Britta Mersch, Abteilung Molekulare Biophysik, Tobias Glasmachers, Peter Meinicke, Christian Igel
Received (to be inserted
Mersch, Britta, Sela, Noa, Ast, Gil, Suhai, Sandor
Background: Transposed elements (TEs) are known to affect transcriptomes, because either new exons are generated from intronic transposed elements (this is called exonization), or the element inserts...
Sela, Noa, Mersch, Britta, Gal-Mark, Nurit, Lev-Maor, Galit, Ast, Gil
Background: Transposed elements (TEs) have a substantial impact on mammalian evolution and are involved in numerous genetic diseases. We compared the impact of TEs on the human transcriptome and the...
Automatic detection of exonic splicing enhancers (ESEs) using SVMs (2008)
Mersch, Britta, Gepperth, Alexander, Suhai, Sándor, Hotz-Wagenblatt, Agnes
Abstract Background Exonic splicing enhancers (ESEs) activate nearby splice sites and promote the inclusion (vs. exclusion) of exons in which they reside, while being a binding site for SR proteins....
Christian Igel, Tobias Glasmachers, Britta Mersch, Nico Pfeifer, Peter Meinicke
Biological data mining using kernel methods can be improved by a task-specific choice of the kernel function. Oligo kernels for genomic sequence analysis have proven to have a high discriminative...
Mersch, Britta, Sela, Noa, Ast, Gil, Suhai, Sándor, Hotz-Wagenblatt, Agnes
Abstract Background Transposed elements (TEs) are known to affect transcriptomes, because either new exons are generated from intronic transposed elements (this is called exonization ), or the...
Sela, Noa, Mersch, Britta, Gal-Mark, Nurit, Lev-Maor, Galit, Hotz-Wagenblatt, Agnes, Ast, Gil
Abstract Background Transposed elements (TEs) have a substantial impact on mammalian evolution and are involved in numerous genetic diseases. We compared the impact of TEs on the human transcriptome...
Sela, Noa, Mersch, Britta, Gal-Mark, Nurit, Lev-Maor, Galit, Hotz-Wagenblatt, Agnes, Ast, Gil
Analysis of transposed elements in the human and mouse genomes reveals many effects on the transcriptomes, including a higher level of exonization of Alu elements than other elements.