Clustered microRNAs' coordination in regulating protein-protein interaction network (2009)
Yuan, Xiongying, Liu, Changning, Yang, Pengcheng, He, Shunmin, Liao, Qi, Kang, Shuli, ...
Abstract Background MicroRNAs (miRNAs), a growing class of small RNAs with crucial regulatory roles at the post-transcriptional level, are usually found to be clustered on chromosomes. However, with...
MicroRNA-encoding long non-coding RNAs (2008)
He, Shunmin, Su, Hua, Liu, Changning, Skogerbø, Geir, He, Housheng, He, Dandan, ...
Abstract Background Recent analysis of the mouse transcriptional data has revealed the existence of ~34,000 messenger-like non-coding RNAs (ml-ncRNAs). Whereas the functional properties of these...
Ziqiang Tang, Changning Liu, Shanshan Wu, Wenjuan Hao
The title compound, C30H32FNO2, was synthesized by the reaction of dimedone with 4-fluorobenzaldehyde and p-toluidine in water. The dihydropyridine and both of the cyclohexenone rings are not planar...
NONCODE v2.0: decoding the non-coding (2008)
He, Shunmin, Liu, Changning, Skogerbø, Geir, Zhao, Haitao, Wang, Jie, Liu, Tao, ...
The NONCODE database is an integrated knowledge database designed for the analysis of non-coding RNAs (ncRNAs). Since NONCODE was first released 3 years ago, the number of known ncRNAs has grown...
antiCODE: a natural sense-antisense transcripts database (2007)
Yin, Yifei, Zhao, Yi, Wang, Jie, Liu, Changning, Chen, Shuguang, Chen, Runsheng, ...
Abstract Background Natural antisense transcripts (NATs) are endogenous RNA molecules that exhibit partial or complete complementarity to other RNAs, and that may contribute to the regulation of...
Dynamic Changes in Subgraph Preference Profiles of Crucial Transcription Factors (2006)
Zhihua Zhang, Changning Liu, Geir Skogerbø, Xiaopeng Zhu, Hongchao Lu, Lan Chen, ...
Transcription factors with a large number of target genes—transcription hub(s), or THub(s)—are usually crucial components of the regulatory system of a cell, and the different patterns through...
Yifei Yin, Yi Zhao, Jie Wang, Changning Liu, Shuguang Chen, Runsheng Chen, ...
© 2007 Yin et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License
NPInter: the noncoding RNAs and protein related biomacromolecules interaction database (2006)
Wu, Tao, Wang, Jie, Liu, Changning, Zhang, Yong, Shi, Baochen, Zhu, Xiaopeng, ...
The noncoding RNAs and protein related biomacromolecules interaction database (NPInter; http://bioinfo.ibp.ac.cn/NPInter or http://www.bioinfo.org.cn/NPInter) is a database that documents...
Wang, Xiaosong, Zhao, Haitao, Xu, Qingwen, Jin, Weibo, Liu, Changning, Zhang, Huagang, ...
Tumor-associated antigens (TAAs) have been the most actively employed targets in the clinical diagnosis and treatment of human carcinoma, such as PSA in the diagnosis of prostate cancer and NY-ESO-1...
Deng, Wei, Zhu, Xiaopeng, Skogerbø, Geir, Zhao, Yi, Fu, Zhuo, Wang, Yudong, ...
Recent evidence points to considerable transcription occurring in non-protein-coding regions of eukaryote genomes. However, their lack of conservation and demonstrated function have created...
R: Noncode: an integrated knowledge database of non-coding rnas (2005)
Changning Liu, Baoyan Bai, Geir Skogerbø, Lun Cai, Wei Deng, Yong Zhang, ...
NONCODE is an integrated knowledge database dedicated to non-coding RNAs (ncRNAs), that is to say, RNAs that function without being translated into proteins. All ncRNAs in NONCODE were filtered...
NONCODE: an integrated knowledge database of non-coding RNAs (2005)
Liu, Changning, Bai, Baoyan, Skogerbø, Geir, Cai, Lun, Deng, Wei, Zhang, Yong, ...
NONCODE is an integrated knowledge database dedicated to non-coding RNAs (ncRNAs), that is to say, RNAs that function without being translated into proteins. All ncRNAs in NONCODE were filtered...
Deng, Wei, Zhu, Xiaopeng, Skogerbø, Geir, Zhao, Yi, Fu, Zhuo, Wang, Yudong, ...
Recent evidence points to considerable transcription occurring in non-protein-coding regions of eukaryote genomes. However, their lack of conservation and demonstrated function have created...
NONCODE: an integrated knowledge database of non-coding RNAs
Liu, Changning, Bai, Baoyan, Skogerbø, Geir, Cai, Lun, Deng, Wei, Zhang, Yong, ...
NONCODE is an integrated knowledge database dedicated to non-coding RNAs (ncRNAs), that is to say, RNAs that function without being translated into proteins. All ncRNAs in NONCODE were filtered...
NPInter: the noncoding RNAs and protein related biomacromolecules interaction database
Wu, Tao, Wang, Jie, Liu, Changning, Zhang, Yong, Shi, Baochen, Zhu, Xiaopeng, ...
The noncoding RNAs and protein related biomacromolecules interaction database (NPInter; or ) is a database that documents experimentally determined functional interactions between noncoding RNAs...
HPtaa database-potential target genes for clinical diagnosis and immunotherapy of human carcinoma
Wang, Xiaosong, Zhao, Haitao, Xu, Qingwen, Jin, Weibo, Liu, Changning, Zhang, Huagang, ...
Tumor-associated antigens (TAAs) have been the most actively employed targets in the clinical diagnosis and treatment of human carcinoma, such as PSA in the diagnosis of prostate cancer and NY-ESO-1...
Dynamic Changes in Subgraph Preference Profiles of Crucial Transcription Factors
Zhang, Zhihua, Liu, Changning, Skogerbø, Geir, Zhu, Xiaopeng, Lu, Hongchao, Chen, Lan, ...
Transcription factors with a large number of target genes—transcription hub(s), or THub(s)—are usually crucial components of the regulatory system of a cell, and the different patterns through...
Deng, Wei, Zhu, Xiaopeng, Skogerbø, Geir, Zhao, Yi, Fu, Zhuo, Wang, Yudong, ...
Recent evidence points to considerable transcription occurring in non-protein-coding regions of eukaryote genomes. However, their lack of conservation and demonstrated function have created...
NONCODE: an integrated knowledge database of non-coding RNAs
Liu, Changning, Bai, Baoyan, Skogerbø, Geir, Cai, Lun, Deng, Wei, Zhang, Yong, ...
NONCODE is an integrated knowledge database dedicated to non-coding RNAs (ncRNAs), that is to say, RNAs that function without being translated into proteins. All ncRNAs in NONCODE were filtered...
NPInter: the noncoding RNAs and protein related biomacromolecules interaction database
Wu, Tao, Wang, Jie, Liu, Changning, Zhang, Yong, Shi, Baochen, Zhu, Xiaopeng, ...
The noncoding RNAs and protein related biomacromolecules interaction database (NPInter; or ) is a database that documents experimentally determined functional interactions between noncoding RNAs...
HPtaa database-potential target genes for clinical diagnosis and immunotherapy of human carcinoma
Wang, Xiaosong, Zhao, Haitao, Xu, Qingwen, Jin, Weibo, Liu, Changning, Zhang, Huagang, ...
Tumor-associated antigens (TAAs) have been the most actively employed targets in the clinical diagnosis and treatment of human carcinoma, such as PSA in the diagnosis of prostate cancer and NY-ESO-1...
Deng, Wei, Zhu, Xiaopeng, Skogerbø, Geir, Zhao, Yi, Fu, Zhuo, Wang, Yudong, ...
Recent evidence points to considerable transcription occurring in non-protein-coding regions of eukaryote genomes. However, their lack of conservation and demonstrated function have created...
Dynamic Changes in Subgraph Preference Profiles of Crucial Transcription Factors
Zhang, Zhihua, Liu, Changning, Skogerbø, Geir, Zhu, Xiaopeng, Lu, Hongchao, Chen, Lan, ...
Transcription factors with a large number of target genes—transcription hub(s), or THub(s)—are usually crucial components of the regulatory system of a cell, and the different patterns through...
antiCODE: a natural sense-antisense transcripts database
Yin, Yifei, Zhao, Yi, Wang, Jie, Liu, Changning, Chen, Shuguang, Chen, Runsheng, ...
NONCODE v2.0: decoding the non-coding
He, Shunmin, Liu, Changning, Skogerbø, Geir, Zhao, Haitao, Wang, Jie, Liu, Tao, ...
The NONCODE database is an integrated knowledge database designed for the analysis of non-coding RNAs (ncRNAs). Since NONCODE was first released 3 years ago, the number of known ncRNAs has grown...