Chengbang Huang

Simulation of Chicken-limb Growth with Irregular Domain Shape (2009)

Kedar Aras, Trevor Cickovski, David Cieslak, Chengbang Huang

Abstract — Morphogenesis governs the formation of patterns in embryonic cell development, which eventually differentiate into bone and organs. Patterning instabilities that occur during...

IEEE/ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS 1 Predicting Protein-Protein Interactions from Protein Domains Using a Set Cover Approach (2007)

Chengbang Huang, Simon P. Kanaan, Stefan Wuchty, Danny Z. Chen, Jesús A. Izaguirre

The goal of contemporary proteome research is the elucidation of protein interactions in the cell. Based on cur-rently available protein-protein interaction and domain data of S. cerevisiae, we...

IEEE/ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS 1 A Framework for Three-Dimensional Simulation of Morphogenesis (2007)

Trevor Cickovski, Chengbang Huang, Rajiv Chaturvedi, Tilmann Glimm, Mark Alber, ...

2004 DRAFT IEEE/ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS 2 We present COMPUCELL3D, a software framework for three-dimensional simulation of morphogen-esis in different organisms....

Predicting protein-protein interactions from protein domains using a set cover approach (2007)

Chengbang Huang, Faruck Morcos, Simon P. Kanaan, Stefan Wuchty, Danny Z. Chen, Jesús A. Izaguirre

Abstract—One goal of contemporary proteome research is the elucidation of cellular protein interactions. Based on currently available protein-protein interaction and domain data, we introduce a...

Predicting protein-protein interactions from protein domains using a set cover approach (2007)

Chengbang Huang, Faruck Morcos, Simon P. Kanaan, Stefan Wuchty, Danny Z. Chen, Jesús A. Izaguirre

Abstract—One goal of contemporary proteome research is the elucidation of cellular protein interactions. Based on currently available protein-protein interaction and domain data, we introduce a...

Multiscale computational methods for morphogenesis and algorithms for protein-protein interaction inference [electronic resource] / (2005)

Huang, Chengbang.

Thesis (Ph. D.)--University of Notre Dame, 2005.

Multiscale computational methods for morphogenesis and algorithms for protein-protein interaction inference (2005)

Huang, Chengbang.

Thesis (Ph. D.)--University of Notre Dame, 2005.

Other contributors: (2005)

Jesús A. Izaguirre, Trevor M. Cickovski, Kedar Aras, Chengbang Huang, Joseph Coffland

We present this user guide as a tool to detail both how to operate and use key features of the COM-PUCELL3D framework. COMPUCELL3D was designed to be a useful framework to run simulations of...

A framework for three-dimensional simulation of morphogenesis (2005)

Trevor M. Cickovski, Chengbang Huang, Rajiv Chaturvedi, Tilmann Glimm, H. George, E. Hentschel, ...

Abstract—We present COMPUCELL3D, a software framework for three-dimensional simulation of morphogenesis in different organisms. COMPUCELL3D employs biologically relevant models for cell clustering,...