Bmc Genomics, Jack Y Yang, Andrzej Niemierko, Mary Qu Yang, Youping Deng
Analyzing adjuvant radiotherapy suggests a non monotonic radio-sensitivity over tumor volumes
Bmc Genomics, Cristiano De Pittà, Cristiano Bertolucci, Gabriella M Mazzotta, Giorgia Rizzo, Barbara De Nardi, ...
Research article Systematic sequencing of mRNA from the Antarctic krill (Euphausia superba) and first tissue specific transcriptional signature
Bmc Genomics, Craig Lawless, Richard D Pearson, Julian N Selley, Julia B Smirnova, Christopher M Grant, ...
Research article Upstream sequence elements direct post-transcriptional regulation of gene expression under stress conditions in yeast
Bmc Genomics, Zhiming Dai, Xianhua Dai, Qian Xiang, Jihua Feng, Jiang Wang, ...
Research article Two distinct modes of nucleosome modulation associated with different degrees of dependence of nucleosome positioning on the underlying DNA sequence
Bmc Genomics, Anna Wetterbom, Ulf Gyllensten, Lucia Cavelier, Tomas F Bergström, Lucia Cavelier, ...
Research article Genome-wide analysis of chimpanzee genes with premature termination codons
Bmc Genomics, Biomed Central, Qianqian Zhu, Marc S Halfon
Research article Complex organizational structure of the genome revealed by genome-wide analysis of single and alternative promoters in
Bmc Genomics, David M Mcgaughey, Zachary E Stine, Jimmy L Huynh, Ryan M Vinton, Andrew S Mccallion, ...
Research article Asymmetrical distribution of non-conserved regulatory sequences at PHOX2B is reflected at the ENCODE loci and illuminates a possible genome-wide trend
Bmc Genomics, Lena G Fraser, Gianna K Tsang, Paul M Datson, Catherine F Harvey, ...
This Provisional PDF corresponds to the article as it appeared upon acceptance. Fully formatted PDF and full text (HTML) versions will be made available soon. A gene-rich linkage map in the dioecious...
Bmc Genomics, Emilie S Fritsch, Joseph Schacherer, Serge Potier, Emilie S. Fritsch, Joseph Schacherer, ...
This Provisional PDF corresponds to the article as it appeared upon acceptance. Fully formatted PDF and full text (HTML) versions will be made available soon. Influence of genetic background on the...
Bmc Genomics, Xuejiang Guo, Bing Su, Zuomin Zhou, Jiahao Sha, Xuejiang Guo, ...
This Provisional PDF corresponds to the article as it appeared upon acceptance. Fully formatted PDF and full text (HTML) versions will be made available soon. Rapid evolution of mammalian X-linked...
Bmc Genomics, Frederic Boyer, Gwennaele Fichant, Jeremie Berthod, Yves Vandenbrouck, Ina Attree, ...
This Provisional PDF corresponds to the article as it appeared upon acceptance. Fully formatted PDF and full text (HTML) versions will be made available soon. Dissecting the bacterial type VI...
Bmc Genomics, Brian Z Ring, Stella Chang, L Winston Ring, Robert S Seitz, Douglas T Ross, ...
Gene expression patterns within cell lines are predictive of
Evolution of the chicken Toll-like receptor gene family: A story of (2008)
Bmc Genomics, Nicholas D Temperley, Sofia Berlin, Ian R Paton, Darren K Griffin, David W Burt, ...
Research article
Repeats and EST analysis for new organisms (2008)
Bmc Genomics, Ketil Malde, Inge Jonassen
This Provisional PDF corresponds to the article as it appeared upon acceptance. Fully formatted PDF and full text (HTML) versions will be made available soon. Repeats and EST analysis for new...
Bmc Genomics, Mathijs A S, Roel Gw Verhaak, Saman Abbas, Sebastiaan Horsman, ...
Software SNPExpress: integrated visualization of genome-wide genotypes, copy numbers and gene expression levels
Bmc Genomics, Greta Petersen, Fredrik Stahl, Greta Petersen, Fredrik Ståhl
This Provisional PDF corresponds to the article as it appeared upon acceptance. Fully formatted PDF and full text (HTML) versions will be made available soon. RGST- Rat Gene Symbol Tracker, a...
Article type Correspondence (2008)
Bmc Genomics, Morgane Thomas-chollier, Valérie Ledent
This Provisional PDF corresponds to the article as it appeared upon acceptance. Fully formatted PDF and full text (HTML) versions will be made available soon. Comparative phylogenomic analyses of...
Article type Methodology article (2008)
Bmc Genomics, Cecilia Ritz, Cecilia Ritz, Patrik Edén
This Provisional PDF corresponds to the article as it appeared upon acceptance. Fully formatted PDF and full text (HTML) versions will be made available soon. Accounting for one-channel depletion...
Research Phylogenetic reconstruction from transpositions (2008)
Bmc Genomics, Feng Yue, Meng Zhang, Jijun Tang
© 2008 Yue et al; licensee BioMed Central Ltd. This is an open access article distributed under the terms of the Creative Commons Attribution License
BMC Genomics 2008, 9:542 doi:10.1186/1471-2164-9-542 (2008)
Bmc Genomics, Foo Cheung, Joe Win, Jillian M Lang, Sophien Kamoun, C Andre Levesque, ...
This Provisional PDF corresponds to the article as it appeared upon acceptance. Fully formatted PDF and full text (HTML) versions will be made available soon. Analysis of the Pythium ultimum...
Research Predicting protein disorder by analyzing amino acid sequence (2008)
Bmc Genomics, Jack Y Yang, Mary Qu Yang
This is an open access article distributed under the terms of the Creative Commons Attribution License
RNomics and Modomics in the halophilic archaea Haloferax volcanii: (2008)
Bmc Genomics, Henri Grosjean, Christine Gaspin, Christian Marck, Wayne A Decatur
identification of RNA modification genes
constraints or mispredictions? (2008)
Bmc Genomics, Albert Pallejà, Eoghan D Harrington, Peer Bork, Biomed Central
Large gene overlaps in prokaryotic genomes: result of functional
Research Inferring gene regulatory networks by thermodynamic modeling (2008)
Bmc Genomics, Chieh-chun Chen, Sheng Zhong
This is an open access article distributed under the terms of the Creative Commons Attribution License
Bmc Genomics, Antonios A Augustinos, Elias E Stratikopoulos, Eleni Drosopoulou, Evdoxia G Kakani, Penelope Mavragani-tsipidou, ...
Research article Isolation and characterization of microsatellite markers from the olive fly, Bactrocera oleae, and their cross-species amplification in the Tephritidae family
Bmc Genomics, Nathaniel Robert Street, Andreas Sjödin, Max Bylesjö, Petter Gustafsson, Johan Trygg, ...
Research article A cross-species transcriptomics approach to identify genes involved in leaf development
Bmc Genomics, Md Alamgir, Veronika Eroukova, Matthew Jessulat, Jianhua Xu, Ashkan Golshani
Research article Chemical-genetic profile analysis in yeast suggests that a previously uncharacterized open reading frame, YBR261C, affects protein synthesis
Dissecting microregulation of a master regulatory network (2008)
Bmc Genomics, Amit U Sinha, Vivek Kaimal, Jing Chen, Anil G Jegga, Anil G Jegga
This is an Open Access article distributed under the terms of the Creative Commons Attribution License
Bmc Genomics, Biomed Central, Athanasia Sp, Xiaowei Wang, Huajun Wang, Stefan Dragnev, ...
Research article A comprehensive collection of experimentally validated primers for Polymerase Chain Reaction quantitation of murine transcript abundance
Selective inhibition of yeast regulons by daunorubicin: A (2008)
Bmc Genomics, Marta Rojas, Marta Casado, José Portugal, Benjamin Piña
Research article
Bmc Genomics, Hélène Salin, Vivienne Fardeau, Eugenia Piccini, Gaelle Lel, Véronique Tanty, ...
Research article Structure and properties of transcriptional networks driving selenite stress response in yeasts
Bmc Genomics, Howard Kendrick, Joseph L Regan, Fiona-ann Magnay, Anita Grigoriadis, Costas Mitsopoulos, ...
Research article Transcriptome analysis of mammary epithelial subpopulations identifies novel determinants of lineage commitment and cell fate
Bmc Genomics, Seraya Maouche, Odette Poirier, Tiphaine Godefroy, Robert Olaso, Ivo Gut, ...
Research article Performance comparison of two microarray platforms to assess differential gene expression in human monocyte and macrophage cells
The RHNumtS compilation: Features and bioinformatics (2008)
Bmc Genomics, Daniela Lascaro, Stefano Castellana, Giovanni Romeo, Cecilia Saccone, Marcella Attimonelli
approaches to locate and quantify Human NumtS
Bmc Genomics, Elizabeth J Duncan, Megan J Wilson, James M Smith, Peter K Dearden, James M Smith, ...
Research article Evolutionary origin and genomic organisation of runt-domain containing genes in arthropods
Bmc Genomics, P C Sham, A Sw Chan, S S Cherny
Software OpenADAM: an open source genome-wide association data management system for Affymetrix SNP arrays
Insight into the sialome of the castor bean tick, Ixodes ricinus (2008)
Bmc Genomics, Jindřich Chmelař, Jennifer M Anderson, Jianbing Mu, Ryan C Jochim
Research article
Bmc Genomics, Erik Hjerde, Marit Sjo Lorentzen, Matthew Tg Holden, Kathy Seeger, Steinar Paulsen, ...
Research article The genome sequence of the fish pathogen Aliivibrio salmonicida strain LFI1238 shows extensive evidence of gene decay
Bmc Genomics, Michiel Wels, Tom Groot Kormelink, Michiel Kleerebezem
Research article An in silico analysis of T-box regulated genes and T-box evolution in prokaryotes, with emphasis on prediction of substrate specificity of transporters
Bmc Genomics, Norihiro Futamura, Yasushi Totoki, Atsushi Toyoda, Tomohiro Igasaki, Tokihiko Nanjo, ...
Research article Characterization of expressed sequence tags from a full-length enriched cDNA library of Cryptomeria japonica male strobili
in Escherichia coli and Streptomyces coelicolor (2008)
Bmc Genomics, Emma Laing, Khushwant Sidhu, Simon J Hubbard, Simon J Hubbard
Research article Predicted transcription factor binding sites as predictors of operons
Bmc Genomics, Siyuan Ren, Vladimir N Uversky, Zhengjun Chen, A Keith Dunker, Zoran Obradovic, ...
* Corresponding authors of their short lengths and degenerate sequences. A significant advance came when peptide-library methods were developed to identify sequences recognized by SH2 domains, which...
Bmc Genomics, Dominik Seelow, Heike Goehler, Katrin Hoffmann, Dominik Seelow, Heike Goehler, ...
This Provisional PDF corresponds to the article as it appeared upon acceptance. Fully formatted PDF and full text (HTML) versions will be made available soon. FragIdent- Automatic identification and...
Bmc Genomics, Thomas R Bürglin
Research article Evolution of hedgehog and hedgehog-related genes, their origin from Hog proteins in ancestral eukaryotes and discovery of a novel Hint motif
Proteomic profile of dormant Trichophyton Rubrum conidia (2008)
Bmc Genomics, Wenchuan Leng, Tao Liu, Rui Li, Jian Yang, Ong Wei, ...
Research article
Bmc Genomics, Li Jiang, Peter Sørensen, Christine Røntved, Lotte Vels, Klaus L Ingvartsen, ...
Research article Gene expression profiling of liver from dairy cows treated intra-mammary with lipopolysaccharide
Bmc Genomics, Matloob Qureshi, Alasdair Ivens
Software A software framework for microarray and gene expression object model (MAGE-OM) array design annotation
Bmc Genomics, Robert Kofler, Christian Schlötterer, Evita Luschützky, Tamas Lelley
Research article Survey of microsatellite clustering in eight fully sequenced species sheds light on the origin of compound microsatellites
Bmc Genomics, Priyanka P, Benedikt Brors, Prashant K Srivastava, Andrea Bott, Susanne Ne Boehn, ...
Research article Microarray-based approach identifies microRNAs and their target functional patterns in polycystic kidney disease
Bmc Genomics, Matthieu Legendre, Daniel Gautheret
Background: Differential polyadenylation is a widespread mechanism in higher eukaryotes producing mRNAs with different 3 ' ends in different contexts. This involves several alternative...
Bmc Genomics, Peter V, Tom Coenye, Tom Coenye, Peter Vandamme
Background: Ralstonia solanacearum is an important plant pathogen. The genome of R. solananearum GMI1000 is organised into two replicons (a 3.7-Mb chromosome and a 2.1-Mb megaplasmid) and this...
BioMed Central Open Access (2007)
Bmc Genomics, Lakshminarayan M Iyer, Vivek Anantharaman, L Aravind
Research article Ancient conserved domains shared by animal soluble guanylyl cyclases and bacterial signaling proteins
Bmc Genomics, Vigdis Nygaard, Anders Løl, Marit Holden, Mette Langaas, Håvard Rue, ...
Research article Effects of mRNA amplification on gene expression ratios in cDNA experiments estimated by analysis of variance
Bmc Genomics, Lakshminarayan M Iyer, Eugene V Koonin, L Aravind, L Aravind
Research article Classification and evolutionary history of the single-strand
* These authors contributed equally to the work. (2007)
Bmc Genomics, Susanne Hellebrand, Hans-jurgen Kreienkamp, H. Chica Schaller, Timo Wittenberger, Timo Wittenberger, ...
This 'Manuscript PDF ' corresponds to the article as it appeared upon acceptance. The fully-formatted PDF version will become available within a few days, from the URL listed below. GPR99,...
application for invasive cancer (2007)
Bmc Genomics, Lk Buehler, S Head, G Desoye, V Quaranta X
Defining signal thresholds in DNA microarrays: exemplary
Research article Pervasive properties of the genomic signature (2007)
Bmc Genomics, Robert W Jernigan, Robert W Jernigan, Robert H Baran, Robert H Baran
Background: The dinucleotide relative abundance profile can be regarded as a genomic signature because, despite diversity between species, it varies little between 50 kilobase or longer windows on a...
Bmc Genomics, Richard W Bond, Joseph A Hedrick, Jonathan Greene, Lawrence Benbow, Lynn Wang, ...
URL listed below.
Bmc Genomics, Mark R Segal, Andrew H Ahn, Praveen Anand, Yuanyuan Xiao, Yuanyuan Xiao, ...
This 'Manuscript PDF ' corresponds to the article as it appeared upon acceptance. The fully-formatted PDF version will become available within a few days, from the URL listed below....
computational analysis of SAGE data (2007)
Bmc Genomics, Peter Ruzanov, Steven J Jones, Donald L Riddle
Discovery of novel alternatively spliced C. elegans transcripts by
Bmc Genomics, Corinne Bresson, Celine Keime, Claudine Faure, Yann Letrillard
Research article Large-scale analysis by SAGE reveals new mechanisms of v-erbA oncogene action
Bmc Genomics, Reedik Mägi, Arne Pfeufer, Mari Nelis, Re Montpetit, Andres Metspalu, ...
Research article Evaluating the performance of commercial whole-genome marker sets for capturing common genetic variation
Bmc Genomics, Biomed Central, My-van La, Nicolas Crapoulet, Pascal Barbry, Didier Raoult, ...
Research article Comparative genomic analysis of Tropheryma whipplei strains reveals that diversity among clinical isolates is mainly related to the
Bmc Genomics, Elena Gogvadze, Crystel Barbisan, Marc-henri Lebrun, Anton Buzdin, Anton Buzdin
Research article Tripartite chimeric pseudogene from the genome of rice blast fungus Magnaporthe grisea suggests double template jumps during long interspersed nuclear element (LINE) reverse...
Genomic expression during human myelopoiesis (2007)
Bmc Genomics, Francesco Ferrari, Stefania Bortoluzzi, Dario Basso, Silvio Bicciato, Roberta Zini, ...
© 2007 Ferrari et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License
Software RScan: fast searching structural similarities for structured RNAs in large databases
Bmc Genomics, Kristin P Bennett, Charles Bergeron, Evrim Acar, Robert F Klees, Scott L V, ...
Research article Proteomics reveals multiple routes to the osteogenic phenotype in mesenchymal stem cells
Bmc Genomics, Michael G Mulligan, David A Slonina, Kimberly Stegmaier, Dolores Di Vizio, Paul R Martinez, ...
This Provisional PDF corresponds to the article as it appeared upon acceptance. Fully formatted PDF and full text (HTML) versions will be made available soon. Literature Lab: a method of automated...
Bmc Genomics, Emeric W Sevin, Angelique Cheron, Vincent M. Ulvé, Emeric W. Sevin, Angélique Chéron
This Provisional PDF corresponds to the article as it appeared upon acceptance. Fully formatted PDF and full text (HTML) versions will be made available soon. Identification of chromosomal...
interaction networks by phylogenetic profiling (2007)
Bmc Genomics, Anis Karimpour-fard, Lawrence Hunter, Ryan T Gill
Investigation of factors affecting prediction of protein-protein
Bmc Genomics, Elisa Marques, Simon De Givry, Paul Stothard, Brenda Murdoch, Zhiquan Wang, ...
Research article A high resolution radiation hybrid map of bovine chromosome 14 identifies scaffold rearrangement in the latest bovine assembly
Bmc Genomics, Camilla Scheele, Natasa Petrovic, Mohammad A Faghihi, Timo Lassmann, Katarina Fredriksson, ...
Research article The human PINK1 locus is regulated in vivo by a non-coding natural antisense RNA during modulation of mitochondrial function
Detection of RNA structures in porcine EST data and related mammals. BMC Genomics 8:316 (2007)
Bmc Genomics, Stefan E Seemann, Michael J Gilchrist, Ivo L Hofacker, Peter F Stadler, Jan Gorodkin, ...
Research article
Bmc Genomics, Yoshitaka Suetsugu, Hiroshi Minami, Michihiko Shimomura, Junko Narukawa, Kazuei Mita, ...
Research article End-sequencing and characterization of silkworm (Bombyx mori) bacterial artificial chromosome libraries
Bmc Genomics, Björn Voß, Gregor Gierga, Ilka M Axmann, Wolfgang R Hess, Ilka M Axmann, ...
Research article A motif-based search in bacterial genomes identifies the ortholog of the small RNA Yfr1 in all lineages of cyanobacteria
Background: Recent sequencing projects and the growth of sequence data banks enable oligopeptide patterns to be characterized on a genome or kingdom level. Several studies have focused on kingdom or...
Bmc Genomics, Maren Moe, Theo Meuwissen, Sigbjørn Lien, Christian Bendixen, Xuefei Wang, ...
Research article Gene expression profiles in testis of pigs with extreme high and low levels of androstenone
Bmc Genomics, Erik Arner, Ellen Kindlund, Daniel Nilsson, Fatima Farzana, Marcela Ferella, ...
Database of Trypanosoma cruzi repeated genes: 20 000 additional
Bmc Genomics, Adrie Jm Verhoeven
Research article Comparative genomics and experimental promoter analysis reveal functional liver-specific elements in mammalian hepatic lipase genes Diederik van Deursen1, Gert-Jan Botma1, Hans...
A generic approach to identify Transcription Factor-specific (2007)
Bmc Genomics, Lactobacillus Plantarum Wcfs, Christof Francke, Robert Kerkhoven, Michiel Wels
Research article
CCMP452 (West Atlantic) and NIES293 (West Pacific) strains (2007)
Bmc Genomics, Rose Ann Cattolico, Michael A Jacobs, Yang Zhou, Jean Chang, Melinda Duplessis, ...
Research article
How many human genes can be defined as housekeeping with
BioMed Central Open Access (2007)
Bmc Genomics, Yingfeng Luo, Xiaoli Xu, Zonghui Ding, Zhen Liu, Bing Zhang, ...
Research article Complete genome of Phenylobacterium zucineum – a novel facultative intracellular bacterium isolated from human erythroleukemia cell line K562
Bmc Genomics, Jennifer Owen, B Ann Hedley, Claus Svendsen, Jodie Wren, Martijs J Jonker, ...
Research article Transcriptome profiling of developmental and xenobiotic responses in a keystone soil animal, the oligochaete annelid Lumbricus rubellus
genome of Medicago truncatula (2007)
Bmc Genomics, Dariusz Grzebelus, Slawomir Lasota, Tomasz Gambin, Gregory Kucherov, Anna Gambin, ...
Diversity and structure of PIF/Harbinger-like elements in the
Bmc Genomics, Roxana Yockteng, Sylvain Marthey, Hélène Chiapello, Annie Gendrault, Michael E Hood, ...
Research article Expressed sequences tags of the anther smut fungus, Microbotryum violaceum, identify mating and pathogenicity genes
Exonization of active mouse L1s: a driver of transcriptome (2007)
Bmc Genomics, Tomasz Zemojtel, Tobias Penzkofer, Jörg Schultz, Thomas D, Richard Badge, ...
Research article
Bmc Genomics, Hiroaki Noda, Sawako Kawai, Yoko Koizumi, Kageaki Matsui, Qiang Zhang, ...
Research article Annotated ESTs from various tissues of the brown planthopper Nilaparvata lugens: A genomic resource for studying agricultural pests
Sequence analysis of an Archaeal virus isolated from a hypersaline (2007)
Bmc Genomics, Eulyn Pagaling, Richard D Haigh, William D Grant, Don A Cowan, Brian E Jones, ...
This is an Open Access article distributed under the terms of the Creative Commons Attribution License
Global comparative analysis of ESTs from the southern cattle tick, (2007)
Bmc Genomics, Rhipicephalus (boophilus Microplus, Minghua Wang, Felix D Guerrero, Geo Pertea, ...
© 2007 Wang et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License
A large-scale proteomic analysis of human embryonic stem cells (2007)
Bmc Genomics, Thomas C Schulz, Anna Maria Swistowska, Ying Liu, Andrzej Swistowski, Gail Palmarini, ...
© 2007 Schulz et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License
Bmc Genomics, Armigeres Subalbatus, Matthew T Aliota, Jeremy F Fuchs, George F Mayhew, Cheng-chen Chen, ...
Research article
Bmc Genomics, Shingo Suzuki, Naoaki Ono, Chikara Furusawa, Akiko Kashiwagi, Tetsuya Yomo
Research article Experimental optimization of probe length to increase the sequence specificity of high-density oligonucleotide microarrays
Bmc Genomics, John F Andersen, B Joseph Hinnebusch, David A Lucas, Thomas P Conrads, Timothy D Veenstra, ...
Research article An insight into the sialome of the oriental rat flea, Xenopsylla cheopis (Rots)
Bmc Genomics, Stefano Campanaro, Simone Picelli, Rossella Torregrossa, Laura Colluto, Monica Ceol, ...
Research article Genes involved in TGFβ1-driven epithelial-mesenchymal transition of renal epithelial cells are topologically related in the human interactome map
Effect of RNA quality on transcript intensity levels in microarray (2007)
Bmc Genomics, Tatiana Popova, Detlev Mennerich, Andreas Weith, Karsten Quast, Andreas Weith, ...
Research article
Bmc Genomics, Theo A Knijnenburg, Jean-marc Daran, Pascale Daran-lapujade, Jack T Pronk, ...
Research article Exploiting combinatorial cultivation conditions to infer transcriptional regulation
Bmc Genomics, Yiming Zhou, John Ferguson, Joseph T Chang, Yuval Kluger, Yuval Kluger
Research article Inter- and intra-combinatorial regulation by transcription factors and microRNAs
Bmc Genomics, Joanna Kiraga, Pawel Mackiewicz, Dorota Mackiewicz, Maria Kowalczuk, Przemysław Biecek, ...
Research article The relationships between the isoelectric point and: length of proteins, taxonomy and ecology of organisms
Bmc Genomics, Longlong Yang, Bruce C Allen, Russell S Thomas
Software BMDExpress: a software tool for the benchmark dose analyses of genomic data
BioMed Central Research article Structural and functional insights into Mimivirus ORFans (2007)
Bmc Genomics, Harpreet Kaur Saini, Daniel Fischer
which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Background: Mimivirus isolated from A. polyphaga is the largest virus...
Intercenter reliability and validity of the rhesus macaque GeneChip (2007)
Bmc Genomics, Fenghai Duan, Eliot R Spindel, Yu-hua Li, Robert B Norgren, Robert B Norgren
Research article
Bmc Genomics, Raj Chari, Kim M Lonergan, Raymond T Ng, Calum Macaulay, Wan L Lam, ...
Research article Effect of active smoking on the human bronchial epithelium transcriptome
Bmc Genomics, Joy X Lei, Hui Shen, Boleslaw Lach, P Roy Walker, Joel Martin, ...
Novel subtractive transcription-based amplification of mRNA (STAR) method and its application in search of rare and differentially expressed genes in AD brains
Research article Comparative genomics of vertebrate Fox cluster loci (2006)
Bmc Genomics, Karl R Wotton, Sebastian M Shimeld, Karl R Wotton, Sebastian M Shimeld
Background: Vertebrate genomes contain numerous duplicate genes, many of which are organised into paralagous regions indicating duplication of linked groups of genes. Comparison of genomic...
Bmc Genomics, Adam M Gustafson, Evan S Snitkin, Stephen Cj Parker, Charles Delisi, Simon Kasif, ...
Research article Towards the identification of essential genes using targeted genome sequencing and comparative analysis
Bmc Genomics, Charu G Kumar, Joshua H Larson, Mark R B, Harris A Lewin
Research article Discovery and characterization of 91 novel transcripts expressed in cattle placenta
MicroArray Facility: a laboratory information management system (2006)
Bmc Genomics, Paul Honoré, Samuel Granjeaud, Rebecca Tagett, Stéphane Deraco, Emmanuel Beaudoing, ...
Software
comparative analyses with Arabidopsis (2006)
Bmc Genomics, Matthew A Campbell, Brian J Haas, John P Hamilton, Stephen M Mount, C Robin Buell
Comprehensive analysis of alternative splicing in rice and
Bmc Genomics, Aurélien De Reyniès, Daniela Geromin, Jean-michel Cayuela, Fabien Petel, François Sigaux, ...
Research article Comparison of the latest commercial short and long oligonucleotide microarray technologies
cross-species primers among 1147 mammalian primer pairs (2006)
Bmc Genomics, Donna Je Housley, Zachary A Zalewski, Stephanie E Beckett, Patrick J Venta, Patrick J Venta
Design factors that influence PCR amplification success of
Bmc Genomics, Takeshi Ara, Fabrice Lopez, William Ritchie, Daniel Gautheret, Daniel Gautheret
Conservation of alternative polyadenylation patterns in
information content of metabolomics data (2006)
Bmc Genomics, Huub Cj Hoefsloot, Johan A Westerhuis
Centering, scaling, and transformations: improving the biological
Bmc Genomics, Wei Zhang, Li Li, Xia Li, Wei Jiang, Jianmin Huo, ...
Research article Unravelling the hidden heterogeneities of diffuse large B-cell lymphoma based on coupled two-way clustering
Olaf Brockmann-Gretza and Jörn Kalinowski* Open Access (2006)
Research article Global gene expression during stringent response in Corynebacterium glutamicum in presence and absence of the rel gene encoding (p)ppGpp synthase
Research article Phylogenomic analysis of the GIY-YIG nuclease superfamily (2006)
Bmc Genomics, Stanislaw Dunin-horkawicz, Marcin Feder, Janusz M Bujnicki
Background: The GIY-YIG domain was initially identified in homing endonucleases and later in other selfish mobile genetic elements (including restriction enzymes and non-LTR retrotransposons) and in...
Bmc Genomics, Kazuyoshi Hosomichi, Takashi Shiina, Shingo Suzuki, Masayuki Tanaka, Sayoko Shimizu, ...
Research article The major histocompatibility complex (Mhc) class IIB region has greater genomic structural flexibility and diversity in the quail than the chicken
Coding limits on the number of transcription factors (2006)
Bmc Genomics, Shalev Itzkovitz, Tsvi Tlusty, Uri Alon
This is an Open Access article distributed under the terms of the Creative Commons Attribution License
Bmc Genomics, Raj Chari, William W Lockwood, Bradley P Coe, Anna Chu, Devon Macey, ...
This is an Open Access article distributed under the terms of the Creative Commons Attribution License
Bmc Genomics, Youping Deng, Yinghua Dong, Venkata Thodima, Rollie J Clem, Lorena Passarelli, ...
Research article Analysis and functional annotation of expressed sequence tags from the fall armyworm Spodoptera frugiperda
Evolution of Tubulin Gene Arrays in Trypanosomatid parasites: (2006)
Bmc Genomics, Andrew P Jackson, Sue Vaughan, Keith Gull, Open Access
genomic restructuring in Leishmania
Bmc Genomics, Patrizia Lastella, Nicoletta Concetta Surdo, Nicoletta Resta, Ginevra Guanti
Research article In silico and in vivo splicing analysis of MLH1 and MSH2 missense mutations shows exon- and tissue-specific effects
Bmc Genomics, Anke Franzke, Robert Geffers, J Katrin Hunger, Susanne Pförtner, Wenji Piao, ...
Research article Identification of novel regulators in T-cell differentiation of aplastic anemia patients
Bmc Genomics, Jari J Rautio, Bart A Smit, Marilyn Wiebe, Merja Penttilä
Research article Transcriptional monitoring of steady state and effects of anaerobic phases in chemostat cultures of the filamentous fungus Trichoderma reesei
Bmc Genomics, Fabian Kilpert, Lars Podsiadlowski
Research article The complete mitochondrial genome of the common sea slater, Ligia oceanica (Crustacea, Isopoda) bears a novel gene order and unusual control region features
Bmc Genomics, Carmela Gissi, Graziano Pesole, Elena Cattaneo, Marzia Tartari, Open Access, ...
Research article Huntingtin gene evolution in Chordata and its peculiar features in the ascidian Ciona genus
Bmc Genomics, Paul Bowyer, Marcin Fraczek, David W Denning, David W Denning
Research article Comparative genomics of fungal allergens and epitopes shows widespread distribution of closely related allergen and epitope orthologues
Bmc Genomics, Kirsty Jensen, Richard Talbot, Edith Paxton, David Waddington, David Waddington, ...
Research article Development and validation of a bovine macrophage specific cDNA microarray
Bmc Genomics, Mamoru Kato, Akihiro Sekine, Yozo Ohnishi, Toshihiro Tanaka, Yusuke Nakamura, ...
Research article Linkage disequilibrium of evolutionarily conserved regions in the human genome
Finding function: evaluation methods for functional genomic data (2006)
Bmc Genomics, Chad L Myers, Daniel R Barrett, Matthew A Hibbs, Curtis Huttenhower, Olga G Troyanskaya, ...
© 2006 Myers et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License
Bmc Genomics, Robert W Li, Congjun Li, Open Access
Research article Butyrate induces profound changes in gene expression related to multiple signal pathways in bovine kidney epithelial cells
Research article Protein domains and architectural innovation in plant-associated (2005)
Bmc Genomics, David J Studholme, J Allan Downie, Gail M Preston
This is an Open Access article distributed under the terms of the Creative Commons Attribution License
Bmc Genomics, H Stanley Kim, Mark A Schell, Yan Yu, Ricky L Ulrich, Saul H Sarria, ...
Research article Bacterial genome adaptation to niches: Divergence of the potential virulence genes in three Burkholderia species of different survival strategies
Bmc Genomics, David J Studholme, J. Allan Downie, Gail M Preston, David J. Studholme, J. Allan Downie, ...
This Provisional PDF corresponds to the article as it appeared upon acceptance. The fully-formatted
Research article Protein domains and architectural innovation in plant-associated (2005)
Bmc Genomics, David J Studholme, J Allan Downie, Gail M Preston
This is an Open Access article distributed under the terms of the Creative Commons Attribution License
Bmc Genomics, Laurelea Donaldson, Tony Vuocolo, Christian Gray, Ylva Str, Antonio Reverter, ...
© 2005 Donaldson et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License
Bmc Genomics, Nigel J Saunders, Prawit Boonmee, John F Peden, John F Peden, ...
Research article Inter-species horizontal transfer resulting in core-genome and niche-adaptive variation within Helicobacter pylori
Bmc Genomics, Biomed Central, Yvan Charbonnier, Brian Gettler, Patrice François, Manuela Bento, ...
Research article A generic approach for the design of whole-genome oligoarrays, validated for genomotyping, deletion mapping and gene expression
Bmc Genomics, David Petersen, Gvr Ch, Joel Geoghegan, Joanne Hilburn, Jonathon Paarlberg, ...
Research article Three microarray platforms: an analysis of their concordance in profiling gene expression
Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing (2005)
Bmc Genomics, Rasmus Wernersson, Mikkel H Schierup, Frank G Jørgensen, Jan Gorodkin, Frank Panitz, ...
Research article
Signature proteins that are distinctive of alpha proteobacteria (2005)
Bmc Genomics, Pinay Kainth, Radhey S Gupta
which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Background: The alpha (α) proteobacteria, a very large and diverse group,...
Bmc Genomics, Elisa Giuntini, Alessio Mengoni, Duccio Cavalieri, Nadia Aubin-horth, Christian R L, ...
Research article Large-scale genetic variation of the symbiosis-required megaplasmid pSymA revealed by comparative genomic analysis of Sinorhizobium meliloti natural strains
Bmc Genomics, Anne-sophie Carpentier, Bruno Torrésani, Alex Grossmann, Alain Hénaut, Alex Grossmann, ...
Research article Decoding the nucleoid organisation of Bacillus subtilis and
Transcribed Tc1-like transposons in salmonid fish (2005)
Bmc Genomics, Aleksei Krasnov, Heikki Koskinen, Sergey Afanasyev, Hannu Mölsä, Hannu Mölsä
This is an Open Access article distributed under the terms of the Creative Commons Attribution License
Bmc Genomics, Raghu Prasad, Rao Metpally, Ramanathan Sowdhamini, Ramanathan Sowdhamini
Research article Cross genome phylogenetic analysis of human and Drosophila G protein-coupled receptors: application to functional annotation of orphan receptors
Bmc Genomics, Ali N Dana, Young S Hong, Marcia K Kern, Maureen E Hillenmeyer, Brent W Harker, ...
Research article Gene expression patterns associated with blood-feeding in the malaria mosquito Anopheles gambiae
Bmc Genomics, Kathryn L Hunkapiller, Julie Blake, Frances Chan, Carolyn Gonzalez, Lu Zhang, ...
Research article Large scale real-time PCR validation on gene expression measurements from two commercial long-oligonucleotide microarrays
The zebrafish progranulin gene family and antisense transcripts (2005)
Bmc Genomics, Benoît Cadieux, Babykumari P Chitramuthu, David Baranowski, Hugh Pj Bennett
This is an Open Access article distributed under the terms of the Creative Commons Attribution License
BioMed Central Research article SNiPer: Improved SNP genotype calling for Affymetrix 10K (2005)
Bmc Genomics, Genechip Microarray Data, Matthew J Huentelman, David W Craig, Albert D Shieh, Jason J Corneveaux, ...
This is an Open Access article distributed under the terms of the Creative Commons Attribution License
Bmc Genomics, Bart Mg Smits, Victor Guryev, Dimphy Zeegers, Dirk Wedekind, Hans J Hedrich
Research article Efficient single nucleotide polymorphism discovery in laboratory rat strains using wild rat-derived SNP candidates
crustacean Squilla mantis (2005)
Bmc Genomics, Charles E Cook, Charles E Cook
Research article The complete mitochondrial genome of the stomatopod
Bmc Genomics, Willem Albert Rensink, An Lee, Jia Liu, Stacy Iobst, Shu Ouyang, ...
Research article Comparative analyses of six solanaceous transcriptomes reveal a high degree of sequence conservation and species-specific transcripts
Bioinformatic mapping of AlkB homology domains in viruses (2005)
Bmc Genomics, Marit S Bratlie, Finn Drabløs, Marit S Bratlie, Finn Drabløs
which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Background: AlkB-like proteins are members of the 2-oxoglutarate- and...
Bmc Genomics, Jing-ke Weng, Milos Tanurdzic
Research article Functional analysis and comparative genomics of expressed sequence tags from the lycophyte Selaginella moellendorffii
Bmc Genomics, Mario Van Poucke, David Bourry, François Piumi, Marc Mattheeuws, Alex Van Zeveren, ...
Research article Comparative analysis of a BAC contig of porcine chromosome 13q31-q32 and human chromosome 3q21-q22
Bmc Genomics, Rosanna Weksberg, Simon Hughes, Laura Moldovan, Anne S Bassett, Jeremy A Squire
Research article A method for accurate detection of genomic microdeletions using real-time quantitative PCR
homologues in prokaryotes (2004)
Diversity in domain architectures of Ser/Thr kinases and their
Feature Extraction and Signal Processing for . . . (2004)
Fabrice Lopez, Bmc Genomics, Jacques Rougemont, Aude Bourgeois, Laurence Loi, Francois Bertucci, ...
Background: High-density DNA microarrays require automatic feature extraction methodologies and softwares. These can be a potential source of non-reproducibility of gene expression measurements....
Bmc Genomics, Yi Zhang, Eric D Green, Nisc Comparative, Sequencing Program, ...
Background: The elastin gene (ELN) is implicated as a factor in both supravalvular aortic stenosis (SVAS) and Williams Beuren Syndrome (WBS), two diseases involving pronounced complications in mental...
The FU Gene and Its Possible Protein Isoforms (2004)
Bmc Genomics, David B Everman, Regina C Betz, Markus M Nothen, Charles E Schwartz, Peter G Zaphiropoulos, ...
Background: FU is the human homologue of the Drosophila gene fused whose product Fused is a positive regulator of the transcription factor Cubitus interruptus (Ci). Thus, FU may act as a regulator of...
The Retinome - Defining a Reference . . . (2004)
Bmc Genomics, Heidi L. Schulz, Heidi L. Schulz, Thomas Goetz, Thomas Goetz, ...
Background. The mammalian retina is a valuable model system to study neuronal biology in health and disease. To obtain insight into intrinsic processes of the retina, great efforts are directed...
Bmc Genomics, Timothy J Sendera, All Lockner, Tamma Kaysser-kranich, George Watts, George Watts, ...
Research article Performance evaluation of commercial short-oligonucleotide microarrays and the impact of noise in making cross-platform correlations
Bmc Genomics, Warren M Snelling, Mathieu Gautier, John W Keele, Timothy Pl Smith
Research article Integrating linkage and radiation hybrid mapping data for bovine chromosome 15
Bmc Genomics, Stein Aerts, Gert Thijs, Michal Dabrowski, Yves Moreau, Bart De
Research article Comprehensive analysis of the base composition around the transcription start site in Metazoa
Bmc Genomics, Frédérique Pitel, Behnam Abasht, Mireille Morisson, Suzanne Bardes, Denis Milan, ...
Research article A high-resolution radiation hybrid map of chicken chromosome 5 and comparison with human chromosomes
Bmc Genomics, Anna Henricson, Erik Ll Sonnhammer, David L Baillie, Ana Vaz Gomes
Research article Functional characterization in Caenorhabditis elegans of transmembrane worm-human orthologs
Bmc Genomics, Stefan Taudien, Petra Galgoczy, Klaus Huse, Kathrin Reichwald, Markus Schilhabel, ...
Research article Polymorphic segmental duplications at 8p23.1 challenge the determination of individual defensin gene repertoires and the assembly of a contiguous human reference sequence
Research article The over-representation of binary DNA tracts in seven sequenced chromosomes
C-type lectin-like domains in Fugu rubripes (2004)
Bmc Genomics, Alex N Zelensky, Jill E Gready, Alex N Zelensky, Jill E Gready
© 2004 Zelensky and Gready; licensee BioMed Central Ltd. This is an open-access article distributed under the terms of the Creative Commons Attribution License
Bmc Genomics, Justin E Paschall, Marjorie F Oleksiak, Jeffrey D Vanwye, Jennifer L Roach, J Andrew Whitehead, ...
Research article FunnyBase: a systems level functional annotation of Fundulus ESTs for the analysis of gene expression
Bmc Genomics, John J Hutton, Anil G Jegga, Sue Kong, Ashima Gupta, Catherine Ebert, ...
Research article Microarray and comparative genomics-based identification of genes and gene regulatory regions of the mouse immune system
Bmc Genomics, Cong-yi Wang, Ping Yang, Jing-da Shi, Sharad Purohit, Dehuang Guo, ...
Research article Molecular cloning and characterization of the mouse Acdp gene family
The rehydration transcriptome of the desiccation-tolerant (2004)
Bmc Genomics, Melvin J Oliver, Scot E Dowd, Joaquin Zaragoza, Steven A Mauget, Paxton R Payton, ...
Research article
Bmc Genomics, Yue Zhou, Jeffrey W Bizzaro, Kenneth A Marx
Research article Homopolymer tract length dependent enrichments in functional regions of 27 eukaryotes and their novel dependence on the organism DNA (G+C) % composition
Bmc Genomics, Magali Irla, Denis Puthier, Samuel Granjeaud, Murielle Saade, Geneviève Victorero, ...
Research article Genomic organization and the tissue distribution of alternatively spliced isoforms of the mouse Spatial gene
Enhancer trapping in zebrafish using the Sleeping Beauty transposon (2004)
Bmc Genomics, Darius Balciunas, Ann E Davidson, Sridhar Sivasubbu, Spencer B Hermanson, Zachary Welle, ...
© 2004 Balciunas et al; licensee BioMed Central Ltd. This is an open-access article distributed under the terms of the Creative Commons Attribution License
BioMed Central Software POSA: Perl Objects for DNA Sequencing Data Analysis (2004)
Bmc Genomics, Jan A Aerts, Bart J Jungerius, Martien Am Groenen
© 2004 Aerts et al; licensee BioMed Central Ltd. This is an open-access article distributed under the terms of the Creative Commons Attribution License
Bmc Genomics, Hyeong Jun An, Doheon Lee, Kwang Hyung Lee, Jonghwa Bhak
Research article The association of Alu repeats with the generation of potential AU-rich elements (ARE) at 3 ' untranslated regions.
Extreme conservation of noncoding DNA near HoxD complex of (2004)
Bmc Genomics, Chilaka Sabarinadh, Subbaya Subramanian, Anshuman Tripathi, Anshuman Tripathi, Rakesh K Mishra
Research article
Genomic structure and cloning of two transcript isoforms of human (2004)
Bmc Genomics, Maria-athina Milona, Julie E Gough, Alasdair J Edgar
Research article
Bmc Genomics, Motoyuki Kunii, Masanori K, Hironori Nagano, Ichiro Uyeda
Research article Reconstruction of putative DNA virus from endogenous rice tungro bacilliform virus-like sequences in the rice genome: implications for integration and evolution
Bmc Genomics, Rachel Lyne, Gavin Burns, Juan Mata, Chris J Penkett, Gabriella Rustici, ...
Research article Whole-genome microarrays of fission yeast: characteristics, accuracy, reproducibility, and processing of array data
BioMed Central Open Access (2003)
Research article Application of comparative genomics in the identification and analysis of novel families of membrane-associated receptors in bacteria Vivek Anantharaman and L Aravind*
Bmc Genomics, Michal A Kurowski, Ashok S Bhagwat, Grzegorz Papaj, Janusz M Bujnicki
phylogenomicsbioinformaticsdealkylationdemethylationdioxygenases Background: Combination of biochemical and bioinformatic analyses led to the discovery of oxidative demethylation – a novel DNA...
Bmc Genomics, Katleen De Preter, Filip Pattyn, Geert Berx, Kristin Strumane, Björn Menten, ...
Research article Combined subtractive cDNA cloning and array CGH: an efficient approach for identification of overexpressed genes in DNA amplicons
Differential representation of sunflower ESTs in enriched (2003)
Bmc Genomics, Paula Fernández, Norma Paniego, Sergio Lew, Ruth A Heinz, Sergio Lew, ...
Research article
exploring new tools for comparative genome analyses (2002)
Bmc Genomics, Olga Zhaxybayeva, J Peter Gogarten
Background: Horizontal gene transfer (HGT) played an important role in shaping microbial genomes. In addition to genes under sporadic selection, HGT also affects housekeeping genes and those involved...
Characterization of BTBD1 and BTBD2, two similar (2002)
Bmc Genomics, Topoisomerase I, Lixin Xu, Lihong Yang, Keiko Hashimoto, Melvin Anderson, ...
BTB-domain-containing Kelch-like proteins that interact with
x Efficacy of SSH PCR in isolating differentially expressed genes (2002)
Bmc Genomics, Wan Ji, Matthew B Wright, Li Cai, Angel Flament, Klaus Lindpaintner
Background: Suppression Subtractive Hybridization PCR (SSH PCR) is a sophisticated cDNA subtraction method to enrich and isolate differentially expressed genes. Despite its popularity, the method has...
Open Access Cross-species hybridisation of pig RNA to human nylon microarrays (2002)
Bmc Genomics, De Moody, Z Zou, L Mcintyre
© 2002 Moody et al; licensee BioMed Central Ltd. This article is published in Open Access: verbatim copying and redistribution of this article are permitted in all media for any purpose, provided...
© 2002 Eliáš et al; licensee BioMed Central Ltd. Verbatim copying and redistribution of this article are permitted in any medium for any purpose, provided this notice is preserved along with the...
Bmc Genomics, James Pannucci, Richard T Okinaka, Erin Williams, Robert Sabin, Lawrence O Ticknor, ...
Research article DNA sequence conservation between the Bacillus anthracis pXO2 plasmid and genomic sequence from closely related bacteria
Bmc Genomics, Julie A Besco, Adrienne Frostholm, Magdalena C Popesco, Hm Burghes, Andrej Rotter
© 2001 Besco et al; licensee BioMed Central Ltd. Verbatim copying and redistribution of this article are permitted in any medium for any non-commercial purpose, provided this notice is preserved...
Bmc Genomics, Tiane Dai, Yanira Vera, Eduardo C Salido, Pauline H Yen, Pauline H Yen
Research article Characterization of the mouse Dazap1 gene encoding an RNAbinding protein that interacts with infertility factors DAZ and DAZL