Can sugars be produced from fatty acids? A test case for pathway analysis tools (2009)
De Figueiredo, Luis F., Schuster, Stefan, Kaleta, Christoph, Fell, David A.
Motivation: In recent years, several methods have been proposed for determining metabolic pathways in an automated way based on network topology. The aim of this work is to analyse these methods by...
Using chemical organization theory for model checking (2009)
Kaleta, Christoph, Richter, Stephan, Dittrich, Peter
Motivation: The increasing number and complexity of biomodels makes automatic procedures for checking the models' properties and quality necessary. Approaches like elementary mode analysis, flux...
Phenotype prediction in regulated metabolic networks (2008)
Kaleta, Christoph, Centler, Florian, Di Fenizio, Pietro, Dittrich, Peter
Abstract Background Due to the growing amount of biological knowledge that is incorporated into metabolic network models, their analysis has become more and more challenging. Here, we examine the...
Computing chemical organizations in biological networks (2008)
Centler, Florian, Kaleta, Christoph, Di Fenizio, Pietro Speroni, Dittrich, Peter
Motivation: Novel techniques are required to analyze computational models of intracellular processes as they increase steadily in size and complexity. The theory of chemical organizations has...
Can sugars be produced from fatty acids? A test case for pathway analysis tools (2008)
De Figueiredo, Luis F., Schuster, Stefan, Kaleta, Christoph, Fell, David A.
Motivation: In recent years, several methods have been proposed for determining metabolic pathways in an automated way based on network topology. The aim of this work is to analyse these methods by...
Integrated network reconstruction, visualization and analysis using YANAsquare (2007)
Schwarz, Roland, Liang, Chunguang, Kaleta, Christoph, Kühnel, Mark, Hoffmann, Eik, Kuznetsov, Sergei, ...
Abstract Background Modeling of metabolic networks includes tasks such as network assembly, network overview, calculation of metabolic fluxes and testing the robustness of the network. Results...
Chunguang Liang, Christoph Kaleta, Mark Kühnel, Eik Hoffmann, Sergei Kuznetsov, Michael Hecker, ...
© 2007 Schwarz et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License
Integrated network reconstruction, visualization and analysis using YANAsquare
Schwarz, Roland, Liang, Chunguang, Kaleta, Christoph, Kühnel, Mark, Hoffmann, Eik, Kuznetsov, Sergei, ...
Phenotype prediction in regulated metabolic networks
Kaleta, Christoph, Centler, Florian, Di Fenizio, Pietro Speroni, Dittrich, Peter
Using chemical organization theory for model checking
Kaleta, Christoph, Richter, Stephan, Dittrich, Peter
Motivation: The increasing number and complexity of biomodels makes automatic procedures for checking the models' properties and quality necessary. Approaches like elementary mode analysis, flux...