Unlocking the bovine genome (2009)
Tellam, Ross L, Lemay, Danielle G, Van Tassell, Curtis P, Lewin, Harris A, Worley, Kim C, Elsik, Christine G
Abstract The draft genome sequence of cattle ( Bos taurus ) has now been analyzed by the Bovine Genome Sequencing and Analysis Consortium and the Bovine HapMap Consortium, which together represent an...
The genome of the model beetle and pest Tribolium castaneum (2008)
Gibbs, Richard A, Weinstock, George M, Brown, Susan J, Denell, Robin, Beeman, Richard W, ...
Tribolium castaneum is a member of the most species-rich eukaryotic order, a powerful model organism for the study of generalized insect development, and an important pest of stored agricultural...
The genome of the model beetle and pest Tribolium castaneum (2008)
Gibbs, Richard A., Weinstock, George M., Brown, Susan J., Denell, Robin, Beeman, Richard W., ...
Tribolium castaneum is a member of the most species-rich eukaryotic order, a powerful model organism for the study of generalized insect development, and an important pest of stored agricultural...
Computational and transcriptional evidence for microRNAs in the honey bee genome (2007)
Weaver, Daniel B, Anzola, Juan M, Evans, Jay D, Reid, Jeffrey G, Reese, Justin T, Childs, Kevin L, ...
Abstract Background Non-coding microRNAs (miRNAs) are key regulators of gene expression in eukaryotes. Insect miRNAs help regulate the levels of proteins involved with development, metabolism, and...
Creating a honey bee consensus gene set (2007)
Elsik, Christine G, Mackey, Aaron J, Reese, Justin T, Milshina, Natalia V, Roos, David S, Weinstock, George M
Abstract Background We wished to produce a single reference gene set for honey bee ( Apis mellifera ). Our motivation was twofold. First, we wished to obtain an improved set of gene models with...
Insights into social insects from the genome of the honeybee Apis mellifera (2006)
Robinson, Gene E, Gibbs, Richard A, Worley, Kim C, Evans, Jay D, Maleszka, Ryszard, ...
Here we report the genome sequence of the honeybee Apis mellifera, a key model for social behaviour and essential to global ecology through pollination. Compared with other sequenced insect genomes,...
Community annotation: Procedures, protocols, and supporting tools (2006)
Elsik, Christine G., Worley, Kim C., Zhang, Lan, Milshina, Natalia V., Jiang, Huaiyang, Reese, Justin T., ...
Investigators at the Baylor College of Medicine Human Genome Sequencing Center (BCM–HGSC) and BeeBase organized a community-wide effort to manually annotate the honey bee (Apis mellifera) genome....
Patterns of conservation and change in honey bee developmental genes (2006)
Dearden, Peter K., Wilson, Megan J., Sablan, Lisha, Osborne, Peter W., Havler, Melanie, McNaughton, Euan, ...
The current insect genome sequencing projects provide an opportunity to extend studies of the evolution of developmental genes and pathways in insects. In this paper we examine the conservation and...
Patterns of conservation and change in honey bee developmental genes (2006)
Dearden, Peter K., Wilson, Megan J., Sablan, Lisha, Osborne, Peter W., Havler, Melanie, McNaughton, Euan, ...
The current insect genome sequencing projects provide an opportunity to extend studies of the evolution of developmental genes and pathways in insects. In this paper we examine the conservation and...
Community annotation: Procedures, protocols, and supporting tools (2006)
Elsik, Christine G., Worley, Kim C., Zhang, Lan, Milshina, Natalia V., Jiang, Huaiyang, Reese, Justin T., ...
Investigators at the Baylor College of Medicine Human Genome Sequencing Center (BCM–HGSC) and BeeBase organized a community-wide effort to manually annotate the honey bee (Apis mellifera) genome....
Prediction of protein interdomain linker regions by a hidden Markov model (2005)
Kyounghwa Bae, Bani K. Mallick, Christine G. Elsik
doi:10.1093/bioinformatics/bti363
Prediction of protein interdomain linker regions by a hidden Markov model (2005)
Bae, Kyounghwa, Mallick, Bani K., Elsik, Christine G.
Motivation: Our aim was to predict protein interdomain linker regions using sequence alone, without requiring known homology. Identifying linker regions will delineate domain boundaries, and can be...
Prediction of protein inter-domain linker regions by a hidden Markov model (2005)
Bae, Kyounghwa, Mallick, Bani K., Elsik, Christine G.
Motivation: We wish to predict protein inter-domain linker regions using sequence alone, without requiring known homology. Identifying linker regions will delineate domain boundaries, and can be used...
Comparative Genomics of Plant Chromosomes
Paterson, Andrew H., Bowers, John E., Burow, Mark D., Draye, Xavier, Elsik, Christine G., Jiang, Chun-Xiao, ...
Comparative Genomics of Plant Chromosomes
Paterson, Andrew H., Bowers, John E., Burow, Mark D., Draye, Xavier, Elsik, Christine G., Jiang, Chun-Xiao, ...
Creating a honey bee consensus gene set
Elsik, Christine G, Mackey, Aaron J, Reese, Justin T, Milshina, Natalia V, Roos, David S, Weinstock, George M
A high-quality consensus gene set for the honey bee (Apis mellifera) created using a new algorithm (GLEAN) is described.
Patterns of conservation and change in honey bee developmental genes
Dearden, Peter K., Wilson, Megan J., Sablan, Lisha, Osborne, Peter W., Havler, Melanie, McNaughton, Euan, ...
The current insect genome sequencing projects provide an opportunity to extend studies of the evolution of developmental genes and pathways in insects. In this paper we examine the conservation and...
Computational and transcriptional evidence for microRNAs in the honey bee genome
Weaver, Daniel B, Anzola, Juan M, Evans, Jay D, Reid, Jeffrey G, Reese, Justin T, Childs, Kevin L, ...
A total of 68 non-redundant candidate honey bee miRNAs were identified computationally; several of them appear to have previously unrecognized orthologs in the Drosophila genome. Several miRNAs...
Tellam, Ross L, Lemay, Danielle G, Van Tassell, Curtis P, Lewin, Harris A, Worley, Kim C, Elsik, Christine G
The draft genome sequence of cattle (Bos taurus) has now been analyzed by the Bovine Genome Sequencing and Analysis Consortium and the Bovine HapMap Consortium, which together represent an extensive...