De novo transcriptome assembly with ABySS (2009)
Birol, Inanç, Jackman, Shaun D., Nielsen, Cydney B., Qian, Jenny Q., Varhol, Richard, Stazyk, Greg, ...
Motivation: Whole transcriptome shotgun sequencing data from non-normalized samples offer unique opportunities to study the metabolic states of organisms. One can deduce gene expression levels using...
Determinants of targeting by endogenous and exogenous microRNAs and siRNAs (2007)
Nielsen, Cydney B., Shomron, Noam, Sandberg, Rickard, Hornstein, Eran, Kitzman, Jacob, Burge, Christopher B
Vertebrate mRNAs are frequently targeted for post-transcriptional repression by microRNAs (miRNAs) through mechanisms involving pairing of 3′ UTR seed matches to bases at the 5′ end of miRNAs....
Patterns of Intron Gain and Loss in Fungi (2004)
Cydney B. Nielsen, Brad Friedman, Bruce Birren, Christopher B. Burge, James E. Galagan
A comparative study of four fungal genomes reveals the patterns of intron gain and loss over several hundred million years of evolution.
Patterns of Intron Gain and Loss in Fungi (2004)
Cydney B. Nielsen, Brad Friedman, Bruce Birren, Christopher B. Burge, James E. Galagan
Little is known about the patterns of intron gain and loss or the relative contributions of these two processes to gene evolution. To investigate the dynamics of intron evolution, we analyzed...
Patterns of Intron Gain and Loss in Fungi
Nielsen, Cydney B, Friedman, Brad, Birren, Bruce, Burge, Christopher B, Galagan, James E
Little is known about the patterns of intron gain and loss or the relative contributions of these two processes to gene evolution. To investigate the dynamics of intron evolution, we analyzed...
Patterns of Intron Gain and Loss in Fungi
Nielsen, Cydney B, Friedman, Brad, Birren, Bruce, Burge, Christopher B, Galagan, James E
Little is known about the patterns of intron gain and loss or the relative contributions of these two processes to gene evolution. To investigate the dynamics of intron evolution, we analyzed...
Determinants of targeting by endogenous and exogenous microRNAs and siRNAs
Nielsen, Cydney B., Shomron, Noam, Sandberg, Rickard, Hornstein, Eran, Kitzman, Jacob, Burge, Christopher B
Vertebrate mRNAs are frequently targeted for post-transcriptional repression by microRNAs (miRNAs) through mechanisms involving pairing of 3′ UTR seed matches to bases at the 5′ end of miRNAs....