be erroneous due to concurrent source updates. State-of-the-art maintenance...

Prediction and indexing of moving objects with unknown motion patterns (2004)

Yufei Tao, Christos Faloutsos, Dimitris Papadias, Bin Liu

Existing methods for prediction in spatio-temporal databases assume that objects move according to linear functions. This severely limits their applicability, since in practice movement is more...

Prediction and indexing of moving objects with unknown motion patterns (2004)

Yufei Tao, Christos Faloutsos, Dimitris Papadias, Bin Liu

Existing methods for prediction in spatio-temporal databases assume that objects move according to linear functions. This severely limits their applicability, since in practice movement is more...

Querying about the Past, the Present and the Future in Spatio-Temporal Databases (2004)

Jimeng Sun, Dimitris Papadias, Yufei Tao, Bin Liu

Moving objects (e.g., vehicles in road networks) continuously generate large amounts of spatio-temporal information in the form of data streams. Efficient management of such streams is a challenging...

A novel replicating circular DNAzyme (2004)

Chen, Fei, Wang, Ruijian, Li, Zhe, Liu, Bin, Wang, Xiaoping, Sun, Yanhong, ...

10–23 DNAzyme has the potential to suppress gene expressions through sequence‐specific mRNA cleavage. However, the dependence on exogenous delivery limits its applications. The objective of...

Numerical Collision Analysis of Concrete Guard Fences for Performance-Based Design (2003)

服部, 良平, Hattori, Ryouhei, 伊藤, 義人, Itoh, Yoshito, Kusama, Ryuichi, 劉, 斌, ...

The performance-based design concept has been implemented in the code for guard fence designs in Japan, in which full-scale collision experiment for checking the performances of guard fences are...

Charge transport of electron doped Mott insulators on a triangular lattice (2003)

Liu, Bin, Liang, Ying, Feng, Shiping, Chen, Wei Yeu

The charge transport of electron doped Mott insulators on a triangular lattice is investigated within the t-J model based on the partial charge-spin separation fermion-spin theory. The conductivity...

Numerical Analysis on Vehicle Collision to Flexible Precast Concrete Guard Fence (2003)

劉, 斌, Liu, Bin, 伊藤, 義人, Itoh, Yoshito

A new type of guard fence named Flexible Precast Concrete (FPC) guard fence has been developed in Japan. In this study, FEM models are established for truck and the FPC guard fence to simulate impact...

Restructuring View Maintenance Plans for Large Update Batches (2003)

Bin Liu, Elke A. Rundensteiner, David Finkel

Materialized views defined over distributed data sources are a well recognized technology in data integration, e-business and semantic web. Due to the constantly increasing size of the information...

A Framework for Optimizing View Maintenance Plans over Distributed Data Sources (2003)

Bin Liu, Bin Liu, Elke A. Rundensteiner, Elke A. Rundensteiner, David Finkel, David Finkel

Materialized views defined over distributed data sources are a well recognized technology for data integration, e-business, and data warehousing. Many algorithms have been proposed to date for...

Robust dissipativity for uncertain impulsive dynamical systems (2003)

Bin Liu, Xinzhi Liu, Xiaoxin Liao

We discuss the robust dissipativity with respect to the quadratic supply rate for uncertain impulsive dynamical systems. By employing the Hamilton-Jacobi inequality approach, some sufficient...

Two-Body Dirac Equations for Nucleon-Nucleon Scattering (2002)

Liu, Bin, Crater, Horace

We investigate the nucleon-nucleon interaction by using the meson exchange model and the two body Dirac equations of constraint dynamics. This approach to the two body problem has been successfully...

A fluid model with data message discarding (2002)

Liu, Bin, Alfa, Attahiru Sule

In this paper, we study a fluid model with partial message discarding and early message discarding, in which a finite buffer receives data (or information) from N independent on/off sources. All data...

Expression of p53, inducible nitric oxide synthase and vascular endothelial growth factor in gastric precancerous and cancerous lesions: correlation with clinical features (2002)

Feng, Chang, Wang, Li, Jiao, Lian, Liu, Bin, Zheng, Shu, Xie, Xin

Abstract Background The growth and metastasis of tumors depend on the development of an adequate blood supply via angiogenesis. Recent studies indicate that the inducible nitric oxide synthase...

Syntheses of TRH analogs and the natural product (+)-nemorensic acid / (2002)

Liu, Bin.

Thesis (Ph. D.)--Washington University, 2002. Dept. of Chemistry.

Optimization Strategies for Data Warehouse Maintenance in Distributed Environments (2002)

Bin Liu

Data warehousing is becoming an increasingly important technology for information integration and data analysis. Given the dynamic nature of modern distributed environments, both source data updates...

TREC-11 experiments at CAS-ICT: Filtering and web (2002)

Hongbo Xu, Zhifeng Yang, Bin Wang, Bin Liu, Jun Cheng, Yue Liu, ...

CAS-ICT took part in the TREC conference for the second time this year and we undertook two tracks of TREC-11. For filtering track, we have submitted results of all three subtasks. In adaptive...

Batch Data Warehouse Maintenance in Dynamic Environments (2002)

Bin Liu, Songting Chen, Elke A. Rundensteiner

Data warehouse view maintenance is an important issue due to the growing use of warehouse technology for information integration and data analysis. Given the dynamic nature of modern distributed...

A Transactional Approach to Parallel Data Warehouse Maintenance (2002)

Bin Liu, Songting Chen, Elke A. Rundensteiner

Data Warehousing is becoming an increasingly important technology for information integration and data analysis. Given the dynamic nature of modern distributed environments, both source data and...

In Vivo Molecular Chemotherapy and Noninvasive Imaging With an Infectivity-Enhanced Adenovirus (2002)

Hemminki, Akseli, Zinn, Kurt R., Liu, Bin, Chaudhuri, Tandra R., Desmond, Renee A., Rogers, Buck E., ...

Background: Adenovirus-based gene therapy is a promising approach to treat advanced cancers that are resistant to other treatments. However, many primary cells lack the requisite coxsackie-adenovirus...

An abstract existence result and its applications (2001)

Sui Sun Cheng, Jian-She Ju, Bin Liu

By means of Borsuk's theorem and continuation through an admissible homotopy, we establish an existence theorem for operator equation with homogeneous nonlinearity. We illustrate our theorem by...

Doppler Ultrasound Signal Denoising Based On Wavelet Frames (2001)

Yu Zhang, Yuanyuan Wang, Weiqi Wang, Bin Liu

A novel approach was proposed to denoise the Doppler ultrasound signal. In this method, wavelet coefficients of the Doppler signal at multiple scales were first obtained using the discrete wavelet...

Characterization of anti-sulfatide autoantibodies in demyelinating diseases (2000)

Liu, Bin

Multiple sclerosis (MS) is the most common autoimmune disease of the central nerve system and Guillain Barré Syndrome (GBS) is an inflammatory neuropathy involving the peripheral nerves....

Three-dimensional photonic devices and circuits /--by Bin Liu. (2000)

Liu, Bin.

Thesis (Ph. D.)--University of California, Santa Barbara, 2000.

Kirchhoff migration in compressed spaces / (1999)

Liu, Bin.

Submitted to the Faculty of Graduate Studies and Research in partial fulfilment of the requirements for the degree of Master of Science, Department of Physics.

The steady-state microwave heating of slabs (1997)

Liu, Bin.

Typescript. Bibliographical references: leaf 79-82.

12(S)-HETE Enhancement of Prostate Tumor Cell Invasion: Selective Role of PKC (1994)

Liu, Bin, Maher, Robert J., Hannun, Yusuf A., Porter, Arthur T., Honn, Kenneth V.

Background: Prostate carcinoma has become the second most fatal cancer in American men. In Dunning R3327 rat prostate adenocarcinoma cells, elevated invasiveness positively correlates with metastatic...

Inhibition of Stat1-mediated gene activation by PIAS1

Liu, Bin, Liao, Jiayu, Rao, Xiaoping, Kushner, Steven A., Chung, Chan D., Chang, David D., ...

STAT (signal transducer and activator of transcription) proteins are latent cytoplasmic transcription factors that become activated by tyrosine phosphorylation in response to cytokine stimulation....

A transcriptional corepressor of Stat1 with an essential LXXLL signature motif

Liu, Bin, Gross, Mitchell, Ten Hoeve, Johanna, Shuai, Ke

Interferon (IFN) treatment induces tyrosine phosphorylation and nuclear translocation of Stat1 (signal transducer and activator of transcription) to activate or repress transcription. We report here...

Identification of a Novel Dexamethasone-Sensitive RNA-Destabilizing Region on Rat Monocyte Chemoattractant Protein 1 mRNA

Poon, Michael, Liu, Bin, Taubman, Mark B.

Glucocorticoids are potent anti-inflammatory agents widely used in the treatment of human disease. We have previously shown that the inflammatory cytokine monocyte chemoattractant protein 1 (MCP-1)...

A novel replicating circular DNAzyme

Chen, Fei, Wang, Ruijian, Li, Zhe, Liu, Bin, Wang, Xiaoping, Sun, Yanhong, ...

10–23 DNAzyme has the potential to suppress gene expressions through sequence-specific mRNA cleavage. However, the dependence on exogenous delivery limits its applications. The objective of this...

ChickVD: a sequence variation database for the chicken genome

Wang, Jing, He, Ximiao, Ruan, Jue, Dai, Mingtao, Chen, Jie, Zhang, Yong, ...

Working in parallel with the efforts to sequence the chicken (Gallus gallus) genome, the Beijing Genomics Institute led an international team of scientists from China, USA, UK, Sweden, The...

Structural and Genetic Characterization of Enterohemorrhagic Escherichia coli O145 O Antigen and Development of an O145 Serogroup-Specific PCR Assay†

Feng, Lu, Senchenkova, Sof'ya N., Tao, Jiang, Shashkov, Alexander S., Liu, Bin, Shevelev, Sergei D., ...

Enterohemorrhagic Escherichia coli O145 strains are emerging as causes of hemorrhagic colitis and hemolytic uremic syndrome. In this study, we present the structure of the E. coli O145 O antigen and...

Negative Regulation of NF-κB Signaling by PIAS1†

Liu, Bin, Yang, Randy, Wong, Kelly A., Getman, Crescent, Stein, Natalie, Teitell, Michael A., ...

The NF-κB family of transcription factors is activated by a wide variety of signals to regulate a spectrum of cellular processes. The proper regulation of NF-κB activity is critical, since abnormal...

Methods for strand-specific DNA detection with cationic conjugated polymers suitable for incorporation into DNA chips and microarrays

Liu, Bin, Bazan, Guillermo C.

A strand-specific DNA sensory method is described based on surface-bound peptide nucleic acids and water-soluble cationic conjugated polymers. The main transduction mechanism operates by taking...

The Genomes of Oryza sativa: A History of Duplications

Yu, Jun, Wang, Jun, Lin, Wei, Li, Songgang, Li, Heng, Zhou, Jun, ...

We report improved whole-genome shotgun sequences for the genomes of indica and japonica rice, both with multimegabase contiguity, or almost 1,000-fold improvement over the drafts of 2002. Tested...

Implications of an antiparallel dimeric structure of nonphosphorylated STAT1 for the activation–inactivation cycle

Zhong, Minghao, Henriksen, Melissa A., Takeuchi, Kenji, Schaefer, Olaf, Liu, Bin, Hoeve, Johanna Ten, ...

IFN-γ treatment of cells leads to tyrosine phosphorylation of signal transducer and activator of transcription (STAT) 1 followed by dimerization through a reciprocal Src homology 2–phosphotyrosine...

Parkinson's disease and exposure to infectious agents and pesticides and the occurrence of brain injuries: role of neuroinflammation.

Liu, Bin, Gao, Hui-Ming, Hong, Jau-Shyong

Idiopathic Parkinson's disease (PD) is a devastating movement disorder characterized by selective degeneration of the nigrostriatal dopaminergic pathway. Neurodegeneration usually starts in the fifth...

Loss of Function of OsDCL1 Affects MicroRNA Accumulation and Causes Developmental Defects in Rice1[w]

Liu, Bin, Li, PingChuan, Li, Xin, Liu, ChunYan, Cao, ShouYun, Chu, ChengCai, ...

MicroRNAs (miRNAs) and small interfering RNAs (siRNAs) are two types of noncoding RNAs involved in developmental regulation, genome maintenance, and defense in eukaryotes. The activity of Dicer or...

The Transcribed 165-bp CentO Satellite Is the Major Functional Centromeric Element in the Wild Rice Species Oryza punctata

Zhang, Wenli, Yi, Chuandeng, Bao, Weidong, Liu, Bin, Cui, Jiajun, Yu, Hengxiu, ...

Centromeres are required for faithful segregation of chromosomes in cell division. It is not clear what kind of sequences act as functional centromeres and how centromere sequences are organized in...

A probiotic treatment containing Lactobacillus, Bifidobacterium and Enterococcus improves IBS symptoms in an open label trial

Fan, Yu-jing, Chen, Shu-jie, Yu, Ying-cong, Si, Jian-min, Liu, Bin

Objective: To evaluate the efficacy and safety of live combined Bifidobacterium, Lactobacillus and Enterococcus capsules in treatment of irritable bowel syndrome. Methods: Eighty-five patients [male...

Inhibition of Stat1-mediated gene activation by PIAS1

Liu, Bin, Liao, Jiayu, Rao, Xiaoping, Kushner, Steven A., Chung, Chan D., Chang, David D., ...

STAT (signal transducer and activator of transcription) proteins are latent cytoplasmic transcription factors that become activated by tyrosine phosphorylation in response to cytokine stimulation....

A transcriptional corepressor of Stat1 with an essential LXXLL signature motif

Liu, Bin, Gross, Mitchell, Ten Hoeve, Johanna, Shuai, Ke

Interferon (IFN) treatment induces tyrosine phosphorylation and nuclear translocation of Stat1 (signal transducer and activator of transcription) to activate or repress transcription. We report here...

Identification of a Novel Dexamethasone-Sensitive RNA-Destabilizing Region on Rat Monocyte Chemoattractant Protein 1 mRNA

Poon, Michael, Liu, Bin, Taubman, Mark B.

Glucocorticoids are potent anti-inflammatory agents widely used in the treatment of human disease. We have previously shown that the inflammatory cytokine monocyte chemoattractant protein 1 (MCP-1)...

A novel replicating circular DNAzyme

Chen, Fei, Wang, Ruijian, Li, Zhe, Liu, Bin, Wang, Xiaoping, Sun, Yanhong, ...

10–23 DNAzyme has the potential to suppress gene expressions through sequence-specific mRNA cleavage. However, the dependence on exogenous delivery limits its applications. The objective of this...

ChickVD: a sequence variation database for the chicken genome

Wang, Jing, He, Ximiao, Ruan, Jue, Dai, Mingtao, Chen, Jie, Zhang, Yong, ...

Working in parallel with the efforts to sequence the chicken (Gallus gallus) genome, the Beijing Genomics Institute led an international team of scientists from China, USA, UK, Sweden, The...

Structural and Genetic Characterization of Enterohemorrhagic Escherichia coli O145 O Antigen and Development of an O145 Serogroup-Specific PCR Assay†

Feng, Lu, Senchenkova, Sof'ya N., Tao, Jiang, Shashkov, Alexander S., Liu, Bin, Shevelev, Sergei D., ...

Enterohemorrhagic Escherichia coli O145 strains are emerging as causes of hemorrhagic colitis and hemolytic uremic syndrome. In this study, we present the structure of the E. coli O145 O antigen and...

Negative Regulation of NF-κB Signaling by PIAS1†

Liu, Bin, Yang, Randy, Wong, Kelly A., Getman, Crescent, Stein, Natalie, Teitell, Michael A., ...

The NF-κB family of transcription factors is activated by a wide variety of signals to regulate a spectrum of cellular processes. The proper regulation of NF-κB activity is critical, since abnormal...

Methods for strand-specific DNA detection with cationic conjugated polymers suitable for incorporation into DNA chips and microarrays

Liu, Bin, Bazan, Guillermo C.

A strand-specific DNA sensory method is described based on surface-bound peptide nucleic acids and water-soluble cationic conjugated polymers. The main transduction mechanism operates by taking...

The Genomes of Oryza sativa: A History of Duplications

Yu, Jun, Wang, Jun, Lin, Wei, Li, Songgang, Li, Heng, Zhou, Jun, ...

We report improved whole-genome shotgun sequences for the genomes of indica and japonica rice, both with multimegabase contiguity, or almost 1,000-fold improvement over the drafts of 2002. Tested...

Implications of an antiparallel dimeric structure of nonphosphorylated STAT1 for the activation–inactivation cycle

Zhong, Minghao, Henriksen, Melissa A., Takeuchi, Kenji, Schaefer, Olaf, Liu, Bin, Hoeve, Johanna Ten, ...

IFN-γ treatment of cells leads to tyrosine phosphorylation of signal transducer and activator of transcription (STAT) 1 followed by dimerization through a reciprocal Src homology 2–phosphotyrosine...

Loss of Function of OsDCL1 Affects MicroRNA Accumulation and Causes Developmental Defects in Rice1[w]

Liu, Bin, Li, PingChuan, Li, Xin, Liu, ChunYan, Cao, ShouYun, Chu, ChengCai, ...

MicroRNAs (miRNAs) and small interfering RNAs (siRNAs) are two types of noncoding RNAs involved in developmental regulation, genome maintenance, and defense in eukaryotes. The activity of Dicer or...

The Transcribed 165-bp CentO Satellite Is the Major Functional Centromeric Element in the Wild Rice Species Oryza punctata

Zhang, Wenli, Yi, Chuandeng, Bao, Weidong, Liu, Bin, Cui, Jiajun, Yu, Hengxiu, ...

Centromeres are required for faithful segregation of chromosomes in cell division. It is not clear what kind of sequences act as functional centromeres and how centromere sequences are organized in...

Parkinson's disease and exposure to infectious agents and pesticides and the occurrence of brain injuries: role of neuroinflammation.

Liu, Bin, Gao, Hui-Ming, Hong, Jau-Shyong

Idiopathic Parkinson's disease (PD) is a devastating movement disorder characterized by selective degeneration of the nigrostriatal dopaminergic pathway. Neurodegeneration usually starts in the fifth...

A probiotic treatment containing Lactobacillus, Bifidobacterium and Enterococcus improves IBS symptoms in an open label trial

Fan, Yu-jing, Chen, Shu-jie, Yu, Ying-cong, Si, Jian-min, Liu, Bin

Objective: To evaluate the efficacy and safety of live combined Bifidobacterium, Lactobacillus and Enterococcus capsules in treatment of irritable bowel syndrome. Methods: Eighty-five patients [male...

Michigan Molecular Interactions (MiMI): putting the jigsaw puzzle together

Jayapandian, Magesh, Chapman, Adriane, Tarcea, V. Glenn, Yu, Cong, Elkiss, Aaron, Ianni, Angela, ...

Protein interaction data exists in a number of repositories. Each repository has its own data format, molecule identifier and supplementary information. Michigan Molecular Interactions (MiMI) assists...

Regional Variation in the Density of Essential Genes in Mice

Hentges, Kathryn E, Pollock, David D, Liu, Bin, Justice, Monica J

In most species, and particularly in vertebrates, the percentage of genes absolutely required for survival, the essential genes, has not been estimated. To obtain this estimation, we used the mouse...

Porcine transcriptome analysis based on 97 non-normalized cDNA libraries and assembly of 1,021,891 expressed sequence tags

Gorodkin, Jan, Cirera, Susanna, Hedegaard, Jakob, Gilchrist, Michael J, Panitz, Frank, Jørgensen, Claus, ...

A resource consisting of one million porcine ESTs is described, providing an essential resource for annotation, comparative genomics, assembly of the pig genome sequence, and further porcine...

DNA Microarray-Based Identification of Serogroups and Virulence Gene Patterns of Escherichia coli Isolates Associated with Porcine Postweaning Diarrhea and Edema Disease▿ †

Han, Weiqing, Liu, Bin, Cao, Boyang, Beutin, Lothar, Krüger, Ulrike, Liu, Hongbo, ...

Escherichia coli strains causing postweaning diarrhea (PWD) and edema disease (ED) in pigs are limited to a number of serogroups, with O8, O45, O138, O139, O141, O147, O149, and O157 being the most...

Retroviral insertions in the VISION database identify molecular pathways in mouse lymphoid leukemia and lymphoma

Weiser, Keith C., Liu, Bin, Hansen, Gwenn M., Skapura, Darlene, Hentges, Kathryn E., Yarlagadda, Sujatha, ...

AKXD recombinant inbred (RI) strains develop a variety of leukemias and lymphomas due to somatically acquired insertions of retroviral DNA into the genome of hematopoetic cells that can mutate...

Control of specificity and magnitude of NF-κB and STAT1-mediated gene activation through PIASy and PIAS1 cooperation

Tahk, Samuel, Liu, Bin, Chernishof, Vasili, Wong, Kelly A., Wu, Hong, Shuai, Ke

NF-κB and STATs regulate multiple cellular processes through the transcriptional activation of genes with diversified functions. Although the molecular mechanisms that can turn on/off the overall...

Small RNA-Directed Epigenetic Natural Variation in Arabidopsis thaliana

Zhai, Jixian, Liu, Jun, Liu, Bin, Li, Pingchuan, Meyers, Blake C., Chen, Xuemei, ...

Progress in epigenetics has revealed mechanisms that can heritably regulate gene function independent of genetic alterations. Nevertheless, little is known about the role of epigenetics in evolution....

Oryza sativa Dicer-like4 Reveals a Key Role for Small Interfering RNA Silencing in Plant Development[W][OA]

Liu, Bin, Chen, Zhiyu, Song, Xianwei, Liu, Chunyan, Cui, Xia, Zhao, Xianfeng, ...

MicroRNAs and small interfering RNAs (siRNAs) are two classes of small regulatory RNAs derived from different types of precursors and processed by distinct Dicer or Dicer-like (DCL) proteins. During...

Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)

Lu, Cheng, Jeong, Dong-Hoon, Kulkarni, Karthik, Pillay, Manoj, Nobuta, Kan, German, Rana, ...

Small RNAs (21–24 nt) are involved in gene regulation through translation inhibition, mRNA cleavage, or directing chromatin modifications. In rice, currently ≈240 microRNAs (miRNAs) have been...

Transient analysis of an M/G/1 retrial queue subject to disasters and server failures

Wang, Jinting, Liu, Bin, Li, Jianghua

An M/G/1 retrial queueing system with disasters and unreliable server is investigated in this paper. Primary customers arrive in the system according to a Poisson process, and they receive service...

A Genomic Islet Mediates Flagellar Phase Variation in Escherichia coli Strains Carrying the Flagellin-Specifying Locus flk▿ †

Feng, Lu, Liu, Bin, Liu, Yanqun, Ratiner, Yuli A., Hu, Bo, Li, Dan, ...

The occurrence of unilateral flagellar phase variation was previously demonstrated in Escherichia coli strains carrying the non-fliC flagellin-specifying locus flk. In this study, we investigated the...

Characterization of Two β-1,3-Glucosyltransferases from Escherichia coli Serotypes O56 and O152▿ †

Brockhausen, Inka, Hu, Bo, Liu, Bin, Lau, Kenneth, Szarek, Walter A., Wang, Lei, ...

The O antigens of outer membrane-bound lipopolysaccharides (LPS) in gram-negative bacteria are oligosaccharides consisting of repeating units with various structures and antigenicities. The O56 and...

"Tandem duplication-random loss" is not a real feature of oyster mitochondrial genomes

Ren, Jianfeng, Liu, Xiao, Zhang, Guofan, Liu, Bin, Guo, Ximing

Duplications and rearrangements of coding genes are major themes in the evolution of mitochondrial genomes, bearing important consequences in the function of mitochondria and the fitness of...

Development of 2-DOF haptic devices working with magnetorheological fluids

Liu, Bin

The thesis presents the design and development of a 2-DOF (degree of freedom) magnetorheological (MR) fluid based haptic joystick and studies its applications in virtual reality. MR fluids are...

Phosphorylation State of Tyrosine Hydroxylase in the Stalk-Median Eminence Is Decreased by Progesterone in Cycling Female Rats

Liu, Bin, Arbogast, Lydia A.

Progesterone has the capacity to suppress hypothalamic dopaminergic neuronal activity on proestrous afternoon and prolong or amplify the preovulatory prolactin surge in rats. In the present study, we...

A Germin-Like Protein Gene Family Functions as a Complex Quantitative Trait Locus Conferring Broad-Spectrum Disease Resistance in Rice1[W][OA]

Manosalva, Patricia M., Davidson, Rebecca M., Liu, Bin, Zhu, Xiaoyuan, Hulbert, Scot H., Leung, Hei, ...

Plant disease resistance governed by quantitative trait loci (QTL) is predicted to be effective against a broad spectrum of pathogens and long lasting. Use of these QTL to improve crop species,...

Microproteinuria for detecting calcineurin inhibitor-related nephrotoxicity after liver transplantation

Li, Jing, Liu, Bin, Yan, Lu-Nan, Wang, Lan-Lan, Lau, Wan Y, Li, Bo, ...

AIM: To investigate whether microproteinuria could be used as an early and sensitive indicator to detect calcineurin inhibitor (CNI)-related nephrotoxicity after liver transplantation.

Simvastatin Restores Down-Regulated GATA-6 Expression in Pulmonary Hypertensive Rats

Liu, Bin, Wang, Xiao-qin, Yu, Li, Zhou, Tong-fu, Wang, Xian-min, Liu, Han-min

Vascular smooth muscle cell proliferation has been known to be predominant in vascular remodeling of pulmonary hypertensive. The GATA family proteins, a group of zinc finger transcription factors,...

Development of 2-DOF haptic devices working with magnetorheological fluids

Liu, Bin

The thesis presents the design and development of a 2-DOF (degree of freedom) magnetorheological (MR) fluid based haptic joystick and studies its applications in virtual reality. MR fluids are...

Development of 2-DOF haptic devices working with magnetorheological fluids

Liu, Bin

The thesis presents the design and development of a 2-DOF (degree of freedom) magnetorheological (MR) fluid based haptic joystick and studies its applications in virtual reality. MR fluids are...

ONE IMPROVED AGENT GENETIC ALGORITHM â RING-LIKE AGENT GENETIC ALGORITHM FOR GLOBAL NUMERICAL OPTIMIZATION

BIN LIU, TEQI DUAN, YONGMING LI

In this paper, a novel genetic algorithm â dynamic ring-like agent genetic algorithm (RAGA) is proposed for solving global numerical optimization problem. The RAGA combines the ring-like agent...

Modulation of microglial pro-inflammatory and neurotoxic activity for the treatment of Parkinson’s disease

Liu, Bin

Parkinson’s disease (PD) is a debilitating movement disorder resulting from a progressive degeneration of the nigrostriatal dopaminergic pathway and depletion of neurotransmitter dopamine in the...