Anderson, Iain J, Dharmarajan, Lakshmi, Rodriguez, Jason, Hooper, Sean, Porat, Iris, Ulrich, Luke E, ...
Abstract Background Staphylothermus marinus is an anaerobic, sulfur-reducing peptide fermenter of the archaeal phylum Crenarchaeota. It is the third heterotrophic, obligate sulfur reducing...
Typescript (photocopy).
Mukhopadhyay, Biswarup, Johnson, Eric F., Wolfe, Ralph S.
The methanarchaeon, Methanococcus jannaschii, a hyperthermophilic, autotrophic, and strictly hydrogenotrophic inhabitant of submarine hydrothermal vents, was cultivated in a reactor at two hydrogen...
Mukhopadhyay, Biswarup, Johnson, Eric F., Ascano, Manuel
We describe a reactor-scale cultivation protocol for the fastest-growing and only known thermophilic member of the family Chlorobiaceae, Chlorobium tepidum. We discovered that C. tepidum would grow...
Mukhopadhyay, Biswarup, Johnson, Eric F., Wolfe, Ralph S.
For the hyperthermophilic and barophilic methanarchaeon Methanococcus jannaschii, we have developed a medium and protocols for reactor-scale cultivation that improved the final cell yield per liter...
Mukhopadhyay, Biswarup, Purwantini, Endang, Kreder, Cynthia L., Wolfe, Ralph S.
Evidence is presented that, in Methanosarcina barkeri oxaloacetate synthesis, an essential and major CO2 fixation reaction is catalyzed by an apparent α4β4-type acetyl coenzyme A-independent...
The Genome of M. acetivorans Reveals Extensive Metabolic and Physiological Diversity
Galagan, James E., Nusbaum, Chad, Roy, Alice, Endrizzi, Matthew G., Macdonald, Pendexter, FitzHugh, Will, ...
Methanogenesis, the biological production of methane, plays a pivotal role in the global carbon cycle and contributes significantly to global warming. The majority of methane in nature is derived...
Patel, Hiten M., Kraszewski, Jessica L., Mukhopadhyay, Biswarup
In Methanothermobacter thermautotrophicus, oxaloacetate synthesis is a major and essential CO2-fixation reaction. This methanogenic archaeon possesses two oxaloacetate-synthesizing enzymes, pyruvate...
Mukhopadhyay, Biswarup, Johnson, Eric F., Wolfe, Ralph S.
The methanarchaeon, Methanococcus jannaschii, a hyperthermophilic, autotrophic, and strictly hydrogenotrophic inhabitant of submarine hydrothermal vents, was cultivated in a reactor at two hydrogen...
Mukhopadhyay, Biswarup, Johnson, Eric F., Ascano, Manuel
We describe a reactor-scale cultivation protocol for the fastest-growing and only known thermophilic member of the family Chlorobiaceae, Chlorobium tepidum. We discovered that C. tepidum would grow...
Mukhopadhyay, Biswarup, Johnson, Eric F., Wolfe, Ralph S.
For the hyperthermophilic and barophilic methanarchaeon Methanococcus jannaschii, we have developed a medium and protocols for reactor-scale cultivation that improved the final cell yield per liter...
Mukhopadhyay, Biswarup, Purwantini, Endang, Kreder, Cynthia L., Wolfe, Ralph S.
Evidence is presented that, in Methanosarcina barkeri oxaloacetate synthesis, an essential and major CO2 fixation reaction is catalyzed by an apparent α4β4-type acetyl coenzyme A-independent...
The Genome of M. acetivorans Reveals Extensive Metabolic and Physiological Diversity
Galagan, James E., Nusbaum, Chad, Roy, Alice, Endrizzi, Matthew G., Macdonald, Pendexter, FitzHugh, Will, ...
Methanogenesis, the biological production of methane, plays a pivotal role in the global carbon cycle and contributes significantly to global warming. The majority of methane in nature is derived...
Patel, Hiten M., Kraszewski, Jessica L., Mukhopadhyay, Biswarup
In Methanothermobacter thermautotrophicus, oxaloacetate synthesis is a major and essential CO2-fixation reaction. This methanogenic archaeon possesses two oxaloacetate-synthesizing enzymes, pyruvate...
Establishment of a Gene Expression System in Ochrobactrum anthropi
Seleem, Mohamed N., Ali, Mohammed, Boyle, Stephen M., Mukhopadhyay, Biswarup, Witonsky, Sharon G., Schurig, Gerhardt G., ...
Genetic studies of Ochrobactrum anthropi are hindered by the lack of a suitable gene expression system. We constructed a set of vectors containing several promoters and a His tag fusion in the N...
Lai, Huafang, Kraszewski, Jessica L., Purwantini, Endang, Mukhopadhyay, Biswarup
Pyruvate carboxylase (PYC) is an ecologically, medically, and industrially important enzyme. It is widespread in all three domains of life, the archaea, bacteria, and eukarya. PYC catalyzes...
Anderson, Iain, Rodriguez, Jason, Susanti, Dwi, Porat, Iris, Reich, Claudia, Ulrich, Luke E., ...
We report the complete genome of Thermofilum pendens, a deeply branching, hyperthermophilic member of the order Thermoproteales in the archaeal kingdom Crenarchaeota. T. pendens is a...
Johnson, Eric F., Mukhopadhyay, Biswarup
Coenzyme F420-dependent sulfite reductase (Fsr) of Methanocaldococcus jannaschii, a sulfite-tolerant methanogen, was expressed with activity in Methanococcus maripaludis, a sulfite-sensitive...
Anderson, Iain J, Dharmarajan, Lakshmi, Rodriguez, Jason, Hooper, Sean, Porat, Iris, Ulrich, Luke E, ...
Genomic Characterization of Methanomicrobiales Reveals Three Classes of Methanogens
Anderson, Iain, Ulrich, Luke E., Lupa, Boguslaw, Susanti, Dwi, Porat, Iris, Hooper, Sean D., ...
Conversion of NO2 to NO by reduced coenzyme F420 protects mycobacteria from nitrosative damage
Purwantini, Endang, Mukhopadhyay, Biswarup
In mycobacteria, F420, a deazaflavin derivative, acts as a hydride transfer coenzyme for an F420-specific glucose-6-phosphate dehydrogenase (Fgd). Physiologically relevant reactions in the...
Kim, Kwang-Hyung, Willger, Sven D., Park, Sang-Wook, Puttikamonkul, Srisombat, Grahl, Nora, Cho, Yangrae, ...
The regulation of intracellular levels of reactive oxygen species (ROS) is critical for developmental differentiation and virulence of many pathogenic fungi. In this report we demonstrate that a...