Biomed Central

BMC Medical Research Methodology (2009)

Biomed Central, Catherine A Meads, Clare F Davenport, Catherine A Meads, Clare F Davenport

Research article Quality assessment of diagnostic before-after studies: development of methodology in the context of a systematic review

BMC Medical Research Methodology (2009)

Biomed Central, Simon Rückinger, Rüdiger Von Kries, André Michael, Toschke Open Access, André Michael Toschke

Research article An illustration of and programs estimating attributable fractions in large scale surveys considering multiple risk factors

Virology Journal (2009)

Biomed Central, Kwamena W Sagoe, Magda Dwidar, Theophilus K Adiku, Max Q Arens

HIV-1 CRF 02 AG polymerase genes in Southern Ghana are mosaics of different 02 AG strains and the protease gene cannot infer subtypes

Drosophila (2009)

Bmc Genomics, Biomed Central, Qianqian Zhu, Marc S Halfon

Research article Complex organizational structure of the genome revealed by genome-wide analysis of single and alternative promoters in

of nAChR: A (2009)

Biomed Central, Adak Nasiripourdori, Bijan Ranjbar, Hossein Naderi-manesh

Binding of long-chain α-neurotoxin would stabilize the resting state

BMC Medical Research Methodology (2009)

Biomed Central, Santiago G Moreno, Alex J Sutton, Ae Ades, Tom D Stanley, Keith R Abrams, ...

Research article Assessment of regression-based methods to adjust for publication bias through a comprehensive simulation study

BMC Medical Informatics and Decision Making (2009)

Biomed Central, Amir-homayoon Najmi, Howard Burkom

Research article Recursive least squares background prediction of univariate syndromic surveillance data

BMC Medical Research Methodology (2009)

Biomed Central, Lasse Theis Krogsbøll, Asbjørn Hróbjartsson, Peter C Gøtzsche

Research article Spontaneous improvement in randomised clinical trials: meta-analysis of three-armed trials comparing no treatment, placebo and active intervention

BMC Medical Informatics and Decision Making (2009)

Biomed Central, Yuan Cao, Na Wang, Xiaomin Ying, Ailing Li, Hengsha Wang, ...

Software BioSunMS: a plug-in-based software for the management of patients information and the analysis of peptide profiles from mass spectrometry

Journal of Biomedical Discovery and Collaboration (2009)

Biomed Central, Barbara Mirel

Supporting cognition in systems biology analysis: findings on users' processes and design implications

BMC Medical Informatics and Decision Making (2009)

Biomed Central, Berit Kriström, Jovanna Dahlgren, Aimon Niklasson, Andreas Fm Nierop, Kerstin Albertsson-wikl

Research article The first-year growth response to growth hormone treatment predicts the long-term prepubertal growth response in children

BMC Evolutionary Biology (2008)

Roberto Guidetti, Laura Baraldi, Caterina Calzolai, Lorenza Pini, Paola Veronesi, Aurora Pederzoli, ...

Fantastic animals as an experimental model to teach animal adaptation

BMC Medical Research Methodology (2008)

Biomed Central, A Metin Gülmezoglu, Lale Say, Ana P Betrán, Jose Villar, Gilda Piaggio

Research article WHO systematic review of maternal mortality and morbidity: methodological issues and challenges

prostate cancer (2008)

Bmc Bioinformatics, Michael Wagner, N Naik, Alex Pothen, Srinivas Kasukurti, Raghu Ram Devineni, ...

Computational protein biomarker prediction: a case study for

BMC Bioinformatics Database (2008)

Brad T Sherman, Da Wei Huang, Qina Tan, Yongjian Guo, Stephan Bour, David Liu, ...

heterogeneous gene annotation resources to facilitate high-throughput gene functional analysis

BMC Cell Biology (2008)

Raphaël Marée, Pierre Geurts, Louis Wehenkel, Biomed Central

Random subwindows and extremely randomized trees for image classification in cell biology

BMC Bioinformatics Proceedings Automating Genomic Data Mining via a Sequence-based Matrix Format and Associative Rule Set (2008)

Jonathan D Wren, David Johnson, Le Gruenwald, Biomed Central

Data mininggenomicsformat specificationsassociation rule discovery There is an enormous amount of information encoded in each genome – enough to create living, responsive and adaptive organisms....

image (2008)

A Ravishankar Rao, Guillermo A Cecchi, Marcelo Magnasco, Biomed Central

High performance computing environment for multidimensional

BMC Medical Informatics and Decision Making (2008)

Mikael Nyström, Magnus Merkel, Lars Ahrenberg, Pierre Zweigenbaum, Håkan Petersson, Hans Åhlfeldt, ...

Research article Creating a medical English-Swedish dictionary using interactive word alignment

BMC Musculoskeletal Disorders (2008)

Martin Descarreaux, Danik Lafond, Renaud Jeffrey-gauthier, Hugo Centomo, Vincent Cantin, Biomed Central

Research article Changes in the flexion relaxation response induced by lumbar muscle fatigue

BMC Medical Informatics and Decision Making (2008)

Biomed Central, Jeffrey S Barrett, John T Mondick, Mahesh Narayan

Research article Integration of modeling and simulation into hospital-based decision support systems guiding pediatric pharmacotherapy

Open Access (2008)

Bmc Bioinformatics, Madhavi Ganapathiraju, N Balakrishnan, Raj Reddy, Biomed Central

Proceedings Transmembrane helix prediction using amino acid property features and latent semantic analysis

BMC Health Services Research Research article Comparative indicators for cancer network management in England: Availability, characteristics and presentation (2008)

Mark Mccarthy, Arturo Gonzalez-izquierdo, Chris Sherlaw-johnson, Artak Khachatryan, Michel P Coleman, Bernard Rachet, ...

Background: In 2000, the national cancer plan for England created 34 cancer networks, new organisational structures to coordinate services across populations varying between a half and three million...

Assessing the health and development of ART-conceived young adults: A study of feasibility, parent recall, and acceptability (2008)

Jane Rw Fisher, Karin Hammarberg, Hw Gordon Baker, John C Mcbain, Biomed Central

© 2008 Fisher et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License

BMC Medical Informatics and Decision Making (2008)

Biomed Central, Yefeng Wang, Jon Patrick, Graeme Miller

Proceedings A computational linguistics motivated mapping of ICPC-2 PLUS to

BMC Psychiatry Research article A Japanese version of the Perceived Stress Scale: cross-cultural translation and equivalence assessment (2008)

Chizu Mimura, Peter Griffiths, Biomed Central

Background: This paper describes the development of a Japanese version of the Perceived Stress Scale (PSS), and examines the equivalence between the original and translated version. The PSS is one of...

© 2008 Pechmann et al; licensee BioMed Central Ltd Background (2008)

Sebastian Pechmann, Emmanuel D Levy, Gian G Tartaglia, Michele Vendruscolo, Biomed Central

Interactions between proteins are vital for essentially every process in a living cell. Physico-chemical complementarity, which can be considered as the driving force for molecular recognition, has...

BMC Medical Informatics and Decision Making (2008)

Kristen Reidel, Robyn Tamblyn, Vaishali Patel, Allen Huang, Biomed Central

Research article Pilot study of an interactive voice response system to improve medication refill compliance

BMC Medical Informatics and Decision Making (2008)

Biomed Central

Proceedings Experiences mapping a legacy interface terminology to SNOMED

© 2008 Chukualim et al; licensee BioMed Central Ltd Background (2008)

Bridget Chukualim, Nick Peters, Christiane Hertz Fowler, Matthew Berriman, Biomed Central, Bridget Chukualim

Trypanosoma brucei (T. brucei) is a single celled parasite, subspecies of which are causative agents of African sleeping sickness in humans and nagana in domestic animals. Sleeping sickness is...

Open Access (2008)

Bmc Bioinformatics, Biomed Central, Shengqi Wang

A novel representation of RNA secondary structure based on element-contact graphs

BMC Medical Informatics and Decision Making (2008)

Biomed Central, Grace Y Chung, Enrico Coiera

Research article Are decision trees a feasible knowledge representation to guide extraction of critical information from randomized controlled trial reports?

constraints or mispredictions? (2008)

Bmc Genomics, Albert Pallejà, Eoghan D Harrington, Peer Bork, Biomed Central

Large gene overlaps in prokaryotic genomes: result of functional

BMC Medical Genomics (2008)

Oi Lian Kon, Tai-tung Yip, Meng Fatt Ho, Weng Hoong Chan, Wai Keong Wong, Soo Yong Tan, ...

Research article The distinctive gastric fluid proteome in gastric cancer reveals a multi-biomarker diagnostic profile

This year's keynote speaker will be Professor Philip E. Bourne, from the Skaggs School of Pharmacy & Pharmaceutical Sciences, UCSD. Panel Session (2008)

Phillip Lord, Nigam Shah, Philip E. Bourne, Matt Cockerill, Biomed Central, Mike Bada, ...

The Bio-Ontologies Meeting has existed as a Special Interest Group meeting at ISMB for more than a decade, making it one of the longest running SIG meetings. The Bio-Ontologies SIG meeting has...

Journal of Biomedical Discovery and Collaboration (2008)

Biomed Central, Neil R Smalheiser, Wei Zhou

Software Anne O'Tate: A tool to support user-driven summarization, drill-down and browsing of PubMed search results

User experiences of evidence-based online resources for health professionals: User testing of The Cochrane Library (2008)

Biomed Central, Sarah E Rosenbaum, Claire Glenton, Jane Cracknell, Open Access, Jane Cracknell

© 2008 Rosenbaum et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License

BMC Medical Research Methodology (2008)

Biomed Central, Nanna Kurtze, Vegar Rangul, Bo-egil Hustvedt

Research article Reliability and validity of the international physical activity questionnaire in the Nord-Trøndelag health study (HUNT) population of men

BMC Medical Research Methodology (2008)

Biomed Central, Davide Mauri, Vasiliki Karampoiki, Jacopo Mauri, Konstantinos Kamposioras, Georgios Alexiou, ...

Research article Double–blind control of the data manager doesn't have any impact on data entry reliability and should be considered as an avoidable cost

BMC Medical Research Methodology (2008)

Biomed Central, Johanna C Dekkers, Ingrid Jm Hendriksen, Jos Wr Twisk, Willem Van Mechelen

Research article Accuracy of self-reported body weight, height and waist circumference in a Dutch overweight working population

BMC Bioinformatics (2008)

Biomed Central

Research article Determining significance of pairwise co-occurrences of events in bursty sequences

BMC Medical Research Methodology (2008)

Biomed Central, Lisa Kuramoto, Boris G Sobolev

Research article On reporting results from randomized controlled trials with recurrent events

BMC Bioinformatics (2008)

Biomed Central, Rolf Backofen

Software CPSP-tools – Exact and complete algorithms for high-throughput 3D lattice protein studies

Open Access (2008)

Bmc Genomics, Biomed Central, Athanasia Sp, Xiaowei Wang, Huajun Wang, Stefan Dragnev, ...

Research article A comprehensive collection of experimentally validated primers for Polymerase Chain Reaction quantitation of murine transcript abundance

BMC Medical Informatics and Decision Making (2008)

Biomed Central

Research article No paper, but the same routines: a qualitative exploration of experiences in two Norwegian hospitals deprived of the paper based medical record

BMC Medical Informatics and Decision Making (2008)

Biomed Central, Ruben Amarasingham, Marie Diener-west, Laura Plantinga, Aaron C Cunningham, Darrell J Gaskin, ...

Research article Hospital characteristics associated with highly automated and usable clinical information systems in Texas, United States

BMC Medical Research Methodology (2008)

Biomed Central, Frank Peinemann, Natalie Mcgauran, Stefan Sauerl

Research article Disagreement in primary study selection between systematic reviews on negative pressure wound therapy

Southern Rural Access Program (2008)

Biomed Central, Donald E Pathman, Emmeline Chuang

Research article Effectiveness of a grant program's efforts to promote synergy within its funded initiatives: perceptions of participants of the

BMC Medical Research Methodology (2008)

Biomed Central, Edward Fottrell, Peter Byass, Yemane Berhane, Open Access

Research article Demonstrating the robustness of population surveillance data: implications of error rates on demographic and mortality estimates

Proceedings Forty years of SNOMED: a literature review (2008)

Biomed Central, Ronald Cornet, Nicolette De Keizer

© 2008 Cornet and de Keizer; licensee BioMed Central Ltd. This is an open access article distributed under the terms of the Creative Commons Attribution License

BMC Medical Informatics and Decision Making (2008)

Biomed Central, Toomas Timpka, Henrik Eriksson, Johnny Ludvigsson, Joakim Ekberg, Sam Nordfeldt, ...

Research article Web 2.0 systems supporting childhood chronic disease management: A pattern language representation of a general architecture

Interview for DSM-IV (SCID-I) (2008)

Biomed Central, Almudena Sanchez-villegas, Javier Schlatter, Felipe Ortuno, Francisca Lahortiga, Jorge Pla, ...

Research article Validity of a self-reported diagnosis of depression among

BMC Medical Research Methodology (2008)

Biomed Central, Carlos Antônio, St Santos, Rosemeire L Fiaccone, Nelson F Oliveira, Sérgio Cunha, ...

Research article Estimating adjusted prevalence ratio in clustered cross-sectional epidemiological data

BMC Medical Research Methodology (2008)

Biomed Central, Guimin Gao, Wen Wan, Sijian Zhang, David T Redden, David B Allison, ...

Research article Testing for differences in distribution tails to test for differences in 'maximum ' lifespan

BMC Medical Research Methodology (2008)

Biomed Central, Evelyn J Bromet, Semyon F Gluzman, Victoria Zakhozha, Vlodomyr Paniotto, Open Access

Research article Determinants of participation in a longitudinal two-stage study of the health consequences of the Chornobyl nuclear power plant accident

BMC Medical Research Methodology (2008)

Biomed Central, Shubhada Sinha, Phyo K Myint, Robert N Luben, Kay-tee Khaw, Open Access

Research article Accuracy of death certification and hospital record linkage for identification of incident stroke

First aid guidelines for psychosis in Asian countries: A Delphi consensus study (2008)

Biomed Central, Anthony F Jorm, Harry Minas, Robyn L Langl, Claire M Kelly

This is an Open Access article distributed under the terms of the Creative Commons Attribution License

BMC Medical Informatics and Decision Making (2008)

Biomed Central, Amir R Razavi, Hans Gill, Hans Åhlfeldt, Nosrat Shahsavar, Open Access

Research article Non-compliance with a postmastectomy radiotherapy guideline: Decision tree and cause analysis

BMC Medical Research Methodology (2008)

Biomed Central, David Ogilvie, Debra Fayter, Mark Petticrew, A Sowden, Sian Thomas, ...

Research article The harvest plot: A method for synthesising evidence about the differential effects of interventions

Caroline Elie, Joël Coste * for the French Society of Clinical Cytology Study Group Open Access (2008)

Biomed Central

Research article A methodological framework to distinguish spectrum effects from spectrum biases and to assess diagnostic and screening test accuracy for patient populations: Application to the...

BMC Medical Research Methodology (2008)

Biomed Central, Danielle A Southern, Steven Lewis, Colleen J Maxwell, James R Dunn, Tom W Noseworthy, ...

Research article Sampling 'hard-to-reach ' populations in health research: yield from a study targeting Americans living in Canada

BMC Medical Informatics and Decision Making (2008)

Biomed Central, Johanna Castrén, Kristina Kunttu, Kristina Kunttu

Research article Users and non-users of web-based health advice service among Finnish university students – chronic conditions and self-reported health status (a cross-sectional study)

BMC Medical Informatics and Decision Making (2008)

Biomed Central, Tom Christensen, Anders Grimsmo

Research article Instant availability of patient records, but diminished availability of patient information: A multi-method study of GP's use of electronic patient records

BMC Medical Research Methodology (2008)

Biomed Central, Charlotte C Gard, Elizabeth R Brown

Research article A coarsened multinomial regression model for perinatal mother to child transmission of HIV

BMC Medical Research Methodology (2008)

Biomed Central, Linda Wittkop, Daniel Commenges, Isabelle Pellegrin, Dominique Breilh, Didier Neau, ...

Research article Alternative methods to analyse the impact of HIV mutations on virological response to antiviral therapy

BMC Medical Informatics and Decision Making (2008)

Biomed Central, Judith Green, Zoe Mcdowall, Henry Ww Potts

Research article Does Choose & Book fail to deliver the expected choice to patients? A survey of patients ' experience of outpatient appointment booking

Source Code for Biology and Medicine (2008)

Biomed Central, Joy Scaria, Aswathy Sreedharan, Yung-fu Chang

Software review Microbial Diagnostic Array Workstation (MDAW): a web server for diagnostic array data storage, sharing and analysis

BMC Medical Informatics and Decision Making (2008)

Biomed Central, Sara Urowitz, David Wiljer, Emma Apatu, Gunther Eysenbach, Claudette Delenardo, ...

Research article Is Canada ready for patient accessible electronic health records? A national scan

BMC Medical Research Methodology (2008)

Biomed Central, Angel M Cronin, Andrew J Vickers, Angel M Cronin, Andrew J Vickers

Research article Statistical methods to correct for verification bias in diagnostic studies are inadequate when there are few false negatives: a simulation study

BMC Medical Research Methodology (2008)

Biomed Central, Lawrence N Kazembe, Tobias F Chirwa, Jupiter S Simbeye, Jimmy J Namangale, Jupiter S Simbeye, ...

Research article Applications of Bayesian approach in modelling risk of malaria-related hospital mortality

BMC Medical Research Methodology (2008)

Biomed Central, Gerta Rücker, Martin Schumacher

Research article Simpson's paradox visualized: The example of the Rosiglitazone meta-analysis

BMC Medical Research Methodology (2008)

Biomed Central, Kris Denhaerynck, Petra Schäfer-keller, James Young, Jürg Steiger, Andreas Bock, ...

Research article Examining assumptions regarding valid electronic monitoring of medication therapy: development of a validation framework and its application on a European sample of kidney transplant...

BMC Medical Research Methodology (2008)

Biomed Central, Lucas M Bachmann, Andrea Mühleisen, Annekatrin Bock, Gerben Ter, Ulrike Held, ...

Research article Vignette studies of medical choice and judgement to study caregivers ' medical decision behaviour: systematic review

BMC Genomics (2008)

Biomed Central

Research article LTR retrotransposons reveal recent extensive inter-subspecies nonreciprocal recombination in Asian cultivated rice

BMC Medical Research Methodology (2008)

Biomed Central, Niels C Moeller, Lars Korsholm, Peter L Kristensen, Lars B Andersen, Karsten Froberg

Research article Unit-specific calibration of Actigraph accelerometers in a mechanical setup – Is it worth the effort? The effect on random output variation caused by technical inter-instrument...

BMC Medical Research Methodology (2008)

Biomed Central, Vegar Rangul, Turid Lingaas Holmen, Nanna Kurtze, Koenraad Cuypers, Kristian Midthjell, ...

Research article Reliability and validity of two frequently used self-administered physical activity questionnaires in adolescents

BMC Psychiatry (2008)

Biomed Central, Athula Sumathipala, Sisira Siribaddana, Suwin Hewege, Kethaki Sumathipala, Martin Prince, ...

Research article Understanding the explanatory model of the patient on their medically unexplained symptoms and its implication on treatment development research: a Sri Lanka Study

BMC Medical Informatics and Decision Making (2008)

Biomed Central, Anneke L Francke, Marieke C Smit, Patriek Mistiaen, Patriek Mistiaen

Research article Factors influencing the implementation of clinical guidelines for health care professionals: A systematic meta-review

BMC Medical Informatics and Decision Making (2008)

Biomed Central, Jennifer M Griffith, Carmen L Lewis, Alison Rt Brenner, Michael P Pignone

Research article The effect of offering different numbers of colorectal cancer screening test options in a decision aid: a pilot randomized trial

BMC Medical Research Methodology (2008)

Biomed Central, Melissa A Clark, Michelle L Rogers, Gene F Armstrong, William Rakowski, Frederick J Kviz

Research article Differential response effects of data collection mode in a cancer screening study of unmarried women ages 40–75 years: A randomized trial

BMC Psychiatry (2008)

Biomed Central

Research article The experience of admission to psychiatric hospital among Chinese adult patients in Hong Kong

BMC 32002, (2007)

Bmc Bioinformatics, Junbai Wang, Jan Delabie, Hans Christian Aasheim, Erlend Smel, Biomed Central, ...

Research article Clustering of the SOM easily reveals distinct gene expression patterns: results of a reanalysis of lymphoma study

BMC Bioinformatics Methodology article (2007)

Biomed Central, Nelson D Young, Nelson D Young, John Healy, John Healy

GapCoder automates the use of indel characters in phylogenetic analysis

3 Methodology article Universal sequence map (USM) of arbitrary discrete sequences (2007)

Jonas S Almeida, Susana Vinga, Biomed Central

© 2002 Almeida and Vinga; licensee BioMed Central Ltd. Verbatim copying and redistribution of this article are permitted in any medium for any purpose, provided this notice is preserved along with...

Methodology article 3 (2007)

Biomed Central, Peter Hof, Claudia Ortmeier, Kirstin Pape, Birgit Reitmaier

Digital analysis of cDNA abundance; expression profiling by means of restriction fragment fingerprinting

BMC 22002, Public Health x (2007)

Biomed Central, John W Sellors, Robert Hayward, Graham Swanson, Anita Ali, Brian Haynes, ...

Research article Comparison of deferral rates using a computerized versus written blood donor questionnaire: a randomized, cross-over study [ISRCTN84429599]

BMC Structural Biology BMC 22002, Structural Biology x (2007)

Biomed Central, Ram Samudrala, Michael Levitt

Background: We thoroughly analyse the results of 40 blind predictions for which an experimental answer was made available at the fourth meeting on the critical assessment of protein structure methods...

BioMed Central (2007)

Bmc Bioinformatics Open, Agris Arabidopsis, Gene Regulatory, Information Server, Ramana V Davuluri, Hao Sun, ...

Background: The gene regulatory information is hardwired in the promoter regions formed by cis-regulatory elements that bind specific transcription factors (TFs). Hence, establishing the architecture...

BioMed Central (2007)

Bmc Medical Informatics, Emilia Bielli, Fabio Carminati, Stella La Capra, Biomed Central, Micaela Lina, ...

Background: Health-Related Quality of Life assessment is widely used in clinical research, but rarely in clinical practice. Barriers including practical difficulties administering printed...

BMC Medical Informatics and Decision Making (2007)

Biomed Central, Jean-charles Dufour, Dominique Fieschi, Marius Fieschi, Marius Fieschi

Research article Coupling computer-interpretable guidelines with a drug-database through a web-based system – The PRESGUID project

BMC Medical Informatics and Decision Making (2007)

Biomed Central, Kathleen Ann Mckibbon, Kathleen Ann Mckibbon, Cynthia S Gadd

Research article A quantitative analysis of qualitative studies in clinical journals for the 2000 publishing year

International Journal of Health (2007)

Karishma Busgeeth, Ulrike Rivett, Biomed Central

Background: South Africa is experiencing an HIV/AIDS pandemic of shattering dimensions. The availability and provision of antiretroviral (ARV) drugs could bring relief to the situation, but the...

BMC Systems Biology Poster presentation (2007)

Imtiaz Khan, Janet Fisher, Nuria Marquez, Paul Smith, Rachel Errington, Biomed Central

A bioinformatics approach for the interrogation of molecular events in single cells: transforming fluorescent time-lapse microscopy images into numbers

* Corresponding authors (2007)

Bmc Bioinformatics, Trevor I Dix, David R Powell, Lloyd Allison, Julie Bernal, Samira Jaeger, ...

Comparative analysis of long DNA sequences by per element information content using different contexts

BMC Medical Informatics and Decision Making (2007)

Biomed Central, Ana M Ferreira, Filipa C Almeida, Jeremy C Wyatt, ...

Research article Reviewing the integration of patient data: how systems are evolving in practice to meet patient needs

Open Access (2007)

Bmc Biotechnology, Biomed Central

Research article High content image analysis for human H4 neuroglioma cells exposed to CuO nanoparticles

BMC Developmental Biology (2007)

Angel R Barchuk, Re S Cristino, Robert Kucharski, Luciano F Costa, Zilá Lp Simões, Ryszard Maleszka, ...

Research article Molecular determinants of caste differentiation in the highly eusocial honeybee Apis mellifera

BMC Structural Biology Methodology article Prediction of flexible/rigid regions from protein sequences using k-spaced amino acid pairs (2007)

Ke Chen, Lukasz A Kurgan, Jishou Ruan, Biomed Central

© 2007 Chen et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License

from BioSysBio 2007: Systems Biology, Bioinformatics and Synthetic Biology (2007)

David Jg Bakewell, Ernst Wit, Biomed Central

Interpreting gene transcription for understanding cellular processes using DNA microarray measurements presents a number of challenges to the investigator. One of these is the relatively large number...

Open Access (2007)

Marie-ka Tilak, Emmanuel Jp Douzery, Biomed Central

OrthoMaM: A database of orthologous genomic markers for placental mammal phylogenetics

BMC Systems Biology (2007)

Pierre R Bushel, Russell D Wolfinger, Greg Gibson, Biomed Central

Research article Simultaneous clustering of gene expression data with clinical chemistry and pathological evaluations reveals phenotypic prototypes

processing of spoken language (2007)

Bmc Neuroscience, Marte Otten, Mante S Nieuwl, Jos Ja, Van Berkum, Biomed Central

Great expectations: Specific lexical anticipation influences the

Open Access (2007)

Susan S Huang, James M Livingston, Nigel Sb Rawson, Steven Schmaltz, Richard Platt, Biomed Central

Software Developing algorithms for healthcare insurers to systematically monitor surgical site infection rates

BMC Medical Informatics and Decision Making (2007)

Wei Yu, Ajay Yesupriya, Anja Wulf, Junfeng Qu, Marta Gwinn, Muin J Khoury, ...

Research article An automatic method to generate domain-specific investigator networks using PubMed abstracts

WiSP (2007)

Bmc Genomics, Biomed Central, My-van La, Nicolas Crapoulet, Pascal Barbry, Didier Raoult, ...

Research article Comparative genomic analysis of Tropheryma whipplei strains reveals that diversity among clinical isolates is mainly related to the

BMC Bioinformatics (2007)

Biomed Central, Jianlin Cheng, Pierre Baldi, Open Access

Research article Improved residue contact prediction using support vector machines and a large feature set

BMC Proceedings (2007)

Biomed Central

Proceedings Model selection based on logistic regression in a highly correlated candidate gene region

BMC Bioinformatics Research Towards Semantic e-Science for Traditional Chinese Medicine (2007)

Huajun Chen, Yuxin Mao, Xiaoqing Zheng, Meng Cui, Yi Feng, Shuiguang Deng, ...

Background: Recent advances in Web and information technologies with the increasing decentralization of organizational structures have resulted in massive amounts of information resources and...

BMC Medical Research Methodology (2007)

Jan O Friedrich, Neill Kj Adhikari, Joseph Beyene, Biomed Central

Research article Inclusion of zero total event trials in meta-analyses maintains analytic consistency and incorporates all available data

BMC Medical Informatics and Decision Making (2007)

Biomed Central, Cilia Lm Witteman, Silja Renooij, Pieter Koele

Research article Medicine in words and numbers: a cross-sectional survey comparing probability assessment scales

Research article Multiple non-collinear TF-map alignments of promoter regions (2007)

Bmc Bioinformatics, Enrique Blanco, Roderic Guigó, Xavier Messeguer, Biomed Central

This is an Open Access article distributed under the terms of the Creative Commons Attribution License

BMC Systems Biology (2007)

Yu Feng Wu, Ekaterina Myasnikova, John Reinitz, Biomed Central

Research article Master equation simulation analysis of immunostained Bicoid morphogen gradient

BMC Structural Biology (2007)

Andrei L Lomize, Irina D Pogozheva, Mikhail A Lomize, Henry I Mosberg, Biomed Central

Research article The role of hydrophobic interactions in positioning of peripheral proteins in membranes

BMC Genomics Methodology article The full-ORF clone resource of the German cDNA Consortium (2007)

Stephanie Bechtel, Heiko Rosenfelder, Anny Duda, Christian Peter Schmidt, Ute Ernst, Ruth Wellenreuther, ...

© 2007 Bechtel et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License

Open Access (2007)

Xin-yu Zhu, Mark W Chase, Yin-long Qiu, Hong-zhi Kong, David L Dilcher, Jian-hua Li, ...

Research article Mitochondrial matR sequences help to resolve deep phylogenetic relationships in rosids

BMC Bioinformatics Methodology article A Bayesian nonparametric method for prediction in EST analysis (2007)

Antonio Lijoi, Ramsés H Mena, Igor Prünster, Biomed Central

This is an Open Access article distributed under the terms of the Creative Commons Attribution License

BMC Molecular Biology (2007)

Biomed Central, Kirmo Wartiovaara

Software PlasmaDNA: a free, cross-platform plasmid manipulation program for molecular biology laboratories

Database (2007)

Bmc Bioinformatics, Timur Shtatl, Daniel Guettler, Misha Kossodo, Misha Pivovarov, Ralph Weissleder, ...

PepBank- a database of peptides based on sequence text mining and public peptide data sources

BMC Biochemistry (2007)

Dino Bullinger, Hans Neubauer, Tanja Fehm, Stefan Laufer, Christoph H Gleiter, Bernd Kammerer, ...

Research article Metabolic signature of breast cancer cell line MCF-7: profiling of modified nucleosides via LC-IT MS coupling

BMC Genomics Research article Comparison of protein coding gene contents of the fungal phyla (2007)

Mikko Arvas, Teemu Kivioja, Alex Mitchell, Markku Saloheimo, David Ussery, Merja Penttila, ...

This is an Open Access article distributed under the terms of the Creative Commons Attribution License

BMC Bioinformatics Methodology article (2007)

Martin Strauch, Dierk Wanke, Klaus Harter, Andreas Zell, Biomed Central

EDISA: extracting biclusters from multiple time-series of gene expression profiles

BMC Systems Biology Database (2007)

Roberta Alfieri, Ivan Merelli, Ettore Mosca, Luciano Milanesi, Biomed Central

A data integration approach for cell cycle analysis oriented to model simulation in systems biology

Open Access (2007)

Bmc Genomics, Biomed Central

How many human genes can be defined as housekeeping with

BMC Medical Informatics and Decision Making (2007)

Biomed Central, Danielle M Lottridge, Mark Chignell, Romana Danicic-mizdrak, Nada J Pavlovic, Andre Kushniruk, ...

Research article Group differences in physician responses to handheld presentation of clinical evidence: a verbal protocol analysis

BMC Medical Research Methodology (2007)

Biomed Central, Anita Thapar, Gordon Harold, Frances Rice, Xiaojia Ge, Jacky Boivin, ...

Research article Do intrauterine or genetic influences explain the foetal origins of chronic disease? A novel experimental method for disentangling effects

BMC Psychiatry (2007)

Biomed Central

Research article Greater incidence of depression with hypnotic use than with placebo

and stability in Delphi studies (2007)

Biomed Central, Elizabeth A Holey, Jennifer L Feeley, John Dixon, Vicki J Whittaker

An exploration of the use of simple statistics to measure consensus

BMC Medical Informatics and Decision Making (2007)

Biomed Central, M Daumer, A Neuhaus, C Lederer, M Scholz, Js Wolinsky

Software Prognosis of the individual course of disease- steps in developing a decision support tool for Multiple Sclerosis

BMC Structural Biology (2007)

Biomed Central, David T Chyou, Vincent L Rawle, Clive Na Trotman

Research article Quaternary structure of Artemia haemoglobin II: analysis of T and C polymer alignment and interpolymer interface

BMC Medical Research Methodology (2007)

Biomed Central, Beverley J Shea, Jeremy M Grimshaw, George A Wells, Maarten Boers, Neil Andersson, ...

Research article Development of AMSTAR: a measurement tool to assess the methodological quality of systematic reviews

BMC Medical Informatics and Decision Making (2007)

Biomed Central, James G Dolan, Stephen Iadarola

Research article Risk communication formats for low probability events: an exploratory study of patient preferences

BMC Medical Informatics and Decision Making (2007)

Biomed Central, Michael L Jackson, Atar Baer, Ian Painter, Jeff Duchin, Open Access, ...

Research article A simulation study comparing aberration detection algorithms for syndromic surveillance

Swiss university hospital: cross-sectional study (2007)

Bmc Gastroenterology, Biomed Central, Stefan Russmann, Emmilia A Dowlatshahi, Gert Printzen, Susanne Habicht, ...

Research article Prevalence and associated factors of viral hepatitis and transferrin elevations in 5036 patients admitted to the emergency room of a

BMC Medical Informatics and Decision Making (2007)

Biomed Central, Morris L Rivera, Jason Donnelly, Blair A Parry, Anthony Dinizio, Charles L Johnson, ...

Research article Prospective, randomized evaluation of a personal digital assistant-based research tool in the emergency department

BMC Medical Research Methodology (2007)

Biomed Central, Alina Dragan, Noori Akhtar-danesh

Research article Relation between body mass index and depression: a structural equation modeling approach

BMC Medical Informatics and Decision Making (2007)

Biomed Central, Ruth M Sladek, Jennifer Tieman, David C Currow

Research article Improving search filter development: a study of palliative care literature

BMC Medical Research Methodology (2007)

Biomed Central, Maria E Tosti, Danilo Fusco, Carlo A Perucci

Research article Use of hierarchical models to evaluate performance of cardiac surgery centres in the Italian CABG outcome study

BMC Medical Research Methodology (2007)

Biomed Central, Carl Heneghan, Rafael Perera, Alison Ward A, David Fitzmaurice, Emma Meats, ...

Research article Assessing differential attrition in clinical trials: self-monitoring of oral anticoagulation and type II diabetes

BMC Medical Research Methodology (2007)

Biomed Central, Brian Mckinstry, Victoria Hammersley, Fergus Daly, Frank Sullivan

Research article Recruitment and retention in a multicentre randomised controlled trial in Bell's palsy: A case study

BMC Genomics (2007)

Biomed Central, Linda Wong, Caifu Chen

Research article Characterization of microRNA expression profiles in normal human tissues

BMC Medical Research Methodology (2007)

Biomed Central, Ulisses R Montarroyos, Patrícia Varejão, Patrícia Varejão, ...

Research article Selection bias: neighbourhood controls and controls selected from those presenting to a Health Unit in a case control study of efficacy of BCG revaccination Odimariles MS Dantas * 1,...

BMC Medical Research Methodology (2007)

Biomed Central, Rainford Wilks, Novie Younger, Jasneth Mullings, Namvar Zohoori

Research article Factors affecting study efficiency and item non-response in health surveys in developing countries: the Jamaica national healthy lifestyle survey

BMC Medical Informatics and Decision Making (2007)

Biomed Central, Patrick Ouvrard, Alain Venot

Research article An iconic language for the graphical representation of medical concepts

BMC Medical Informatics and Decision Making (2007)

Biomed Central, Rasmus Dahl, Dorte Gyrd-hansen, Ivar Sønbø Kristiansen, Jørgen Nexøe, Jesper Bo Nielsen

Research article Can postponement of an adverse outcome be used to present risk reductions to a lay audience? A population survey

BMC Medical Informatics and Decision Making (2007)

Biomed Central, Kenneth D M, William W Simons, William Cr Crawford, Kenneth D Mandl, William W Simons, ...

Software Indivo: a personally controlled health record for health information exchange and communication

BMC Medical Research Methodology (2007)

Biomed Central, Nadine Weisscher, Marinus Vermeulen, Open Access

Research article The impact of disease-related impairments on disability and health-related quality of life: a systematic review

BMC Medical Research Methodology (2007)

Biomed Central, Yoon K Loke, Deirdre Price

Technical advance Systematic reviews of adverse effects: framework for a structured approach

BMC Medical Research Methodology (2007)

Biomed Central, Richard D Riley, Keith R Abrams, Er J Sutton, Paul C Lambert, ...

Research article Bivariate random-effects meta-analysis and the estimation of between-study correlation

Methodology article (2006)

Bmc Genomics, Joy X Lei, Hui Shen, Boleslaw Lach, P Roy Walker, Joel Martin, ...

Novel subtractive transcription-based amplification of mRNA (STAR) method and its application in search of rare and differentially expressed genes in AD brains

BMC Medical Informatics and Decision Making (2006)

Harukazu Tsuruta, Leon Bax, Biomed Central

Research article Polychotomization of continuous variables in regression models based on the overall C index

BMC Bioinformatics Methodology article Discovery of time-delayed gene regulatory networks based on temporal (2006)

Xia Li, Shaoqi Rao, Wei Jiang, Chuanxing Li, Yun Xiao, Zheng Guo, ...

© 2006 Li et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License

GO (2006)

Bmc Bioinformatics, Holger Fröhlich, Nora Speer, Annemarie Poustka, Tim Beißbarth, Biomed Central, ...

Software GOSim – an R-package for computation of information theoretic

BMC Bioinformatics Methodology article (2006)

William W Cohen, Einat Minkov, Biomed Central

A graph-search framework for associating gene identifiers with documents

BMC Medical Informatics and Decision Making (2006)

Biomed Central, Sergey Goryachev, Scott Weiss, Margarita Sordo, Shawn N Murphy, Ross Lazarus, ...

Research article Extracting principal diagnosis, co-morbidity and smoking status for asthma research: evaluation of a natural language processing system

among algorithms (2006)

Bmc Bioinformatics, Sébastien Leclercq, Eric Rivals, Biomed Central

Detecting microsatellites within genomes: significant variation

thousand years of healing culture (2006)

Rainer W Bussmann, Douglas Sharon, Biomed Central, Rainer W Bussmann, Douglas Sharon

This paper examines the traditional use of medicinal plants in Northern Peru, with special focus on the Departments of Piura, Lambayeque, La Libertad, Cajamarca, and San Martin. Northern Peru...

Journal of Biomedical Discovery and Collaboration Focus A tutorial on information retrieval: basic terms and concepts (2006)

Wei Zhou, Neil R Smalheiser, Clement Yu, Biomed Central

This informal tutorial is intended for investigators and students who would like to understand the workings of information retrieval systems, including the most frequently used search engines: PubMed...

BMC Bioinformatics Methodology article A model-based approach to selection of tag SNPs (2006)

Pierre Nicolas, Fengzhu Sun, Lei M Li, Biomed Central

© 2006 Nicolas et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License

network of Escherichia (2006)

Rainer König, Gunnar Schramm, Marcus Oswald, Hanna Seitz, Sebastian Sager, Marc Zapatka, ...

Discovering functional gene expression patterns in the metabolic

BMC Medical Informatics and Decision Making Database NIDDK data repository: a central collection of clinical trial data (2006)

A Jamie Cuticchia, Philip C Cooley, R David Hall, Ying Qin, Biomed Central

Background: The National Institute of Diabetes and Digestive and Kidney Diseases have established central repositories for the collection of DNA, biological samples, and clinical data to be...

deprivation (2006)

Bmc Bioinformatics, Gunnar Schramm, Marc Zapatka, Rainer König, Biomed Central, Rainer König

Using gene expression data and network topology to detect substantial pathways, clusters and switches during oxygen

The neurochemical basis of human cortical auditory processing: combining proton magnetic resonance spectroscopy and magnetoencephalography (2006)

Peter Sörös, Nikolaus Michael, Biomed Central, Melanie Tollkötter, Melanie Tollkötter, Bettina Pfleiderer, ...

Background: A combination of magnetoencephalography and proton magnetic resonance spectroscopy was used to correlate the electrophysiology of rapid auditory processing and the neurochemistry of the...

Biology Direct Review A survey of motif discovery methods in an integrated framework (2006)

Geir Kjetil S, Finn Drabløs, Biomed Central, Reviewed Eugene, V. Koonin

Background: There has been a growing interest in computational discovery of regulatory elements, and a multitude of motif discovery methods have been proposed. Computational motif discovery has been...

BMC Evolutionary Biology (2006)

Panayiotis Tsaparas, Leonardo Mariño-ramírez, Olivier Bodenreider, Eugene V Koonin, I King Jordan, Biomed Central

Research article Global similarity and local divergence in human and mouse gene co-expression networks

BMC Bioinformatics Research article Prediction of protein structural class with Rough Sets (2006)

Youfang Cao, Shi Liu, Lida Zhang, Jie Qin, Jiang Wang, Kexuan Tang, ...

Background: A new method for the prediction of protein structural classes is constructed based on Rough Sets algorithm, which is a rule-based data mining method. Amino acid compositions and 8...

Open Access (2006)

Bmc Bioinformatics, Casper J Albers, Ritsert C Jansen, Jan Kok, Oscar P Kuipers, Biomed Central

Software SIMAGE: simulation of DNA-microarray gene expression data

Journal of Biomedical Discovery and Collaboration (2006)

Biomed Central, Neil R Smalheiser, Vetle I Torvik, A Bischoff-grethe, Lauren B Burhans, Michael Gabriel, ...

Collaborative development of the Arrowsmith two node search interface designed for laboratory investigators

biology (2006)

Michael Baitaluk, Xufei Qian, Shubhada Godbole, Alpan Raval, Animesh Ray, Amarnath Gupta, ...

PathSys: integrating molecular interaction graphs for systems

BMC Women's Health (2006)

Wendy S Rubinstein, Jean J Latimer, Jules H Sumkin, Michelle Huerbin, Stephen G Grant, Victor G Vogel, ...

Research article Prospective screening study of 0.5 Tesla dedicated magnetic resonance imaging for the detection of breast cancer in young, high-risk women

BMC Bioinformatics Methodology article Application of machine learning in SNP discovery (2006)

Lakshmi K Matukumalli, John J Grefenstette, David L Hyten, Young Choi, Perry B Cregan, ...

This is an Open Access article distributed under the terms of the Creative Commons Attribution License

Open Access (2006)

Yifei Yin, Yi Zhao, Jie Wang, Changning Liu, Shuguang Chen, Runsheng Chen, ...

© 2007 Yin et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License

Research article (2006)

Bmc Bioinformatics, Lars Snipen, Dirk Repsilber, Ludvig Nyquist, Andreas Ziegler, Ågot Aakra, ...

Detection of divergent genes in microbial aCGH experiments

analyses and evidence integration for protein characterization (2006)

Marisa W Lam, Jason R Smith, Adam T Zemla, Matthew D Dyer, Thomas A Kuczmarski, ...

© 2006 Zhou et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License

Algorithms for Molecular Biology (2006)

Jonas S Almeida, Susana Vinga, Biomed Central, Jonas S Almeida, Susana Vinga

Computing distribution of scale independent motifs in biological sequences

differentially (2006)

Alvin Berger, Matthew A Roberts, Bruce Hoff, Biomed Central

How dietary arachidonic- and docosahexaenoic- acid rich oils

BMC Medical Research Methodology (2006)

Biomed Central, Javier Zamora, Victor Abraira, Alfonso Muriel, Khalid Khan

Software Meta-DiSc: a software for meta-analysis of test accuracy data

BMC Medical Research Methodology (2006)

Biomed Central, Carolyn Day

Technical advance Using intervention time series analyses to assess the effects of imperfectly identifiable natural events: a general method and example

BMC Medical Research Methodology (2006)

Biomed Central, Nynke Smidt, Anne Ws Rutjes, Raymond Wjg Ostelo, Patrick M Bossuyt, ...

Research article Reproducibility of the STARD checklist: an instrument to assess the quality of reporting of diagnostic accuracy studies

Source Code for Biology and Medicine (2006)

Biomed Central, Christopher Besemann, Anne Denton, Nathan J Carr, Nathan J Carr, ...

BISON: bio-interface for the semi-global analysis of network patterns

BMC Medical Research Methodology (2006)

Biomed Central, Bin Zhu, Stephen D Walter, Peter L Rosenbaum, Dianne J Russell, Parminder Raina, ...

Research article Structural equation and log-linear modeling: a comparison of methods in the analysis of a study on caregivers ' health

Open Access (2006)

Biomed Central, Ian Shemilt, A Mugford, Michael Drummond, Eric Eisenstein, Jacqueline Mallender, ...

Research article Economics methods in Cochrane systematic reviews of health promotion and public health related interventions

BMC Medical Informatics and Decision Making (2006)

Biomed Central, Alan Schwartz, Gregory Millam

Software A web-based library consult service for evidence-based medicine: Technical development

BMC Medical Research Methodology (2006)

Biomed Central, Brian H Rowe, Trevor L Strome, Carol Spooner, Ra Blitz, Eric Grafstein, ...

Research article Reviewer agreement trends from four years of electronic

BMC Medical Research Methodology (2006)

Biomed Central, Mary Dixon-woods, Debbie Cavers, Shona Agarwal, Ellen Ann, Antony Arthur, ...

Technical advance Conducting a critical interpretive synthesis of the literature on access to healthcare by vulnerable groups

BMC Medical Informatics and Decision Making (2006)

Biomed Central, Patrick Boissy, Karen Jacobs

Research article Usability of a barcode scanning system as a means of data entry on a PDA for self-report health outcome questionnaires: a pilot study in individuals over 60 years of age

Generic ICF Core Set based on regression modelling (2006)

Biomed Central, Alarcos Cieza, Szilvia Geyh, Somnath Chatterji, Nenad Kostanjsek, Bedirhan T Üstün, ...

Research article Identification of candidate categories of the International Classification of Functioning Disability and Health (ICF) for a

PLUTO study (2006)

Biomed Central, Mayke Bg Koek, Erik Buskens, Paul Ha Steegmans, Huib Van Weelden

UVB phototherapy in an outpatient setting or at home: a pragmatic randomised single-blind trial designed to settle the discussion. The

BMC Medical Informatics and Decision Making (2006)

Biomed Central, Dewar D Finlay, Chris D Nugent, Mark P Donnelly, Robert L Lux, Paul J Mccullagh, ...

Technical advance Selection of optimal recording sites for limited lead body surface potential mapping: A sequential selection based approach

BMC Medical Research Methodology (2006)

Biomed Central, Li Zhang, Isola Ajiferuke, Margaret Sampson, Open Access

Research article Optimizing search strategies to identify randomized controlled trials in MEDLINE

BMC Medical Research Methodology (2006)

Biomed Central, Peyman Jafari, Seyyed Mohammad, Taghi Ayatollahi, Javad Behboodian, Javad Behboodian

Research article Sequential boundaries approach in clinical trials with unequal allocation ratios

BMC Medical Research Methodology (2006)

Biomed Central, Michele L Shaffer, Michele L Shaffer, Kristi L Watterberg

Research article Joint distribution approaches to simultaneously quantifying benefit and risk

BMC Medical Informatics and Decision Making (2006)

Biomed Central, Sacha E Bleeker, Gerarda Derksen-lubsen, Henriëtte A Moll

Research article Structured data entry for narrative data in a broad specialty: patient history and physical examination in pediatrics

BMC Medical Informatics and Decision Making (2006)

Biomed Central, Lameck Diero, Joseph K Rotich, John Bii, Burke W Mamlin, Robert M Einterz, ...

Research article A computer-based medical record system and personal digital assistants to assess and follow patients with respiratory tract infections visiting a rural Kenyan health centre

BMC Medical Research Methodology (2006)

Biomed Central, Hannah Kuper, A Nicholson, Harry Hemingway, Open Access, Harry Hemingway

Research article Searching for observational studies: what does citation tracking add to PubMed? A case study in depression and coronary heart disease

BMC Medical Informatics and Decision Making (2006)

Biomed Central, Peyman Jafari, Francisco Azuaje

Research article An assessment of recently published gene expression data analyses: reporting experimental design and statistical factors

BMC Medical Research Methodology (2006)

Biomed Central, Rodney A Hayward, David M Kent, Eep Vijan

Research article Multivariable risk prediction can greatly enhance the statistical power of clinical trial subgroup analysis

Open Access (2006)

Biomed Central, Lydia Guittet, Bruno Giraudeau, Address Département D'epidémiologie

Research article Planning a cluster randomized trial with unequal cluster sizes: practical issues involving continuous outcomes

BMC Medical Research Methodology (2006)

Biomed Central, Maria Montez-rath, Cindy L Christiansen, Susan L Ettner, Susan Lovel, Amy K Rosen, ...

Research article Performance of statistical models to predict mental health and substance abuse cost

BMC Medical Research Methodology (2006)

Biomed Central, Su Golder, Yoon Loke, Heather M Mcintosh

Research article Room for improvement? A survey of the methods used in systematic reviews of adverse effects

BMC Medical Research Methodology (2006)

Biomed Central, Dorothea Nitsch, Susan Morton, Bianca L Destavola, Heather Clark, David A Leon

Research article How good is probabilistic record linkage to reconstruct reproductive histories? Results from the Aberdeen children of the 1950s study

BMC Medical Informatics and Decision Making (2006)

Biomed Central, Dean F Sittig, Michael A Krall, Richard H Dykstra, Allen Russell

Research article A survey of factors affecting clinician acceptance of clinical decision support

BMC Medical Research Methodology (2006)

Biomed Central, Mohamed M Shoukri, Nasser Elkum

Research article Interval estimation and optimal design for the within-subject coefficient of variation for continuous and binary variables

BMC Medical Research Methodology (2006)

Biomed Central, Rodolphe Thiébaut, Jérémie Guedj, Hélène Jacqmin-gadda, Geneviève Chêne, Pascale Trimoulet, ...

Research article Estimation of dynamical model parameters taking into account undetectable marker values

International Journal of Behavioral Nutrition and Physical Activity (2006)

Biomed Central, Samuel C Dumith, Denise P Gigante, Marlos R Domingues, Open Access

Stages of change for physical activity in adults from Southern Brazil: a population-based survey

Open Access (2006)

Biomed Central, Sébastien Lemieux, Sébastien Lemieux

Research article Probe-level linear model fitting and mixture modeling results in high accuracy detection of differential gene expression

BMC Medical Research Methodology (2006)

Biomed Central, Su Golder, Heather M Mcintosh, Yoon Loke, Open Access

Research article Identifying systematic reviews of the adverse effects of health care interventions

Open Access (2005)

Bmc Genetics, Biomed Central, Liang-ying Wei, Cheng-lung Huang, Chien-hsiun Chen, Hsiun Chen

Proceedings Data mining of the GAW14 simulated data using rough set theory and tree-based methods

BMC Medical Informatics and Decision Making (2005)

Biomed Central, George R Kim, Edward L Bartlett, Harold P Lehmann, Open Access

Research article Information resource preferences by general pediatricians in office settings: a qualitative study

BMC Bioinformatics Methodology article (2005)

Shuangge Ma, Xiao Song, Jian Huang, Biomed Central

Regularized binormal ROC method in disease classification using microarray data

BMC Bioinformatics (2005)

Biomed Central

Research article The distance-profile representation and its application to detection of distantly related protein families

BMC Bioinformatics Research article GeneRank: Using search engine technology for the analysis of microarray experiments (2005)

Julie L Morrison, Rainer Breitling, Desmond J Higham, David R Gilbert, Biomed Central, David R Gilbert

© 2005 Morrison et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License

BMC Medical Research Methodology (2005)

Farid Zayeri, Anoshirvan Kazemnejad, Navid Khanafshar, Fatemeh Nayeri, Biomed Central, Fatemeh Nayeri

Research article Modeling repeated ordinal responses using a family of power transformations: application to neonatal hypothermia data

ultrasound (2005)

Farhang Sahba, Hamid R Tizhoosh, Magdy M Salama, Biomed Central

A coarse-to-fine approach to prostate boundary segmentation in

BMC Bioinformatics Supplement Preface Overview of BioCreAtIvE: critical assessment of information extraction for biology (2005)

Lynette Hirschman, Er Yeh, Christian Blaschke, Alfonso Valencia, Biomed Central, Alfonso Valencia

Background: The goal of the first BioCreAtIvE challenge (Critical Assessment of Information Extraction in Biology) was to provide a set of common evaluation tasks to assess the state of the art for...

Automatic Detection of False Annotations Via Binary Property Clustering (2005)

Noam Kaplan, Michal Linial, Biomed Central

Background: Computational protein annotation methods occasionally introduce errors. Falsepositive (FP) errors are annotations that are mistakenly associated with a protein. Such false annotations...

analysis on (2005)

Bmc Genomics, Biomed Central, Yvan Charbonnier, Brian Gettler, Patrice François, Manuela Bento, ...

Research article A generic approach for the design of whole-genome oligoarrays, validated for genomotyping, deletion mapping and gene expression

BMC Bioinformatics Methodology article Quality control for terms and definitions in ontologies and taxonomies (2005)

Jacob Köhler, Katherine Munn, Er Rüegg, Andre Skusa, Barry Smith, Biomed Central, ...

© 2006 Köhler et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License

BMC Medical Informatics and Decision Making (2005)

Biomed Central, Michael Muin, Paul Fontelo, Fang Liu, Michael Ackerman

Software SLIM: an alternative Web interface for MEDLINE/PubMed searches – a preliminary study

Journal of NeuroEngineering and (2005)

Biomed Central, Emil Jovanov, Ar Milenkovic, Chris Otto

A wireless body area network of intelligent motion sensors for computer assisted physical rehabilitation

BMC Medical Imaging Research article Mindboggle: Automated brain labeling with multiple atlases (2005)

Arno Klein, Brett Mensh, Satrajit Ghosh, Jason Tourville, Joy Hirsch, Biomed Central, ...

Background: To make inferences about brain structures or activity across multiple individuals, one first needs to determine the structural correspondences across their image data. We have recently...

BMC Medical Informatics and Decision Making (2005)

David R Sutton, Paul Taylor, Kenneth Earle, Biomed Central

Research article Evaluation of PROforma as a language for implementing medical guidelines in a practical context

BMC Structural Biology Methodology article (2005)

Jieun Jeong, Piotr Berman, Teresa Przytycka, Biomed Central

Fold classification based on secondary structure – how much is gained by including loop topology?

BMC Medical Informatics and Decision Making (2005)

Biomed Central, Erik A Sauleau, Antoine Buemi

Research article Medical record linkage in health information systems by approximate string matching and clustering

BMC Medical Research Methodology (2005)

Biomed Central, Melissa C Brouwers, Mary E Johnston, Manya L Charette, Steve E Hanna, Ro R Jadad, ...

Research article Evaluating the role of quality assessment of primary studies in systematic reviews of cancer practice guidelines

BMC Medical Research Methodology (2005)

Biomed Central, Vidal Essebag, Robert W Platt, Michal Abrahamowicz, Louise Pilote, Michal Abrahamowicz, ...

Research article Comparison of nested case-control and survival analysis methodologies for analysis of time-dependent exposure

BMC Medical Research Methodology (2005)

Biomed Central, Simon D French, Steve Mcdonald, Joanne E Mckenzie, Sally E Green, Simon D French, ...

Research article Investing in updating: how do conclusions change when Cochrane systematic reviews are updated?

BMC Medical Research Methodology (2005)

Biomed Central, Yuji Nishiwaki, Heather Clark, David A Leon, David A Leon

Research article Early life factors, childhood cognition and postal questionnaire response rate in middle age: the Aberdeen Children of the 1950s study

BMC Medical Research Methodology (2005)

Biomed Central, Leslie A Hayduk, Hannah Pazderka-robinson, Greta G Cummings

Research article Structural equation model testing and the quality of natural killer cell activity measurements

© 2006Mignini and Khan; licensee BioMed Central Ltd. (2005)

Biomed Central, Luciano E Mignini, Khalid S Khan, Luciano E Mignini, Khalid S Khan

Research article Methodological quality of systematic reviews of animal studies: a survey of reviews of basic research

BMC Medical Informatics and Decision Making (2005)

Biomed Central, Jennifer L Holl, Nancy L Wilczynski, R Brian Haynes

Research article Optimal search strategies for identifying sound clinical prediction studies in EMBASE

BMC Medical Research Methodology (2005)

Biomed Central, Pamela Royle, Lynda Bain, Norman Waugh

Research article Systematic reviews of epidemiology in diabetes: finding the evidence

BMC Medical Informatics and Decision Making (2005)

Biomed Central, Dongquan Chen, Helmuth F Orthner, Susan M Sell

Software Personalized online information search and visualization

BMC Medical Informatics and Decision Making (2005)

Biomed Central, R Brian Haynes, Monika Kastner, Nancy L Wilczynski, The Hedges

Research article Developing optimal search strategies for detecting clinically sound and relevant causation studies in EMBASE

BMC Medical Research Methodology (2005)

Biomed Central, Jean Gaudart, Belco Poudiougou, Stéphane Ranque

Research article Oblique decision trees for spatial pattern detection: optimal algorithm and application to malaria risk

BMC Medical Informatics and Decision Making (2005)

Biomed Central, Sonal Singh, James G Dolan, Robert M Centor

Research article Optimal management of adults with pharyngitis – a multi-criteria decision analysis

BMC Medical Research Methodology (2005)

Biomed Central, Iréne Lund, Thomas Lundeberg, Louise S, Cecilia Norrbrink Budh, Jan Kowalski, ...

Research article Lack of interchangeability between visual analogue and verbal rating pain scales: a cross sectional description of pain etiology groups

Minor psychiatric disorders among Brazilian ragpickers: a cross-sectional study (2005)

Biomed Central, Anaclaudia Gastal Fassa, David Kriebel, David Kriebel

This is an Open Access article distributed under the terms of the Creative Commons Attribution License

BMC Medical Research Methodology (2005)

Biomed Central, Lydia Guittet, Bruno Giraudeau, Open Access

Research article A priori postulated and real power in cluster randomized trials: mind the gap

BMC Medical Research Methodology (2005)

Biomed Central, Stela Pudar Hozo, Benjamin Djulbegovic, Iztok Hozo

Research article Estimating the mean and variance from the median, range, and the size of a sample

Theoretical Biology and Medical (2005)

Biomed Central, Ekaterina Shelest, Edgar Wingender, Open Access

Construction of predictive promoter models on the example of antibacterial response of human epithelial cells

BMC Medical Research Methodology (2005)

Biomed Central, Rachel A Nakash, Jane L Hutton, Simon Gates

Research article Maximising response to postal questionnaires – A systematic review of randomised trials in health research

BMC Medical Research Methodology (2005)

Biomed Central

Research article Methods for confidence interval estimation of a ratio parameter with application to location quotients

Open Access (2005)

Bmc Bioinformatics, Biomed Central

Research article Refined repetitive sequence searches utilizing a fast hash function and cross species information retrievals Jeff Reneker1,2 and Chi-Ren Shyu * 1,2

BMC Medical Informatics and Decision Making (2004)

Omer Aziz, Sukhmeet S Panesar, Gopalakrishnan Netuveli, Paraskevas Paraskeva, Aziz Sheikh, Ara Darzi, ...

Research article Handheld computers and the 21st century surgical team: a pilot study

BMC Medical Informatics and Decision Making (2004)

Biomed Central, Martina Mueller, Carol L Wagner, David J Annibale, Thomas C Hulsey, ...

Research article Parameter selection for and implementation of a web-based decision-support tool to predict extubation outcome in premature infants

BMC Bioinformatics Research article Constraint Logic Programming approach to protein structure (2004)

Ro Dal Palù, Agostino Dovier, Federico Fogolari, Biomed Central

© 2004 Dal Palù et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License

Description and validation of a Markov model of survival for individuals free of cardiovascular disease that uses . . . (2004)

Biomed Central, Chris Martin, Mark V, Open Access, Joyce French, Joyce French

Background: Estimation of cardiovascular disease risk is increasingly used to inform decisions on interventions, such as the use of antihypertensives and statins, or to communicate the risks of...

Reproductive Biology and (2004)

Biomed Central, Christine A White, Lorraine Robb, Lois A Salamonsen, Open Access, Lois A Salamonsen

Uterine extracellular matrix components are altered during defective decidualization in interleukin-11 receptor α deficient mice

BMC Bioinformatics Methodology article Feature selection for splice site prediction: A new method using EDA-based feature ranking (2004)

Yvan Saeys, Sven Degroeve, Dirk Aeyels, Pierre Rouzé, Yves Van De, Biomed Central

Background: The identification of relevant biological features in large and complex datasets is an important step towards gaining insight in the processes underlying the data. Other advantages of...

prediction approaches (2004)

Bmc Bioinformatics, Paul P Gardner, Robert Giegerich, Biomed Central

A comprehensive comparison of comparative RNA structure

Research article Effective ambiguity checking in biosequence analysis (2004)

Bmc Bioinformatics, Janina Reeder, Peter Steffen, Robert Giegerich, Biomed Central, Robert Giegerich

© 2005 Reeder et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License

machines (2004)

Biomed Central, Ilias G Maglogiannis, Ilias G Maglogiannis, Elias P Zafiropoulos

Characterization of digital medical images utilizing support vector

BMC Bioinformatics Methodology article Target SNP selection in complex disease association studies (2004)

Matthias Wjst, Biomed Central, Matthias Wjst

Background: The massive amount of SNP data stored at public internet sites provides unprecedented access to human genetic variation. Selecting target SNP for disease-gene association studies is...

Open Access (2004)

Rainer Merkl, Biomed Central, Rainer Merkl

Background: Genomic islands can be observed in many microbial genomes. These stretches of DNA have a conspicuous composition with regard to sequence or encoded functions. Genomic islands are assumed...

macrolide resistance in Streptococcus pyogenes (2004)

Jari Jalava, Martti Vaara, Pentti Huovinen, Biomed Central

Background: In streptococci, three macrolide resistance determinants (erm(B), erm(TR) and mef(A)) have been found. In addition, certain mutations at the ribosomal 23S RNA can cause resistance to...

trials: Is there a "free lunch"? (2004)

Biomed Central, Stuart G Baker, Barnett S Kramer, Donald Corle, Open Access

The fallacy of enrolling only high-risk subjects in cancer prevention

BMC Medical Informatics and Decision Making (2004)

Biomed Central, Rachid Sammouda, Mohamed Sammouda

Research article Modification of the mean-square error principle to double the convergence speed of a special case of Hopfield neural network used to segment pathological liver color images

Gad Yagil* Open Access (2004)

Bmc Genomics, Biomed Central

Research article The over-representation of binary DNA tracts in seven sequenced chromosomes

BMC Medical Informatics and Decision Making (2004)

Biomed Central, Jules J Berman

Software Doublet method for very fast autocoding

BMC Medical Research Methodology (2004)

Biomed Central, Marion K Campbell, Jeremy M Grimshaw, Diana R Elbourne

Research article Intracluster correlation coefficients in cluster randomized trials: empirical insights into how should they be reported

BMC Medical Research Methodology (2004)

Biomed Central, James P Guevara, Jesse A Berlin

Research article Meta-analytic methods for pooling rates when follow-up duration varies: a case study

Ashwini Patil1,2 and Haruki Nakamura * 1 (2004)

Bmc Bioinformatics, Biomed Central

Research article Filtering high-throughput protein-protein interaction data using a combination of genomic features

BMC Medical Informatics and Decision Making (2004)

Biomed Central, Larry A Hembroff, Margaret Holmes-rovner

Research article Treatment decision-making and the form of risk communication: results of a factorial survey

doi:10.1186/1472- (2004)

Biomed Central, Margaret Holmes-rovner, Sue Stableford, Angela Fagerlin, John T Wei, Rodney L Dunn, ...

Research article Evidence-based patient choice: a prostate cancer decision aid in plain language

BMC Medical Informatics and Decision Making (2004)

Biomed Central, Lars Backlund, Ylva Skånér, Henry Montgomery, Johan Bring

Research article GPs ' decisions on drug treatment for patients with high cholesterol values: A think-aloud study

lectures (2003)

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