TargetRNA: a tool for predicting targets of small RNA action in bacteria (2008)
Many small RNA (sRNA) genes in bacteria act as posttranscriptional regulators of target messenger RNAs. Here, we present TargetRNA, a web tool for predicting mRNA targets of sRNA action in bacteria....
Target prediction for small, noncoding RNAs in bacteria (2006)
Tjaden, Brian, Goodwin, Sarah S., Opdyke, Jason A., Guillier, Maude, Fu, Daniel X., Gottesman, Susan, ...
Many small, noncoding RNAs in bacteria act as post-transcriptional regulators by basepairing with target mRNAs. While the number of characterized small RNAs (sRNAs) has steadily increased, only a...
An approach for clustering gene expression data with error information (2006)
Abstract Background Clustering of gene expression patterns is a well-studied technique for elucidating trends across large numbers of transcripts and for identifying likely co-regulated genes. Even...
Target prediction for small, noncoding RNAs in bacteria (2006)
Tjaden, Brian, Goodwin, Sarah S., Opdyke, Jason A., Guillier, Maude, Fu, Daniel X., Gottesman, Susan, ...
Many small, noncoding RNAs in bacteria act as post-transcriptional regulators by basepairing with target mRNAs. While the number of characterized small RNAs (sRNAs) has steadily increased, only a...
Tjaden, Brian, Haynor, David R., Stolyar, Sergey, Rosenow, Carsten, Kolker, Eugene
Microarrays traditionally have been used to assay the transcript expression of coding regions of genes. Here, we use Escherichia coli oligonucleotide microarrays to assay transcript expression of...
Transcriptome analysis of Escherichia coli using high-density oligonucleotide probe arrays (2002)
Tjaden, Brian, Saxena, Rini Mukherjee, Stolyar, Sergey, Haynor, David R., Kolker, Eugene, Rosenow, Carsten
Microarrays traditionally have been used to analyze the expression behavior of large numbers of coding transcripts. Here we present a comprehensive approach for high‐throughput transcript...
Transcriptome analysis of Escherichia coli using high-density oligonucleotide probe arrays
Tjaden, Brian, Saxena, Rini Mukherjee, Stolyar, Sergey, Haynor, David R., Kolker, Eugene, Rosenow, Carsten
Microarrays traditionally have been used to analyze the expression behavior of large numbers of coding transcripts. Here we present a comprehensive approach for high-throughput transcript discovery...
Target prediction for small, noncoding RNAs in bacteria
Tjaden, Brian, Goodwin, Sarah S., Opdyke, Jason A., Guillier, Maude, Fu, Daniel X., Gottesman, Susan, ...
Many small, noncoding RNAs in bacteria act as post-transcriptional regulators by basepairing with target mRNAs. While the number of characterized small RNAs (sRNAs) has steadily increased, only a...
Transcriptome analysis of Escherichia coli using high-density oligonucleotide probe arrays
Tjaden, Brian, Saxena, Rini Mukherjee, Stolyar, Sergey, Haynor, David R., Kolker, Eugene, Rosenow, Carsten
Microarrays traditionally have been used to analyze the expression behavior of large numbers of coding transcripts. Here we present a comprehensive approach for high-throughput transcript discovery...
Target prediction for small, noncoding RNAs in bacteria
Tjaden, Brian, Goodwin, Sarah S., Opdyke, Jason A., Guillier, Maude, Fu, Daniel X., Gottesman, Susan, ...
Many small, noncoding RNAs in bacteria act as post-transcriptional regulators by basepairing with target mRNAs. While the number of characterized small RNAs (sRNAs) has steadily increased, only a...
Mellin, J. R., Goswami, Sulip, Grogan, Susan, Tjaden, Brian, Genco, Caroline A.
Iron is both essential for bacterial growth and toxic at higher concentrations; thus, iron homeostasis is tightly regulated. In Neisseria meningitidis the majority of iron-responsive gene regulation...
TargetRNA: a tool for predicting targets of small RNA action in bacteria
Many small RNA (sRNA) genes in bacteria act as posttranscriptional regulators of target messenger RNAs. Here, we present TargetRNA, a web tool for predicting mRNA targets of sRNA action in bacteria....
Small non-coding RNAs in Streptomyces coelicolor
Swiercz, Julia P., Bobek, Jan, Haiser, Henry J., Di Berardo, Christina, Tjaden, Brian, ...
In bacteria, small RNAs (sRNAs) make important regulatory contributions to an ever increasing number of cellular processes. To expand the repertoire of known sRNAs, we sought to identify novel sRNAs...