Scholarly Communication and the Web (2009)
This chapter draws on insights from the development of myExperiment to illustrate changes in research practice enabled by new digital methods or ‘Science 2.0’
Contents lists available at ScienceDirect Journal of Biomedical Informatics (2009)
journal homepage: www.elsevier.com/locate/yjbin
Lessons from myExperiment: Research Objects for Data Intensive Research (2009)
De Roure, David, Goble, Carole
The myExperiment Virtual Research Environment has successfully adopted a Web 2.0 approach in delivering a social web site where scientists can discover, publish and curate scientific workflows and...
Lessons from myExperiment: Two insights into emerging e-Research practice (2009)
De Roure, David, Goble, Carole
The design of the myExperiment social web site for scientists adopted the Web 2.0 design principles, investigating the question: does Web 2.0 work for scientists? Two years later the site has...
De Roure, David, Goble, Carole
myExperiment is a social web site for the born-digital items arising in contemporary research practice, in particular scientific workflows and Research Objects. myExperiment can be seen from many...
The myExperiment Open Repository for Scientific Workflows (2009)
Aleksejevs, Sergejs, Bechhofer, Sean, Bhagat, Jiten, Cruickshank, Don, De Roure, David, Goble, Carole, ...
4th International Conference on Open Repositories
Towards Open Science: The myExperiment approach (2009)
De Roure, David, Goble, Carole, Aleksejevs, Sergejs, Bechhofer, Sean, Bhagat, Jiten, Cruickshank, Don, ...
By making research content more reusable, and providing a social infrastructure which facilitates sharing, the human aspects of the scholarly knowledge cycle may be accelerated and...
Benchmarking Workflow Discovery: A Case Study From Bioinformatics (2009)
Goderis, Antoon, Fisher, Paul, Gibson, Andrew, Tanoh, Franck, Wolstencroft, Katy, De Roure, David, ...
Automation in science is increasingly marked by the use of workflow technology. The sharing of workflows through repositories supports the verifability, reproducibility and extensibility of...
Grid Metadata Management: requirements and architecture (2009)
Oscar Corcho, Pinar Alper, Paolo Missier, Sean Bechhofer, Carole Goble
Abstract — Metadata annotations of Grid resources can potentially be used for a number of purposes, including accurate resource allocation to jobs, discovery of services, and precise retrieval of...
Chris Wroe, Robert Stevens, Carole Goble
Received (to be inserted Revised by Publisher) The growing quantity and distribution of bioinformatics resources means that finding and utilizing them requires a great deal of expert...
De Roure, David, Goble, Carole, Stevens, Robert
In this paper we suggest that the full scientific potential of workflows will be achieved through mechanisms for sharing and collaboration, empowering scientists to spread their experimental...
Software Design for Empowering Scientists (2009)
De Roure, David, Goble, Carole
Scientific research is increasingly digital. Some activities, such as data analysis, search, and simulation, can be accelerated by letting scientists write workflows and scripts that automate routine...
The myExperiment Open Repository for Scientific Workflows (2009)
De Roure, David, Goble, Carole, Aleksejevs, Sergejs, Bechhofer, Sean, Bhagat, Jiten, Cruickshank, Don, ...
myExperiment is an open repository solution for the born-digital items arising in contemporary research practice, in particular scientific workflows and experiment plans. Launched in November 2007,...
Abstract The Grid: An Application of the Semantic Web (2008)
The Grid is an emerging platform to support on-demand “virtual organisations ” for coordinated resource sharing and problem solving on a global scale. The application thrust is large-scale...
Examining the Challenges of Scientific Workflows (2008)
A Gil, Ewa Deelman, Mark Ellisman, Thomas Fahringer, Geoffrey Fox, Carole Goble, ...
Workflows have recently emerged as a paradigm for representing and managing complex distributed scientific computations and therefore accelerate the pace of scientific progress. A recent workshop on...
myExperiment: Defining the Social Virtual Research Environment (2008)
De Roure, David, Goble, Carole, Bhagat, Jiten, Cruickshank, Don, Goderis, Antoon, Michaelides, Danius, ...
The myExperiment Virtual Research Environment supports the sharing of research objects used by scientists, such as scientific workflows. For researchers it is both a social infrastructure that...
Delivering Terminological Services (2008)
Terminologies or controlled vocabularies are important as they provide a framework within which communities can share knowledge. We describe three applications using a terminology represented in a...
Accelerating Time to Experiment – the myExperiment approach to Open Science (2008)
De Roure, David, Goble, Carole, Bhagat, Jiten
myExperiment has set out to provide the social software and services to support the scientific process, focusing on the ‘time to experiment’ phase of the scholarly knowledge cycle rather than the...
Taverna Workflows: Syntax and Semantics (2008)
Daniele Turi, Paolo Missier, Carole Goble, David De Roure
This paper presents the formal syntax and the operational semantics of Taverna, a workflow management system with a large user base among the e-Science community. Such formal foundation, which has so...
Requirements and Services (2008)
Paolo Missier, Pinar Alper, Óscar Corcho, Ian Dunlop, Carole Goble
Knowledge-intensive applications pose new challenges to metadata management, including distribution, access control, uniformity of access, and evolution in time. The authors identify general...
Building Large-scale, Service-Oriented Distributed Systems using Semantic Models (2008)
Carole Goble, Dean Kuo, Savas Parastatidis, Paul Watson
Service-oriented computing is a set of principles for building loosely-coupled distributed applications through the composition of autonomous services. For example, OGSA aims to define a core set of...
Re-evaluating the Grid: the social life of programs (2008)
De Roure, David, Goble, Carole
This paper discusses programming the Grid in the space between the Grid infrastructure and those using it to conduct scientific research. Rather than looking at any particular grid programming model,...
The Open Provenance Model (v1.01) (2008)
Moreau (Editor), Luc, Plale, Beth, Miles, Simon, Goble, Carole, Missier, Paolo, Barga, Roger, ...
In this paper, we introduce the Open Provenance Model, a model for provenance that is designed to meet the following requirements: (1) To allow provenance information to be exchanged between systems,...
Agile Management: Strategies for Developing a Social Networking Site for Scientists (2008)
Lin, Yuwei, Poschen, Meik, Procter, Rob, Voss, Alex, Goble, Carole, Bhagat, Jiten, ...
Discovering Scientific Workflows: The myExperiment Benchmarks (2008)
Goderis, Antoon, De Roure, David, Goble, Carole, Bhagat, Jiten, Cruickshank, Don, Fisher, Paul, ...
Automation in science is increasingly marked by the use of workflow technology. The sharing of workflows through publication mechanisms or repositories supports the verifiability, reproducibility and...
Discovering Scientific Workflows: The myExperiment Benchmarks (2008)
Goderis, Antoon, De Roure, David, Goble, Carole, Bhagat, Jiten, Cruickshank, Don, Fisher, Paul, ...
Automation in science is increasingly marked by the use of workflow technology. The sharing of workflows through publication mechanisms or repositories supports the verifiability, reproducibility and...
David De Roure, Carole Goble, Geoffrey Fox, Combechem Semantic Datagrid, Borromean Rings, Dan Atkins, ...
Application-to enhance discovery & learning © 2006 Open Grid Forum R&D to enhance technical and social dimensions of future CI systems 3
Seven Bottlenecks to Workflow Reuse and (2008)
Antoon Goderis, Ulrike Sattler, Phillip Lord, Carole Goble
Abstract. To date on-line processes (i.e. workflows) built in e-Science have been the result of collaborative team efforts. As more of these workflows are built, scientists start sharing and reusing...
Tom Oinn, Mark Greenwood, M. Nedim Alpdemir, Justin Ferris, Kevin Glover, Carole Goble, ...
a workflow environment for the life sciences
Chris Wroe, Carole Goble, Antoon Goderis, Phillip Lord, Simon Miles, Juri Papay, ...
services through discovery and reuse
Open Paper Augmenting the mobility of profoundly blind Web travellers (2008)
Simon Harper, Carole Goble, Robert Stevens
Use the word ‘accessibility ’ in the presence of any HCI 1 specialist and they will immediately think of creating open interfaces that can be accessed both visually and audibly. Further, mention...
The Data Playground – data driven workflow construction for the life sciences (2008)
Tom Oinn, Robert Stevens, Carole Goble
Workflow systems are used in eScience both to enact complex processes and to capture those processes to allow review, reuse and publication. Workflow design tools focus on directly assisting the user...
Phillip Lord, Pinar Alper, Chris Wroe, Carole Goble
light-weight architecture for user
Seven Bottlenecks to Workflow Reuse and (2008)
Antoon Goderis, Ulrike Sattler, Phillip Lord, Carole Goble
Abstract. To date on-line processes (i.e. workflows) built in e-Science have been the result of collaborative team efforts. As more of these workflows are built, scientists start sharing and reusing...
Nigel Shadbolt, Harith Alani, Steve Harris, Nick Gibbins, Yannis Kalfoglou, Bo Hu, ...
www.aktors.org
20 Taverna / my Grid: aligning a workflow system with the life sciences community (2008)
Tom Oinn, Peter Li, Douglas B. Kell, Carole Goble, Antoon Goderis, Mark Greenwood, ...
Bioinformatics is a discipline that uses computational and mathematical techniques to store, manage and analyse biological data in order to answer biological questions. Bioinformatics has over 850...
Grid Metadata Management: requirements and architecture (2008)
Oscar Corcho, Pinar Alper, Paolo Missier, Sean Bechhofer, Carole Goble
Abstract — Metadata annotations of Grid resources can potentially be used for a number of purposes, including accurate resource allocation to jobs, discovery of services, and precise retrieval of...
Luc Moreau, Bertram Ludäscher, Ilkay Altintas, Roger S. Barga, Shawn Bowers, George Chin, ...
The first Provenance Challenge was a community activity aiming at understanding the expressiveness of provenance representations and capabilities of provenance systems. To this end, a Functional...
Towards a Semantic Grid Architecture (2008)
The Semantic Grid is an extension of the current Grid in which information and services are given well defined and explicitly represented meaning, better enabling computers and people to work in...
Applying DLs to workflow reuse and repurposing (2008)
Antoon Goderis, Ulrike Sattler, Carole Goble
allowing a scientist to describe and enact their experimental processes in a structured, repeatable and verifiable way. The my Grid (www.mygrid.org.uk) workbench, a set of components to build...
Luc Moreau, Bertram Ludäscher, Ilkay Altintas, Roger S. Barga, Shawn Bowers, Steven Callahan, ...
The first Provenance Challenge was set up in order to provide a forum for the community to understand the capabilities of different provenance systems and the expressiveness of their provenance...
Abstract The Grid: An Application of the Semantic Web (2008)
The Grid is an emerging platform to support on-demand “virtual organisations ” for coordinated resource sharing and problem solving on a global scale. The application thrust is large-scale...
Thanks to Keith Decker who helped develop this tutorial and the following for contributions: (2008)
Brad Clement, Vic Lesser, Milind Tambe, Tom Wagner, Marie Desjardins, Karen Myers, ...
Multi-agent planning problems and techniques Planning for multiple agents Planning by multiple agents Coordinating before planning Coordinating plans of multiple agents Planning and coordinating...
Is e-Science the Semantic Web’s Friend? Or Just a FOAF? Or Just Tagging Along? (2008)
Abstract. e-Science [1,2] is scientific investigation performed through distributed global collaborations between scientists and their resources, and the computing infrastructure that enables this....
Peer Reviewed Paper, Simon Harper, Carole Goble, Stephen Pettitt
Our society is consistently told that the world is becoming increasingly connected, that the Internet can join physically disparate people by means of email, Web sites, and chatrooms, and that the...
Abstract The Grid: An Application of the Semantic Web (2008)
The Grid is an emerging platform to support on-demand “virtual organisations ” for coordinated resource sharing and problem solving on a global scale. The application thrust is large-scale...
An ActOn-based Semantic Information Service for EGEE (2008)
Wei Xing, Oscar Corcho, Carole Goble, Marios D. Dikaiakos
Abstract — We describe an information service that aggregates metadata available in hundreds of information sources of the EGEE Grid infrastructure. It uses an ontology-based information...
Sentinel: Universal Access to Ambient Devices (2008)
Simon Harper And, Simon Harper, Carole Goble, Stephen Pettitt
We suggest that with the advent of ambient devices, pervasive computing systems, mobile userdevices and the associated move towards accessing mobile information the HCI community has a perfect...
1 CLASSIFICATION BASED NAVIGATION AND RETRIEVAL FOR PICTURE ARCHIVES (2008)
Current state of the art in image retrieval and indexing doesn't meet all the needs of users of electronic picture collections. Content based retrieval provides little support for semantic...
Re-evaluating the Grid: the social life of programs (2008)
De Roure, David, Goble, Carole
This paper discusses programming the Grid in the space between the Grid infrastructure and those using it to conduct scientific research. Rather than looking at any particular grid programming model,...
Data curation + process curation=data integration + science (2008)
Goble, Carole, Stevens, Robert, Hull, Duncan, Wolstencroft, Katy, Lopez, Rodrigo
In bioinformatics, we are familiar with the idea of curated data as a prerequisite for data integration. We neglect, often to our cost, the curation and cataloguing of the processes that we use to...
The Open Provenance Model (v1.01) (2008)
Luc Moreau (editor, Beth Plale, Simon Miles, Carole Goble, Paolo Missier, Roger Barga, ...
In this paper, we introduce the Open Provenance Model, a model for provenance that is designed to meet the following requirements: (1) To allow provenance information to be exchanged between systems,...
Taverna Workflows: Syntax and Semantics (2007)
Missier, Paolo, Turi, Daniele, Goble, Carole, Oinn, Tom, De Roure, David
This paper presents the formal syntax and the operational semantics of Taverna, a workflow management system with a large user base among the e-Science community. Such formal foundation, which has so...
On the Use of Agents in g BioInformgtics Grid (2007)
Luc Moreau, Simon Miles, Carole Goble, Mark Greenwood, Vijay Dialani, Nedim Alpdemir, ...
Project site: Contact Author: Email: www.mygrid.org.uk
Conference Review Building ontologies in DAML + OIL (2007)
Chris Wroe, Sean Bechhofer, Phillip Lord, Alan Rector, Carole Goble, Robert Stevens, ...
In this article, we wish to present a style of building and delivering ontologies that we use in the Bioinformatics and Medical Informatics Groups
Luc Moreau, Simon Miles, Carole Goble, Mark Greenwood, Vijay Dialani, Matthew Addis, ...
, Kevin Glover 3, Chris Greenhalgh 3, Peter Li 5 Xiaojian Liu
Luc Moreau, Simon Miles, Carole Goble, Mark Greenwood, Vijay Dialani, Nedim Alpdemir, ...
, Kevin Glover 3, Chris Greenhalgh 3, Peter Li 5, Xiaojian Liu 1, Phillip Lord
Patricia G. Baker, Sean Bechhofer, Carole Goble, Stopford Building
The TAMBIS project aims to provide transparent access to disparate biological databases and analysis tools, enabling users to utilize a wide range of resources with the minimum of effort. A prototype...
Robert Stevens, Carole Goble, Sean Bechhofer, Gary Ng, Patricia Baker, Andy Brass
Biologists increasingly need to ask complex questions over the large number of data and analysis tools that are available on the Internet. To do this, the individual resources need to be made to work...
Robert Stevens, Carole Goble, Sean Bechhofer, Patricia Baker, Andy Brass
Biologists increasingly need to ask complex questions over the large quantity of data and analysis tools that now exist. To do this, the individual sources need to be made to work together. The...
Sagitus Solutions Limited (2007)
Robert Stevens, Carole Goble, Patricia Baker, Andy Brass
Motivation: This paper reports on a survey of bioinformatics tasks currently undertaken by working biologists. The aim was to find the range of tasks that need to be supported and the components...
Isabel F. Cruz, Vipul Kashyap, Stefan Decker, Rainer Eckstein, Olivier Bodenreider, Stéphane Bressan, ...
Proceedings of
The my Grid project: services, architecture and demonstrator (2007)
Carole Goble, Chris Wroe, Robert Stevens
my Grid is an e-Science research project developing open source high-level middleware to support in silico experiments in biology. In silico experiments use databases and computational analysis...
collection management, classification based retrieval, metadata management, and thesaurus construction, experienced through the STARCH project [3]. I will also refer to the promise Description Logics...
Danius Michaelides, Luc Moreau, Coordinators David, De Roure, Simon Cox, Geoffrey Fox, ...
Workshop
myExperiment: social networking for workflow-using e-scientists (2007)
Goble, Carole, De Roure, David
We present the Taverna workflow workbench and argue that scientific workflow environments need a rich ecosystem of tools that support the scientists’ experimental lifecycle. Workflows are...
myExperiment: social networking for workflow-using e-scientists (2007)
Goble, Carole, De Roure, David
We present the Taverna workflow workbench and argue that scientific workflow environments need a rich ecosystem of tools that support the scientists’ experimental lifecycle. Workflows are...
Using provenance to manage knowledge of In Silico experiments (2007)
Stevens, Robert, Zhao, Jun, Goble, Carole
This article offers a briefing in one of the knowledge management issues of in silico experimentation in bioinformatics. Recording of the provenance of an experiment—what was done; where, how and...
Six Principles of Software Design to Empower Scientists (2007)
De Roure, David, Goble, Carole
Scientific research is increasingly digital and some routine tasks - like data analysis, search and simulation - can be accelerated by enabling scientists to write workflows and scripts that automate...
myExperiment – A Web 2.0 Virtual Research Environment (2007)
De Roure, David, Goble, Carole
e-Science has given rise to new forms of digital object in the Virtual Research Environment which can usefully be shared amongst collaborating scientists to assist in generating new scientific...
myExperiment – A Web 2.0 Virtual Research Environment (2007)
De Roure, David, Goble, Carole
e-Science has given rise to new forms of digital object in the Virtual Research Environment which can usefully be shared amongst collaborating scientists to assist in generating new scientific...
myExperiment – A Web 2.0 Virtual Research Environment (2007)
De Roure, David, Goble, Carole
e-Science has given rise to new forms of digital object in the Virtual Research Environment which can usefully be shared amongst collaborating scientists to assist in generating new scientific...
Taverna Workflows: Syntax and Semantics (2007)
Missier, Paolo, Turi, Daniele, Goble, Carole, Oinn, Tom, De Roure, David
This paper presents the formal syntax and the operational semantics of Taverna, a workflow management system with a large user base among the e-Science community. Such formal foundation, which has so...
Designing the myExperiment Virtual Research Environment for the Social Sharing of Workflows (2007)
De Roure, David, Goble, Carole, Stevens, Robert
Many scientific workflow systems have been developed and are serving to benefit science. In this paper we look outside the workflow to consider the use of workflows within scientific practice, and we...
Metadata management in s-ogsa (2007)
Oscar Corcho, Pinar Alper, Paolo Missier, Sean Bechhofer, Carole Goble
Abstract. Metadata-intensive applications pose strong requirements for metadata management infrastructures, which need to deal with a large amount of distributed and dynamic metadata. Among the most...
An ActOn-based Semantic Information Service for EGEE (2007)
Wei Xing, Oscar Corcho, Carole Goble, Marios D. Dikaiakos, Wei Xing, Oscar Corcho, ...
We describe an information service that aggregates metadata available in hundreds of information sources of the EGEE Grid infrastructure. It uses an ontology-based information integration...
e-science and the semantic web: A symbiotic relationship (2006)
Goble, Carole, Corcho, Oscar, Alper, Pinar, De Roure, David
e-Science is scientific investigation performed through distributed global collaborations between scientists and their resources, and the computing infrastructure that enables this. Scientific...
Knowledge Discovery for in silico Experiments with Taverna (2006)
Goble, Carole, Wolstencroft, Katy, Goderis, Antoon, Hull, Duncan, Zhao, Jun, Alper, Pinar, ...
Knowledge Discovery for in silico Experiments with Taverna (2006)
Goble, Carole, Wolstencroft, Katy, Goderis, Antoon, Hull, Duncan, Zhao, Jun, Alper, Pinar, ...
e-science and the semantic web: A symbiotic relationship (2006)
Goble, Carole, Corcho, Oscar, Alper, Pinar, De Roure, David
e-Science is scientific investigation performed through distributed global collaborations between scientists and their resources, and the computing infrastructure that enables this. Scientific...
e-science and the semantic web: A symbiotic relationship (2006)
Goble, Carole, Corcho, Oscar, Alper, Pinar, De Roure, David
e-Science is scientific investigation performed through distributed global collaborations between scientists and their resources, and the computing infrastructure that enables this. Scientific...
Knowledge Discovery for in silico Experiments with Taverna (2006)
Goble, Carole, Wolstencroft, Katy, Goderis, Antoon, Hull, Duncan, Zhao, Jun, Alper, Pinar, ...
The Montagues and the Capulets (2006)
Two households, both alike in dignity, In fair Genomics, where we lay our scene, (One, comforted by its logic's rigour, Claims ontology for the realm of pure, The other, with blessed scientist's...
Building Ontologies in DAML + OIL (2006)
Robert Stevens, Chris Wroe, Sean Bechhofer, Phillip Lord, Alan Rector, Carole Goble
In this article we describe an approach to representing and building ontologies advocated by the Bioinformatics and Medical Informatics groups at the University of Manchester. The hand-crafting of...
The Low Down on e-Science and Grids for Biology (2006)
The Grid is touted as a next generation Internet/Web, designed primarily to support e-Science. I hope to shed some light on what the Grid is, its purpose, and its potential impact on scientific...
An Overview of S-OGSA: A Reference Semantic Grid Architecture (2006)
Oscar Corcho, Pinar Alper, Ioannis Kotsiopoulos, Paolo Missier, Sean Bechhofer, Carole Goble
The Grid's vision, of sharing diverse resources in a flexible, coordinated and secure manner through dynamic formation and disbanding of virtual communities, strongly depends on metadata....
Pinar Alper, Oscar Corcho, Ioannis Kotsiopoulos, Paolo Missier, Sean Bechhofer, Dean Kuo, ...
The Grid aims to support secure, flexible and coordinated resource sharing through providing a middleware platform for advanced distributing computing. Consequently, the Grid’s infrastructural...
Oscar Corcho, Pinar Alper, Ioannis Kotsiopoulos, Paolo Missier, Sean Bechhofer, Carole Goble
The Grid’s vision, of sharing diverse resources in a flexible, coordinated and secure manner through dynamic formation and disbanding of virtual communities, strongly depends on metadata....
Roure, e-Science and the Semantic Web: A Symbiotic Relationship (2006)
Carole Goble, Oscar Corcho, Pinar Alper, David De Roure
Abstract. e-Science is scientific investigation performed through distributed global collaborations between scientists and their resources, and the computing infrastructure that enables this....
Taverna: a tool for building and running workflows of services (2006)
Hull, Duncan, Wolstencroft, Katy, Stevens, Robert, Goble, Carole, Pocock, Mathew R., Li, Peter, ...
Taverna is an application that eases the use and integration of the growing number of molecular biology tools and databases available on the web, especially web services. It allows bioinformaticians...
Semantics-assisted Problem Solving on the Semantic Grid (2005)
Chen, Liming, Shadbolt, Nigel, Goble, Carole, Tao, Feng, Puleston, Colin, Cox, Simon
In this paper we propose a distributed knowledge management framework for semantics and knowledge creation, population and reuse on the Grid. Its objective is to evolve the Grid towards the Semantic...
Semantics-assisted Problem Solving on the Semantic Grid (2005)
Chen, Liming, Shadbolt, Nigel, Goble, Carole, Tao, Feng, Puleston, Colin, Cox, Simon
In this paper we propose a distributed knowledge management framework for semantics and knowledge creation, population and reuse on the Grid. Its objective is to evolve the Grid towards the Semantic...
Learning domain ontologies for semantic web service descriptions (2005)
Sabou, Marta, Wroe, Chris, Goble, Carole, Stuckenschmidt, Heiner
High quality domain ontologies are essential for successful employment of semantic Web services. However, their acquisition is difficult and costly, thus hampering the development of this field. In...
Semantics-assisted Problem Solving on the Semantic Grid (2005)
Chen, Liming, Shadbolt, Nigel, Goble, Carole, Tao, Feng, Puleston, Colin, Cox, Simon
In this paper we propose a distributed knowledge management framework for semantics and knowledge creation, population and reuse on the Grid. Its objective is to evolve the Grid towards the Semantic...
Learning domain ontologies for Semantic Web service descriptions (2005)
Marta Sabou, Chris Wroe, Carole Goble, Heiner Stuckenschmidt
High quality domain ontologies are essential for successful employment of semantic Web services. However, their acquisition is difficult and costly, thus hampering the development of this field. In...
RSA-based Certified Delivery of E-Goods Using Verifiable and Recoverable Signature Encryption (2005)
Ra Nenadić, Ning Zhang, Barry Cheetham, Carole Goble
Abstract: Delivering electronic goods over the Internet is one of the e-commerce applications that will proliferate in the coming years. Certified e-goods delivery is a process where valuable e-goods...
RSA-based Certified Delivery of E-Goods Using Verifiable and Recoverable Signature Encryption (2005)
Ra Nenadić, Ning Zhang, Barry Cheetham, Carole Goble
Abstract: Delivering electronic goods over the Internet is one of the e-commerce applications that will proliferate in the coming years. Certified e-goods delivery is a process where valuable e-goods...
Putting semantics into e-science and grids (2005)
What is the Semantic Grid? How can e-Science benefit from the technologies of the Semantic Web? Can we build a Semantic Web for e-Science? Would that differ from a Semantic Grid? Given our past...
Using the Semantic Web for e-Science: inspiration, incubation, irritation (2005)
We are familiar with the idea of e-Commerce- the electronic trading between consumers and suppliers. In recent years there has been a commensurate paradigm shift in the way that science is conducted....
Pedro ontology services: A framework for rapid ontology markup (2005)
Kevin Garwood, Phillip Lord, Helen Parkinson, Norman W. Paton, Carole Goble
Abstract. Semantic Web technologies offer the possibility of increased accuracy and completeness in search and retrieval operations. In recent years, curators of data resources have begun favouring...
Learning Domain Ontologies for Web Service Descriptions: an Experiment in Bioinformatics (2005)
Marta Sabou, Chris Wroe, Carole Goble, Gilad Mishne
The reasoning tasks that can be performed with semantic web service descriptions depend on the quality of the domain ontologies used to create these descriptions. However, building such domain...
Semantic Grid - Convergence of Technologies (2005)
York Sure, Carole Goble, Carl Kesselman
s other than the originators. Often these schemas are fixed, which makes them rather inflexible. Much of the metadata is hard-coded and buried in code libraries, type systems, or grid applications....
Accessibility: a web engineering approach (2005)
Peter Plessers, Sven Casteleyn, Yeliz Yesilada, Olga De Troyer, Robert Stevens, Simon Harper, ...
vub.ac.be Currently, the vast majority of web sites do not support accessibility for visually impaired users. Usually, these users have to rely on screen readers: applications that sequentially read...
Towards a Semantic Grid Architecture (2005)
The Semantic Grid is an extension of the current Grid in which information and services are given well defined and explicitly represented meaning, better enabling computers and people to work in...
05271 Report on the Dagstuhl Seminar on Semantic Grid - Convergence of Technologies (2005)
Sure, York, Goble, Carole, Kesselman, Carl
The scientific paradigms of the Semantic Web, Web Services, Agents, Peer-to-Peer Networks and Grid Computing are currently receiving a lot of attention in the research community, and are producing...
05271 Abstracts Collection -- Semantic Grid: The Convergence of Technologies (2005)
Sure, York, Goble, Carole, Kesselman, Carl
From 03.07.05 to 08.07.05, the Dagstuhl Seminar 05271 ``Semantic Grid -- The Convergence of Technologies'' was held in the International Conference and Research Center (IBFI), Schloss Dagstuhl....
Semantic Description, Publication and Discovery of Workflows in myGrid (2004)
Miles, Simon, Papay, Juri, Wroe, Chris, Lord, Phillip, Goble, Carole, Moreau, Luc
The bioinformatics scientific process relies on in silico experiments, which are experiments executed in full in a computational environment. Scientists wish to encode the designs of these...
Semantic Description, Publication and Discovery of Workflows in myGrid (2004)
Miles, Simon, Papay, Juri, Wroe, Chris, Lord, Phillip, Goble, Carole, Moreau, Luc
The bioinformatics scientific process relies on in silico experiments, which are experiments executed in full in a computational environment. Scientists wish to encode the designs of these...
Semantic Description, Publication and Discovery of Workflows in myGrid (2004)
Miles, Simon, Papay, Juri, Wroe, Chris, Lord, Phillip, Goble, Carole, Moreau, Luc
The bioinformatics scientific process relies on in silico experiments, which are experiments executed in full in a computational environment. Scientists wish to encode the designs of these...
Automating Experiments Using Semantic Data on a Bioinformatics Grid (2004)
Wroe, Chris, Goble, Carole, Greenwood, Mark, Lord, Phillip, Miles, Simon, Papay, Juri, ...
Automating Experiments Using Semantic Data on a Bioinformatics Grid (2004)
Wroe, Chris, Goble, Carole, Greenwood, Mark, Lord, Phillip, Miles, Simon, Papay, Juri, ...
myGrid assists bioinformaticians in designing and executing in silico experiments using the Grid’s resources. In myGrid, much of this experimental design has been encoded as workflows. Workflows...
Empower Resource Providers to Build the Semantic Grid (2004)
Chen, Liming, Cox, Simon, Tao, Feng, Shadbolt, Nigel, Goble, Carole, Puleston, Colin
Applying the Semantic Web to Manage Knowledge on the Grid (2004)
Tao, Feng, Puleston, Colin, Goble, Carole, Shadbolt, Nigel, Chen, Liming, Pound, Graeme, ...
Geodise [2] uses a toolbox of Grid enabled Matlab functions as building blocks on which higher-level problem solving workflows can be built. The aim is to help domain engineers utilize the Grid and...
Managing Semantic Metadata for the Semantic Grid (2004)
Chen, Liming, Shadbolt, Nigel, Tao, Feng, Goble, Carole, Puleston, Colin, Cox, Simon
Research on the Semantic Web and Web/Grid resource description, discovery and composition is booming but there is currently little effort on a systematic and integrated approach to the management of...
Automating Experiments Using Semantic Data on a Bioinformatics Grid (2004)
Wroe, Chris, Goble, Carole, Greenwood, Mark, Lord, Phillip, Miles, Simon, Papay, Juri, ...
myGrid assists bioinformaticians in designing and executing in silico experiments using the Grid’s resources. In myGrid, much of this experimental design has been encoded as workflows. Workflows...
Empower Resource Providers to Build the Semantic Grid (2004)
Chen, Liming, Cox, Simon, Tao, Feng, Shadbolt, Nigel, Goble, Carole, Puleston, Colin
Applying the Semantic Web to Manage Knowledge on the Grid (2004)
Tao, Feng, Puleston, Colin, Goble, Carole, Shadbolt, Nigel, Chen, Liming, Pound, Graeme, ...
Geodise [2] uses a toolbox of Grid enabled Matlab functions as building blocks on which higher-level problem solving workflows can be built. The aim is to help domain engineers utilize the Grid and...
Managing Semantic Metadata for the Semantic Grid (2004)
Chen, Liming, Shadbolt, Nigel, Tao, Feng, Goble, Carole, Puleston, Colin, Cox, Simon
Research on the Semantic Web and Web/Grid resource description, discovery and composition is booming but there is currently little effort on a systematic and integrated approach to the management of...
Automating Experiments Using Semantic Data on a Bioinformatics Grid (2004)
Wroe, Chris, Goble, Carole, Greenwood, Mark, Lord, Phillip, Miles, Simon, Papay, Juri, ...
myGrid assists bioinformaticians in designing and executing in silico experiments using the Grid’s resources. In myGrid, much of this experimental design has been encoded as workflows. Workflows...
Empower Resource Providers to Build the Semantic Grid (2004)
Chen, Liming, Cox, Simon, Tao, Feng, Shadbolt, Nigel, Goble, Carole, Puleston, Colin
Applying the Semantic Web to Manage Knowledge on the Grid (2004)
Tao, Feng, Puleston, Colin, Goble, Carole, Shadbolt, Nigel, Chen, Liming, Pound, Graeme, ...
Geodise [2] uses a toolbox of Grid enabled Matlab functions as building blocks on which higher-level problem solving workflows can be built. The aim is to help domain engineers utilize the Grid and...
Managing Semantic Metadata for the Semantic Grid (2004)
Chen, Liming, Shadbolt, Nigel, Tao, Feng, Goble, Carole, Puleston, Colin, Cox, Simon
Research on the Semantic Web and Web/Grid resource description, discovery and composition is booming but there is currently little effort on a systematic and integrated approach to the management of...
Delivering web service coordination capability to users (2004)
Tom Oinn, Mark Greenwood, Carole Goble
As web service technology matures there is growing interest in exploiting workflow techniques to coordinate web services. Bioinformaticians are a user community who combine web resources to perform...
Semantic web based content enrichment and knowledge reuse in e-science (2004)
Feng Tao, Liming Chen, Nigel Shadbolt, Fenglian Xu, Simon Cox, Colin Puleston, ...
Abstract We address the life cycle of semantic web based knowledge management from ontology modelling to instance generation and reuse. We illustrate through a semantic web based knowledge management...
Delivering web service coordination capability to users (2004)
Tom Oinn, Mark Greenwood, Carole Goble
As web service technology matures there is growing interest in exploiting workflow techniques to coordinate web services. Bioinformaticians are a user community who combine web resources to perform...
Semantic Description, Publication and Discovery of Workflows in myGrid (2004)
Simon Miles, Juri Papay, Chris Wroe, Phillip Lord, Carole Goble, Luc Moreau
The bioinformatics scientific process relies on in silico experiments, which are experiments executed in full in a computational environment. Scientists wish to encode the designs of these...
A short study on the success of the gene ontology (2004)
Michael Bada, Robert Stevens, Carole Goble, A Gil, Michael Ashburner, Judith A. Blake, ...
While most ontologies have been used only by the groups who created them and for their initially defined purposes, the Gene Ontology (GO), an evolving structured controlled vocabulary of nearly...
Treating shimantic web syndrome with ontologies (2004)
Duncan Hull, Robert Stevens, Phillip Lord, Chris Wroe, Carole Goble
Abstract. This paper describes shimantic web syndrome, the use of “shims ” to align or mediate mismatching third party Web Services that have closely related, but incompatible, inputs and...
Applying the Semantic Web to Manage Knowledge on the Grid. Accepted to the e-Science 2004 (2004)
Feng Tao, Colin Puleston, Carole Goble, Nigel Shadbolt, Liming Chen, Fenglian Xu, ...
Abstract: Geodise [2] uses a toolbox of Grid enabled Matlab functions as building blocks on which higher-level problem solving workflows can be built. The aim is to help domain engineers utilize the...
Applying Semantic Web Services to Bioinformatics Experiences Gained, lessons learnt (2004)
Phillip Lord, Sean Bechhofer, Mark D. Wilkinson, Gary Schiltz, Damian Gessler, Duncan Hull, ...
We have seen an increasing amount of interest in the application of Semantic Web technologies to Web services. The aim is to support automated discovery and composition of the services allowing...
Semantic Web Applications to E-Science in silico Experiments (2004)
Jun Zhao, Carole Goble, Robert Stevens
This paper explains our research and implementations of manual, automatic and deep annotations of provenance logs for e-Science in silico experiments. Compared to annotating general Web documents,...
proXimity: Ad-Hoc Networks for Enhanced Mobility (2004)
Simon Harper, Stephen Pettitt, Carole Goble
David tries not to use unfamiliar trains and buses, he doesn't travel to places he doesn't know, and he doesn't travel in unusual environments without a companion. David is visually...
Simon Harper, Yeliz Yesilada, Carole Goble, Robert Stevens
A high quality of free movement, or mobility, is key to the accessibility, design, and usability of many `common-use' hypermedia resources (Web sites) and key to good mobility is context and...
Middleware to Expand Context and Preview in Hypertext (2004)
Simon Harper, Carole Goble, Robert Stevens, Yeliz Yesilada
Movement, or mobility, is key to the accessibility, design, and usability of many hypermedia resources (websites); and key to good mobility is context and preview by probing. This is especially the...
Yeliz Yesilada, Simon Harper, Carole Goble, Robert Stevens
Travelling upon the Web is difficult for visually impaired users since the Web pages are designed for visual interaction [6]. Visually impaired users usually use screen readers 1 to access the Web in...
Dante annotation and transformation of web pages for visually impaired users (2004)
Yeliz Yesilada, Simon Harper, Carole Goble, Robert Stevens
Most Web pages are designed for visual interaction so the mobility, or ease of travel, of visually impaired Web travellers is reduced [2]. Objects that support travel and mobility are not in an...
A short study on the success of the gene ontology (2004)
Michael Bada, Robert Stevens, Carole Goble, A Gil, Michael Ashburner, Judith A. Blake, ...
While most ontologies have been used only by the groups who created them and for their initially defined purposes, the Gene Ontology (GO), an evolving structured controlled vocabulary of nearly...
Semantic matching of grid resource descriptions (2004)
John Brooke, Donal Fellows, Kevin Garwood, Carole Goble
Abstract. The ability to describe the Grid resources needed by applications is essential for developing seamless access to resources on the Grid. We consider the problem of resource description in...
The Montagues and the Capulets (2004)
Two households, both alike in dignity, In fair Genomics, where we lay our scene, (One, comforted by its logic's rigour, Claims ontology for the realm of pure, The other, with blessed scientist's...
Semantic Support for Grid-Enabled Design Search in Engineering (2003)
Tao, Feng, Chen, Liming, Cox, Simon, Shadbolt, Nigel, Puleston, Colin, Goble, Carole
Semantic Web technologies are evolving the Grid towards the Semantic Grid [2] to yield an intelligent grid which allows seamless process automation, easy knowledge reuse and collaboration within a...
Semantic Support for Grid-Enabled Design Search in Engineering (2003)
Tao, Feng, Chen, Liming, Cox, Simon, Shadbolt, Nigel, Puleston, Colin, Goble, Carole
Semantic Web technologies are evolving the Grid towards the Semantic Grid [2] to yield an intelligent grid which allows seamless process automation, easy knowledge reuse and collaboration within a...
Semantic Support for Grid-Enabled Design Search in Engineering (2003)
Tao, Feng, Chen, Liming, Cox, Simon, Shadbolt, Nigel, Puleston, Colin, Goble, Carole
Semantic Web technologies are evolving the Grid towards the Semantic Grid [2] to yield an intelligent grid which allows seamless process automation, easy knowledge reuse and collaboration within a...
Semantic and Personalised Service Discovery (2003)
Lord, Phillip, Wroe, Chris, Stevens, Robert, Goble, Carole, Miles, Simon, Moreau, Luc, ...
One of the most pervasive classes of services needed to support e-Science applications are those responsible for the discovery of resources. We have developed a solution to the problem of service...
Semantic and Personalised Service Discovery (2003)
Lord, Phillip, Wroe, Chris, Stevens, Robert, Goble, Carole, Miles, Simon, Moreau, Luc, ...
One of the most pervasive classes of services needed to support e-Science applications are those responsible for the discovery of resources. We have developed a solution to the problem of service...
A Foundation for Tool Based Mobility Support for Visually Impaired Web Users (2003)
Yesilada, Yeliz, Stevens, Robert, Goble, Carole
Users make journeys through the Web. Web travel encompasses the tasks of orientation and navigation, the environment and the purpose of the journey. The ease of travel, its mobility, varies from page...
On the Use of Agents in a BioInformatics Grid (2003)
Moreau, Luc, Miles, Simon, Goble, Carole, Greenwood, Mark, Dialani, Vijay, Addis, Matthew, ...
MyGrid is an e-Science Grid project that aims to help biologists and bioinformaticians to perform workflow-based in silico experiments, and help them to automate the management of such workflows...
Towards the Semantic Grid: Enriching Content for Management and Reuse (2003)
Tao, Feng, Cox, Simon, Chen, Liming, Shadbolt, Nigel, Xu, Fenglian, Puleston, Colin, ...
Knowledge and Semantic Web technologies are evolving the Grid towards the Semantic Grid [18] to facilitate knowledge reuse and collaboration within a community of practice. In the Geodise project we...
On the Use of Agents in a BioInformatics Grid (2003)
Moreau, Luc, Miles, Simon, Goble, Carole, Greenwood, Mark, Dialani, Vijay, Addis, Matthew, ...
MyGrid is an e-Science Grid project that aims to help biologists and bioinformaticians to perform workflow-based in silico experiments, and help them to automate the management of such workflows...
Semantic and Personalised Service Discovery (2003)
Lord, Phillip, Wroe, Chris, Stevens, Robert, Goble, Carole, Miles, Simon, Moreau, Luc, ...
One of the most pervasive classes of services needed to support e-Science applications are those responsible for the discovery of resources. We have developed a solution to the problem of service...
Semantic and Personalised Service Discovery (2003)
Lord, Phillip, Wroe, Chris, Stevens, Robert, Goble, Carole, Miles, Simon, Moreau, Luc, ...
One of the most pervasive classes of services needed to support e-Science applications are those responsible for the discovery of resources. We have developed a solution to the problem of service...
Provenance of e-Science Experiments - experience from Bioinformatics (2003)
Greenwood, Mark, Goble, Carole, Stevens, Robert, Zhao, Jun, Addis, Matthew, Marvin, Darren, ...
Like experiments performed at a laboratory bench, the data associated with an e-Science experiment are of reduced value if other scientists are not able to identify the origin, or provenance, of...
Towards a Knowledge-based Approach to Semantic Service Composition (2003)
Chen, Liming, Shadbolt, Nigel, Goble, Carole, Tao, Feng, Cox, Simon, Puleston, Colin, ...
Exploiting Semantics for e-Science on the Semantic Grid (2003)
Chen, Liming, Shadbolt, Nigel, Tao, Feng, Puleston, Colin, Goble, Carole, Cox, Simon
On the Use of Agents in a BioInformatics Grid (2003)
Moreau, Luc, Miles, Simon, Goble, Carole, Greenwood, Mark, Dialani, Vijay, Addis, Matthew, ...
MyGrid is an e-Science Grid project that aims to help biologists and bioinformaticians to perform workflow-based in silico experiments, and help them to automate the management of such workflows...
Towards the Semantic Grid: Enriching Content for Management and Reuse (2003)
Tao, Feng, Cox, Simon, Chen, Liming, Shadbolt, Nigel, Xu, Fenglian, Puleston, Colin, ...
Knowledge and Semantic Web technologies are evolving the Grid towards the Semantic Grid [18] to facilitate knowledge reuse and collaboration within a community of practice. In the Geodise project we...
On the Use of Agents in a BioInformatics Grid (2003)
Moreau, Luc, Miles, Simon, Goble, Carole, Greenwood, Mark, Dialani, Vijay, Addis, Matthew, ...
MyGrid is an e-Science Grid project that aims to help biologists and bioinformaticians to perform workflow-based in silico experiments, and help them to automate the management of such workflows...
Semantic and Personalised Service Discovery (2003)
Lord, Phillip, Wroe, Chris, Stevens, Robert, Goble, Carole, Miles, Simon, Moreau, Luc, ...
One of the most pervasive classes of services needed to support e-Science applications are those responsible for the discovery of resources. We have developed a solution to the problem of service...
Semantic and Personalised Service Discovery (2003)
Lord, Phillip, Wroe, Chris, Stevens, Robert, Goble, Carole, Miles, Simon, Moreau, Luc, ...
One of the most pervasive classes of services needed to support e-Science applications are those responsible for the discovery of resources. We have developed a solution to the problem of service...
Provenance of e-Science Experiments - experience from Bioinformatics (2003)
Greenwood, Mark, Goble, Carole, Stevens, Robert, Zhao, Jun, Addis, Matthew, Marvin, Darren, ...
Like experiments performed at a laboratory bench, the data associated with an e-Science experiment are of reduced value if other scientists are not able to identify the origin, or provenance, of...
Towards a Knowledge-based Approach to Semantic Service Composition (2003)
Chen, Liming, Shadbolt, Nigel, Goble, Carole, Tao, Feng, Cox, Simon, Puleston, Colin, ...
Exploiting Semantics for e-Science on the Semantic Grid (2003)
Chen, Liming, Shadbolt, Nigel, Tao, Feng, Puleston, Colin, Goble, Carole, Cox, Simon
Towards a knowledge-based approach to semantic service composition (2003)
Chen, Liming, Shadbolt, Nigel R., Goble, Carole, Tao, Feng, Cox, Simon J., Puleston, Colin, ...
The successful application of Grid and Web Service technologies to real-world problems, such as e-Science [1], requires not only the development of a common vocabulary and meta-data framework as the...
Towards the semantic grid: enriching content for management and reuse (2003)
Tao, Feng, Cox, Simon, Chen, Liming, Shadbolt, Nigel, Xu, Fenglian, Puleston, Colin, ...
Knowledge and Semantic Web technologies are evolving the Grid towards the Semantic Grid [18] to facilitate knowledge reuse and collaboration within a community of practice. In the Geodise project we...
On the Use of Agents in a BioInformatics Grid (2003)
Moreau, Luc, Miles, Simon, Goble, Carole, Greenwood, Mark, Dialani, Vijay, Addis, Matthew, ...
MyGrid is an e-Science Grid project that aims to help biologists and bioinformaticians to perform workflow-based in silico experiments, and help them to automate the management of such workflows...
Towards the Semantic Grid: Enriching Content for Management and Reuse (2003)
Tao, Feng, Cox, Simon, Chen, Liming, Shadbolt, Nigel, Xu, Fenglian, Puleston, Colin, ...
Knowledge and Semantic Web technologies are evolving the Grid towards the Semantic Grid [18] to facilitate knowledge reuse and collaboration within a community of practice. In the Geodise project we...
On the Use of Agents in a BioInformatics Grid (2003)
Moreau, Luc, Miles, Simon, Goble, Carole, Greenwood, Mark, Dialani, Vijay, Addis, Matthew, ...
MyGrid is an e-Science Grid project that aims to help biologists and bioinformaticians to perform workflow-based in silico experiments, and help them to automate the management of such workflows...
Semantic and Personalised Service Discovery (2003)
Lord, Phillip, Wroe, Chris, Stevens, Robert, Goble, Carole, Miles, Simon, Moreau, Luc, ...
One of the most pervasive classes of services needed to support e-Science applications are those responsible for the discovery of resources. We have developed a solution to the problem of service...
Semantic and Personalised Service Discovery (2003)
Lord, Phillip, Wroe, Chris, Stevens, Robert, Goble, Carole, Miles, Simon, Moreau, Luc, ...
One of the most pervasive classes of services needed to support e-Science applications are those responsible for the discovery of resources. We have developed a solution to the problem of service...
Provenance of e-Science Experiments - experience from Bioinformatics (2003)
Greenwood, Mark, Goble, Carole, Stevens, Robert, Zhao, Jun, Addis, Matthew, Marvin, Darren, ...
Like experiments performed at a laboratory bench, the data associated with an e-Science experiment are of reduced value if other scientists are not able to identify the origin, or provenance, of...
Towards a Knowledge-based Approach to Semantic Service Composition (2003)
Chen, Liming, Shadbolt, Nigel, Goble, Carole, Tao, Feng, Cox, Simon, Puleston, Colin, ...
Exploiting Semantics for e-Science on the Semantic Grid (2003)
Chen, Liming, Shadbolt, Nigel, Tao, Feng, Puleston, Colin, Goble, Carole, Cox, Simon
Annotating, linking and browsing provenance logs for e-science (2003)
Jun Zhao, Carole Goble, Mark Greenwood, Chris Wroe, Robert Stevens
Like experiments performed at a laboratory bench, the results of an e-science in silico experiment are of limited value if other scientists are not able to identify the origin, or provenance, of...
Provenance of e-science experiments - experience from bioinformatics (2003)
Mark Greenwood, Carole Goble, Robert Stevens, Jun Zhao, Matthew Addis, Darren Marvin, ...
Like experiments performed at a laboratory bench, the data associated with an e-Science experiment are of reduced value if other scientists are not able to identify the origin, or provenance, of...
On the use of agents in a bioinformatics grid (2003)
Luc Moreau, Simon Miles, Carole Goble, Mark Greenwood, Vijay Dialani, Matthew Addis, ...
MyGrid is an e-Science Grid project that aims to help biologists and bioinformaticians to perform workflow-based in silico experiments, and help them to automate the management of such workflows...
RP SEQUENCE FROM N.A. RX MEDLINE=86300093; PubMed=3755672; (2003)
Phillip Lord, Robert Stevens, Andy Brass, Carole Goble, Ac P, ...
What is GO for? “The original intent of the group was to construct a set of vocabularies comprising terms that we could share with a common understanding of the meaning of any term used, and that...
On the use of agents in a bioinformatics grid (2003)
Luc Moreau, Simon Miles, Carole Goble, Mark Greenwood, Vijay Dialani, Matthew Addis, ...
MyGrid is an e-Science Grid project that aims to help biologists and bioinformaticians to perform workflow-based in silico experiments, and help them to automate the management of such workflows...
Semantic and personalised service discovery (2003)
Phillip Lord, Chris Wroe, Robert Stevens, Carole Goble, Simon Miles, Luc Moreau, ...
One of the most pervasive classes of services needed to support e-Science applications are those responsible for the discovery of resources. We have developed a solution to the problem of service...
Semantic and Personalised Service Discovery (2003)
Phillip Lord Chris, Chris Wroe, Robert Stevens, Carole Goble, Simon Miles, Luc Moreau, ...
One of the most pervasive classes of services needed to support e-Science applications are those responsible for the discovery of resources. We have developed a solution to the problem of service...
Semantic and Personalised Service Discovery (2003)
Phillip Lord, Chris Wroe, Robert Stevens, Carole Goble, Simon Miles, Luc Moreau, ...
One of the most pervasive classes of services needed to support e-Science applications are those responsible for the discovery of resources. We have developed a solution to the problem of service...
Towards the Semantic Grid: Enriching Content for (2003)
Management And Reuse, Feng Tao, Simon Cox, Liming Chen, Nigel Shadbolt, Fenglian Xu, ...
Knowledge and Semantic Web technologies are evolving the Grid towards the Semantic Grid [18] to facilitate knowledge reuse and collaboration within a community of practice. In the Geodise project we...
Traversing the Web: Mobility Heuristics for Visually Impaired Surfers (2003)
Simon Harper, Carole Goble, Robert Stevens
Movement, or mobility, is key to the accessibility, design, and usability of many websites. While some peripheral mobility issues have been addressed few have centered on the mobility problems of...
Yeliz Yesilada, Simon Harper, Carole Goble, Robert Stevens
We have previously shown that the mobility, or ease of travel, of visually impaired Web users is reduced since most Web pages are usually designed for visual interaction[7]. Therefore, in a visually...
Sentinel: Towards an Ambient Mobility Network (2003)
Simon Harper, Stephen Pettitt, Carole Goble
Purpose We are concerned with aiding the mobility of visually impaired travellers around often complex and unfamiliar internal and urban environments. To do this we focus on a users interaction with...
Towel: Experiences of Augmenting the Web with Journey Knowledge (2003)
Simon Harper, Carole Goble, Robert Stevens, Yeliz Yesilada
this paper we briefly summarise our evaluation of the tool and describe the lessons we have learned
Yeliz Yesilada, Simon Harper, Carole Goble, Robert Stevens
We have previously shown that the mobility, or ease of travel, of visually impaired Web users is reduced since most Web pages are usually designed for visual interaction[7]. Therefore, in a visually...
A Foundation for Tool Based Mobility Support for Visually Impaired Web Users (2003)
Yeliz Yesilada, Robert Stevens, Carole Goble
Users make journeys through the Web. Web travel encompasses the tasks of orientation and navigation, the environment and the purpose of the journey. The ease of travel, its mobility, varies from page...
Semantic and Personalised Service Discovery (2003)
Phillip Lord, Chris S Wroe, Robert Stevens, Carole Goble, Simon Miles, Luc Moreau, ...
One of the most pervasive classes of services needed to support e-Science applications are those responsible for the discovery of resources. We have developed a solution to the problem of service...
Building Ontologies in DAML + OIL (2003)
Robert Stevens, Chris Wroe, Sean Bechhofer, Phillip Lord, Alan Rector, Carole Goble
In this article we describe an approach to representing and building ontologies advocated by the Bioinformatics and Medical Informatics groups at the University of Manchester. The hand-crafting of...
The Grid: an application of the semantic web (2002)
Goble, Carole, De Roure, David
The Grid is an emerging platform to support on-demand "virtual organisations" for coordinated resource sharing and problem solving on a global scale. The application thrust is large-scale scientific...
The Grid: an application of the semantic web (2002)
Goble, Carole, De Roure, David
The Grid is an emerging platform to support on-demand "virtual organisations" for coordinated resource sharing and problem solving on a global scale. The application thrust is large-scale scientific...
The Grid: an application of the semantic web (2002)
Goble, Carole, De Roure, David
The Grid is an emerging platform to support on-demand "virtual organisations" for coordinated resource sharing and problem solving on a global scale. The application thrust is large-scale scientific...
On the Use of Agents in a BioInformatics Grid (2002)
Moreau, Luc, Miles, Simon, Goble, Carole, Greenwood, Mark, Dialani, Vijay, Addis, Matthew, ...
MyGrid is an e-Science Grid project that aims to help biologists and bioinformaticians to perform workflow-based in silico experiments, and help to automate the management of such workflows through...
On the Use of Agents in a BioInformatics Grid (2002)
Moreau, Luc, Miles, Simon, Goble, Carole, Greenwood, Mark, Dialani, Vijay, Addis, Matthew, ...
MyGrid is an e-Science Grid project that aims to help biologists and bioinformaticians to perform workflow-based in silico experiments, and help to automate the management of such workflows through...
On the Use of Agents in a BioInformatics Grid (2002)
Moreau, Luc, Miles, Simon, Goble, Carole, Greenwood, Mark, Dialani, Vijay, Addis, Matthew, ...
MyGrid is an e-Science Grid project that aims to help biologists and bioinformaticians to perform workflow-based in silico experiments, and help to automate the management of such workflows through...
Building a Bioinformatics Ontology using OIL (2002)
Robert Stevens, Carole Goble, Ian Horrocks, Sean Bechhofer
This paper describes the initial stages of building an ontology of bioinformatics and molecular biology. The conceptualisation is encoded using the Ontology Inference Layer (OIL), a knowledge...
an eXtensible Personal Mobility Interface (2002)
Semantic Web Of, Simon Harper, Stephen Pettitt, Carole Goble
Introduction Personal mobility - mobility can be thought of as the ease as opposed to the opportunity for travel - is important not just for the implicit benefits of easy and accurate navigation and...
Conceptual Linking: Ontology-based Open Hypermedia (2001)
Carr, Leslie, Bechhofer, Sean, Goble, Carole, Hall, Wendy
This paper describes the attempts of the COHSE project to define and deploy a Conceptual Open Hypermedia Service. Consisting of an ontological reasoning service which is used to represent a...
Conceptual Linking: Ontology-based Open Hypermedia (2001)
Carr, Leslie, Hall, Wendy, Bechhofer, Sean, Goble, Carole
This paper describes the attempts of the COHSE project to define and deploy a Conceptual Open Hypermedia Service. Consisting of • an ontological reasoning service which is used to represent a...
Conceptual Linking: Ontology-based Open Hypermedia (2001)
Carr, Leslie, Hall, Wendy, Bechhofer, Sean, Goble, Carole
This paper describes the attempts of the COHSE project to define and deploy a Conceptual Open Hypermedia Service. Consisting of • an ontological reasoning service which is used to represent a...
Conceptual Linking: Ontology-based Open Hypermedia (2001)
Carr, Leslie, Hall, Wendy, Bechhofer, Sean, Goble, Carole
This paper describes the attempts of the COHSE project to define and deploy a Conceptual Open Hypermedia Service. Consisting of • an ontological reasoning service which is used to represent a...
OilEd: a reason-able ontology editor for the semantic web (2001)
Sean Bechhofer, Ian Horrocks, Carole Goble, Robert Stevens
Ontologies will play a pivotal role in the "Semantic Web", where they will provide a source of precisely defined terms that can be communicated across people and applications....
Thesaurus construction through knowledge representation (2001)
Semantic metadata describing subject content plays a vital role in supporting indexing and retrieval in Digital Libraries. Mechanisms used to deliver this metadata include keyword collections,...
OilEd: a reason-able ontology editor for the semantic web (2001)
Sean Bechhofer, Ian Horrocks, Carole Goble, Robert Stevens
Abstract. Ontologies will play a pivotal r61e in the "Semantic Web", where they will provide a source of precisely defined terms that can be communicated across people and...
OilEd: a reason-able ontology editor for the semantic web (2001)
Sean Bechhofer, Ian Horrocks, Carole Goble, Robert Stevens
Ontologies will play a pivotal rôle in the “Semantic Web”, where they will provide a source of precisely defined terms that can be communicated across people and applications. OilEd, is an...
Building a reason-able bioinformatics ontology using OIL (2001)
Robert Stevens, Ian Horrocks, Carole Goble, Sean Bechhofer
Ontologies will play an important role in bioinformatics, as they do in other disciplines, where they will provide a source of precisely defined terms that can be communicated across people and...
Building a reason-able bioinformatics ontology using OIL (2001)
Robert Stevens, Ian Horrocks, Carole Goble, Sean Bechhofer
Ontologies will play an important role in bioinformatics, as they do in other disciplines, where they will provide a source of precisely defined terms that can be communicated across people and...
OILing the way to Machine Understandable Bioinformatics Resources (2001)
Robert Stevens, Carole Goble, Ian Horrocks, Sean Bechhofer
The complex questions and analyses posed by biologists, as well as the diverse data resources they develop, require the fusion of evidence from different, independently developed and heterogeneous...
Conceptual linking: Ontology-based open hypermedia (2001)
Leslie Carr, Sean Bechhofer, Carole Goble, Wendy Hall
2 Information Management Group
Building a reason-able bioinformatics ontology using OIL (2001)
Robert Stevens, Ian Horrocks, Carole Goble, Sean Bechhofer
Ontologies will play an important role in bioinformatics, as they do in other disciplines, where they will provide a source of precisely defined terms that can be communicated across people and...
Prototype mobility tools for visually impaired surfers (2001)
Simon Harper, Carole Goble, Robert Stevens
In [1] we extended the notion of travel to include environment, feedback and the purpose of the current travel task. Specifically, we likened web use to travelling in a virtual space, compared it to...
Building a reason-able bioinformatics ontology using OIL (2001)
Robert Stevens, Ian Horrocks, Carole Goble, Sean Bechhofer
Ontologies will play an important role in bioinformatics, as they do in other disciplines, where they will provide a source of precisely defined terms that can be communicated across people and...
Web Mobility Guidelines for Visually Impaired Surfers (2001)
Simon Harper, Carole Goble, Robert Stevens
This paper seeks to address these issues by extending current guidelines and design methods to include the real-world mobility concepts of orientation, memory, environment, preview and the purpose of...
Information Management for Genome Level Bioinformatics (2001)
� Introduction- why it matters. � Genome level data. � Genomic databases. � Modelling challenges. � Integrating biological databases.
Information Management for Genome Level Bioinformatics (2001)
� Introduction- why it matters. � Genome level data. � Genomic databases. � Modelling challenges. � Integrating biological databases.
Conceptual linking: ontology-based open hypermedia (2001)
Carr, Leslie, Hall, Wendy, Bechhofer, Sean, Goble, Carole
This paper describes the attempts of the COHSE project to define and deploy a Conceptual Open Hypermedia Service. Consisting of • an ontological reasoning service which is used to represent a...
The Low Down on e-Science and Grids for Biology (2001)
The Grid is touted as a next generation Internet/Web, designed primarily to support e-Science. I hope to shed some light on what the Grid is, its purpose, and its potential impact on scientific...
A classification of tasks in bioinformatics (2001)
Stevens, Robert, Goble, Carole, Baker, Patricia, Brass, Andy
Motivation: This paper reports on a survey of bioinformatics tasks currently undertaken by working biologists. The aim was to find the range of tasks that need to be supported and the components...
Sagitus Solutions Limited (2000)
Robert Stevens, Carole Goble, Patricia Baker, Andy Brass, Grafton Street
Motivation: This paper reports on a survey of bioinformatics tasks currently undertaken by working biologists. The aim was to find the range of tasks that need to be supported and the components...
A Pilot Study to Examine the Mobility Problems of Visually Impaired Users Travelling the Web (2000)
Simon Harper, Carole GOBLE, Robert Stevens
The `Towel' project seeks to find solutions to problems encountered by both visually impaired and sighted users when travelling in the World Wide Web by leveraging solutions found in real-world...
Guiding the user: An ontology driven interface (1999)
Sean Bechhofer, Robert Stevens, Gary Ng, Alex Jacoby, Carole Goble
We describe a novel query interface allowing the construction and manipulation of Description Logic expressions. The construction process is driven by the content of a conceptual model, guiding the...
Guiding the user: An ontology driven interface (1999)
Sean Bechhofer, Robert Stevens, Gary Ng, Alex Jacoby, Carole Goble
We describe a novel query interface allowing the construction and manipulation of Description Logic expressions. The construction process is driven by the content of a conceptual model, guiding the...
Towel: Real world mobility on the web (1999)
Simon Harper, Robert Stevens, Carole Goble
Abstract: The ‘Towel ’ project seeks to find solutions to problems encountered by both visually impaired and sighted users when travelling in the World Wide Web. Drawing similarities between...
Guiding the user: An ontology driven interface (1999)
Sean Bechhofer, Robert Stevens, Gary Ng, Alex Jacoby, Carole Goble
We describe a novel query interface allowing the construction and manipulation of Description Logic expressions. The construction process is driven by the content of a conceptual model, guiding the...
Complex Query Formulation Over Diverse Information Sources in TAMBIS (1999)
Robert Stevens, Carole Goble, Norman W. Paton, Sean Bechhofer, Gary Ng, Patricia Baker, ...
Biologists increasingly need to ask complex questions over the large number of data and analysis tools that now exist. To do this, the individual sources need to be made to work together. The...
Towel: Real World Mobility on the Web (1999)
Simon Harper Robert, Robert Stevens, Carole Goble
The `Towel' project seeks to find solutions to problems encountered by both visually impaired and sighted users when travelling in the World Wide Web.
A framework for describing visual interfaces to databases (1998)
Norman Murray, Carole Goble, Norman W. Paton
In the field of HCI there exist many formalisms for analysing, describing and evaluating interactive systems. However, in developing and evaluating user interfaces to databases, we found it necessary...
Towards an Efficient Description Logics System With Individuals (1998)
Sergio Tessaris, Supervisors Graham Gough, Carole Goble, Advisor David Rydeheard
This report presents the status of the research the author is conducting on the development of a complete Description Logics knowledge representation system. Description Logics knowledge...
Kaleidoquery: A Visual Query Language for Object Databases (1998)
Norman Murray, Norman Paton, Carole Goble
In this paper we describe Kaleidoquery, a visual query language for object databases with the same expressive power as OQL. We will describe the design philosophy behind the filter flow nature of...
A Framework for Describing Visual Interfaces to Databases (1998)
Norman Murray, Carole Goble, Norman W. Paton
In the field of HCI there exist many formalisms for analysing, describing and evaluating interactive systems. However, in developing and evaluating user interfaces to databases, we found it necessary...
Kaleidoscape: A 3D Environment for Querying ODMG Compliant Databases (1998)
Norman Murray, Carole Goble, Norman Paton
Kaleidoscape is a three dimensional (3D) implementation of a data-flow oriented visual query language, which has been implemented in 3D to examine the advantages and disadvantages of such an...
Using a Description Logic to Drive Query Interfaces (1997)
this paper allow us to apply this schema level feedback, while the description logic allows us to provide data level feedback, using the classification of the instance space. Sanctions can be seen to...
Description Logics And Multimedia - Applying Lessons Learnt From The GALEN Project (1996)
. We describe some preliminary exploratory work in the use of the GRAIL [2] description logic and GALEN terminology server architecture [24] to support classification of art images, based on our...
A Description Logic Based Schema for the Classification of Medical Data (1996)
Ian Horrocks, Alan Rector, Carole Goble
. The European Galen project aims to promote the sharing and re-use of medical data by providing a concept model which can be used by application designers as a flexible and extensible classification...
A Medical Terminology Server (1994)
Carole Goble, Peter Crowther, Danny Solomon
. GRAIL is a semantically constrained, generative compositional descriptive logic with subsumption and multiple inheritance designed to cope with the scale, complexity and variable granularity of...
Schemas for Telling Stories in Medical Records (1994)
. To accurately support a patient's medical record, at least four interrelated models are required: a simple static one-level schema is inadequate. The models must support the medical record as...
Conceptual, Semantic and Information Models for Medicine (1994)
Carole Goble, Sean Bechhofer, Danny Solomon, Alan Rector, Anthony Nowlan, Andrzej Glowinski
. This paper presents the intensional requirements of the medical record. It suggests that at least four models are required in order to cover the complexity of the medical domain. It goes onto...
Paolo Missier, Pinar Alper, Oscar Corcho, Ioannis Kotsiopoulos, Ian Dunlop, Wei Xing, ...
Grid resources such as data, services, and equipment, are increasingly being annotated with descriptive metadata that facilitates their discovery and their use in the context of Virtual Organizations...
Taverna: a tool for building and running workflows of services
Hull, Duncan, Wolstencroft, Katy, Stevens, Robert, Goble, Carole, Pocock, Mathew R., Li, Peter, ...
Taverna is an application that eases the use and integration of the growing number of molecular biology tools and databases available on the web, especially web services. It allows bioinformaticians...
Taverna: a tool for building and running workflows of services
Hull, Duncan, Wolstencroft, Katy, Stevens, Robert, Goble, Carole, Pocock, Mathew R., Li, Peter, ...
Taverna is an application that eases the use and integration of the growing number of molecular biology tools and databases available on the web, especially web services. It allows bioinformaticians...
The Low Down on e-Science and Grids for Biology
The Grid is touted as a next generation Internet/Web, designed primarily to support e-Science. I hope to shed some light on what the Grid is, its purpose, and its potential impact on scientific...
Building Ontologies in DAML + OIL
Stevens, Robert, Wroe, Chris, Bechhofer, Sean, Lord, Phillip, Rector, Alan, Goble, Carole
In this article we describe an approach to representing and building ontologies advocated by the Bioinformatics and Medical Informatics groups at the University of Manchester. The hand-crafting of...
The Montagues and the Capulets
Two households, both alike in dignity, In fair Genomics, where we lay our scene, (One, comforted by its logic's rigour, Claims ontology for the realm of pure, The other, with blessed scientist's...
Delivering Terminological Services
Terminologies or controlled vocabularies are important as they provide a framework within which communities can share knowledge. We describe three applications using a terminology represented in a...