die zum Gelingen dieser Arbeit beigetragen haben: (2009)
Vorgelegt Der, Fakultät Für Chemie, Mag Michael Wolfinger, Ingrid Abfalter, Stephan Bernhart, ...
wie DNA, RNA oder Proteine bilden die molekulare Basis aller bekannten Lebensformen. Die Möglichkeit von Biopolymeren, in eine wohldefinierte native Struktur zu falten stellt eine Notwendigkeit für...
The footprint sorting problem (2008)
Claudia Fried, Wim Hordijk, Sonja J. Prohaska, Claus R. Stadler, Peter F. Stadler
Phylogenetic footprints are short pieces of non-coding DNA sequence in the vicinity of a gene that are conserved between evolutionary distant species. A seemingly simple problem is to sort footprints...
Stephan Steigele, Wolfgang Huber, Claudia Fried, Peter F. Stadler, Kay Nieselt
Background: Non-coding RNAs (ncRNAs) are in emerging focus for both computational analysis and experimental research resulting in a growing number of novel, non-protein coding transcripts with often...
Independent Hox-Cluster Duplications in (2008)
Claudia Fried, Sonja J. Prohaska, Peter F. Stadler
Abstract. The analysis of the publicly available Hox gene sequences from the sea lamprey Petromyzon marinus provides evidence that the Hox clusters in lampreys and other vertebrate species arose from...
an der Fakultät für Naturwissenschaften und Mathematik (2008)
Claudia Fried, Sonja J. Prohaska, Chi-hua Chiu, Christoph Flamm, Günther P. Wagner, ...
Dank an meine Eltern nicht nur dafür, dass sie mir mein Studium ermöglicht haben An dieser Stelle möchte ich mich herzlich bei all jenen bedanken, die mich bei meiner Arbeit unterstützt haben....
Vorgelegt Der, Fakultät Für Chemie, Mag Michael Wolfinger, Peter Stadler, Ivo Hofacker, ...
Dank an alle, die zum Gelingen dieser Arbeit beigetragen haben:
Discovery of Transcription Factor Binding Sites (2008)
Magistra rerum naturalium an der Fakult"at f"ur Naturwissenschaften und Mathematik
Structured RNAs in the ENCODE Selected Regions of the Human Genome (2007)
Washietl, Stefan, Pedersen, Jakob S., Korbel, Jan O., Fried, Claudia, Gruber, Andreas R., Hackermüller, Jörg, ...
RNAs Everywhere: Genome-Wide Annotation of Structured RNAs (2007)
Bompfünewerer, Athanasius F., Backofen, Rolf, Bernhart, Stephan H., Flamm, Christoph, Fried, Claudia, Fritzsch, Guido, ...
The expansion of the metazoan microRNA repertoire (2006)
Hertel, Jana, Lindemeyer, Manuela, Missal, Kristin, Fried, Claudia, Tanzer, Andrea, Flamm, Christoph, ...
Abstract Background MicroRNAs have been identified as crucial regulators in both animals and plants. Here we report on a comprehensive comparative study of all known miRNA families in animals. We...
The Expansion of the Metazoan MicroRNA Repertoire (2006)
Hertel, Jana, Lindemeyer, Manuela, Missal, Kristin, Fried, Claudia, Tanzer, Andrea, Flamm, Christoph, ...
The expansion of the metazoan microRNA repertoire (2006)
Jana Hertel, Manuela Lindemeyer, Kristin Missal, Claudia Fried, Andrea Tanzer, Ivo L. Hofacker, ...
MicroRNAs have been identified as crucial regulators in both animals and plants. Here we report on a comprehensive comparative study of all known miRNA families in animals. We expand the MicroRNA...
Multiple sequence alignments of partially coding nucleic acid sequences (2005)
Stocsits, Roman R, Hofacker, Ivo L, Fried, Claudia, Stadler, Peter F
Abstract Background High quality sequence alignments of RNA and DNA sequences are an important prerequisite for the comparative analysis of genomic sequence data. Nucleic acid sequences, however,...
zur Erlangung des akademischen Grades (2005)
Vorgelegt Der, Fakultät Für Chemie, Mag Ingrid, G. Abfalter, Peter Stadler, ...
Dank an alle,
Bmc Bioinformatics, Roman R Stocsits, Ivo L Hofacker, Claudia Fried, Peter F Stadler, Open Access, ...
Software Multiple sequence alignments of partially coding nucleic acid sequences
Multiple sequence alignments of partially coding nucleic acid sequences (2005)
Roman R. Stocsits, Ivo L. Hofacker, Claudia Fried, Peter F. Stadler, Peter F. Stadler
Background: High quality sequence alignments of RNA and DNA sequences are an important prerequisite for the comparative analysis of genomic sequence data. Nucleic acid sequences, however, exhibit a...
Multiple Sequence Alignments of Partially Coding Nucleic Acid Sequences (2005)
Stocsits, Roman R., Hofacker, Ivo L., Fried, Claudia, Stadler, Peter F.
Wagner, Günter P., Takahashi, Kazuhiko, Lynch, Vincent, Prohaska, Sonja J., Fried, Claudia, Stadler, Peter F., ...
Divergence of Conserved Non-Coding Sequences: Rate Estimates and Relative Rate Tests (2004)
Wagner, Günter P., Fried, Claudia, Prohaska, Sonja J., Stadler, Peter F.
Stadler, Peter F., Fried, Claudia, Prohaska, Sonja J., Bailey, Wendy J., Misof, Bernhard Y., Ruddle, Frank H., ...
The Footprint Sorting Problem (2004)
Fried, Claudia, Hordijk, Wim, Prohaska, Sonja J., Stadler, Claus R., Stadler, Peter F.
The Shark HoxN cluster is homologous to the Human HoxD cluster (2004)
Prohaska, Sonja J., Fried, Claudia, Amemiya, Chris T., Ruddle, Frank H., Wagner, Günter P., Stadler, Peter F.
Bichir HoxA Cluster Sequence Reveals Surprising Trends in Ray-Finned Fish Genomic Evolution (2004)
Chiu, C-H., Dewar, Ken, Wagner, Günter P., Takahashi, Kazuhiko, Ruddle, Frank, Ledje, Christina, ...
Divergence of Conserved Non-Coding Sequences: Rate Estimates and Relative Rate Tests (2004)
Wagner, Günter P., Fried, Claudia, Prohaska, Sonja J., Stadler, Peter F.
In many eukaryotic genomes only a small fraction of the DNA codes for proteins but the non-protein coding DNA harbors important genetic elements directing the development and the physiology of the...
Divergence of Conserved Non-Coding Sequences: Rate Estimates and Relative Rate Tests (2004)
Wagner, Günter P., Fried, Claudia, Prohaska, Sonja J., Stadler, Peter F.
In many eukaryotic genomes only a small fraction of the DNA codes for proteins, but the non-protein coding DNA harbors important genetic elements directing the development and the physiology of the...
Bichir HoxA Cluster Sequence Reveals Surprising Trends in Ray-Finned Fish Genomic Evolution (2004)
Chiu, Chi-hua, Dewar, Ken, Wagner, Günter P., Takahashi, Kazuhiko, Ruddle, Frank, Ledje, Christina, ...
The study of Hox clusters and genes provides insights into the evolution of genomic regulation of development. Derived ray-finned fishes (Actinopterygii, Teleostei) such as zebrafish and pufferfish...
Divergence of Conserved Non-Coding Sequences: Rate Estimates and Relative Rate Tests (2004)
Wagner, Günter P., Fried, Claudia, Prohaska, Sonja J., Stadler, Peter F.
In many eukaryotic genomes only a small fraction of the DNA codes for proteins but the non-protein coding DNA harbors important genetic elements directing the development and the physiology of the...
Phylogenetic footprint patterns in large gene clusters (2003)
Sonja J. Prohaska, Claudia Fried, Christoph Flamm, Peter F. Stadler
Introduction. Evolutionarily conserved non-coding genomic sequences represent a potentially rich source for the discovery of gene regulatory regions. Since these elements are subject to stabilizing...
Bichir HoxA Cluster Sequence Reveals Surprising Trends in Ray-Finned Fish Genomic Evolution
Chiu, Chi-hua, Dewar, Ken, Wagner, Günter P., Takahashi, Kazuhiko, Ruddle, Frank, Ledje, Christina, ...
The study of Hox clusters and genes provides insights into the evolution of genomic regulation of development. Derived ray-finned fishes (Actinopterygii, Teleostei) such as zebrafish and pufferfish...
Multiple sequence alignments of partially coding nucleic acid sequences
Stocsits, Roman R, Hofacker, Ivo L, Fried, Claudia, Stadler, Peter F
The expansion of the metazoan microRNA repertoire
Hertel, Jana, Lindemeyer, Manuela, Missal, Kristin, Fried, Claudia, Tanzer, Andrea, Flamm, Christoph, ...
Bichir HoxA Cluster Sequence Reveals Surprising Trends in Ray-Finned Fish Genomic Evolution
Chiu, Chi-hua, Dewar, Ken, Wagner, Günter P., Takahashi, Kazuhiko, Ruddle, Frank, Ledje, Christina, ...
The study of Hox clusters and genes provides insights into the evolution of genomic regulation of development. Derived ray-finned fishes (Actinopterygii, Teleostei) such as zebrafish and pufferfish...