Cock, Peter J. A., Antao, Tiago, Chang, Jeffrey T., Chapman, Brad A., Cox, Cymon J., Dalke, Andrew, ...
Summary: The Biopython project is a mature open source international collaboration of volunteer developers, providing Python libraries for a wide range of bioinformatics problems. Biopython includes...
A. Jonathan Shaw, Ingo Holz, Cymon J. Cox, Bernard Goffinet
Phylogenetic relationships among the seven genera of the Hypopterygiaceae, represented by 14 of the 21 species recognized in the family, were reconstructed based on variation in nucleotide sequences...
Goffinet, Bernard, Wickett, Norman J., Werner, Olaf, Ros, Rosa Maria, Shaw, A. Jonathan, Cox, Cymon J.
Background and Aims The recent assembly of the complete sequence of the plastid genome of the model taxon Physcomitrella patens (Funariaceae, Bryophyta) revealed that a 71-kb fragment, encompassing...
Goffinet, Bernard, Wickett, Norman J., Werner, Olaf, Ros, Rosa Maria, Shaw, A. Jonathan, Cox, Cymon J.
Background and Aims The recent assembly of the complete sequence of the plastid genome of the model taxon Physcomitrella patens (Funariaceae, Bryophyta) revealed that a 71-kb fragment, encompassing...
Goffinet, Bernard, Wickett, Norman J., Werner, Olaf, Ros, Rosa Maria, Shaw, A. Jonathan, Cox, Cymon J.
Background and Aims The recent assembly of the complete sequence of the plastid genome of the model taxon Physcomitrella patens (Funariaceae, Bryophyta) revealed that a 71-kb fragment, encompassing...
Divergent and Reticulate Evolution in Closely Related Species of Sphagnum Section Subsecunda (2005)
A. Jonathan Shaw, Iwona Melosik, Cymon J. Cox, Sandra B. Boles
The Sphagnum subsecundum complex includes a group of closely related, morphologically intergrading species in section Subsecunda. Nucleotide sequences from six genes (four nuclear and two...
Phylogenetic Relationships Among Sphagnum Sections: Hemitheca, Isocladus, and Subsecunda (2004)
Jonathan Shaw, Cymon J. Cox, Sandra B. Boles
Sphagnum macrophyllum, S. pylaesii, and S. cyclophyllum are morphologically atypical in the genus Sphagnum and their systematic placement has been a source of controversy. The first is generally...
Phylogeny of the Moss Family Bryaceae Inferred from Chloroplast DNA Sequences and Morphology (2003)
Niklas Pedersen, Cymon J. Cox, Lars Hedenäs
Phylogenetic relationships within the moss family Bryaceae were studied using chloroplast DNA sequences (atpB-rbcL, rpl16 intron, rps4, and trnL-trnF region) and anatomical and morphological data....
A new species of Leskeodon (Daltoniaceae) from Ecuador (2002)
William R. Buck, A. Jonathan Shaw, Cymon J. Cox
Leskeodon caducifolius is described from recent collections made at a single site in a cloud forest in southern Ecuador. The species is distinctive in its small, caducous leaves and elongate, porose...
Goffinet, Bernard, Cox, Cymon J., Shaw, A. Jonathan, Hedderson, Terry A. J.
Phylogenetic analyses of nucleotide and amino acid sequences of the chloroplast protein coding generps4 were performed for 225 species of mosses, representing 84% of families recognized by...
Angela E. Newton, Cymon J. Cox, Jeffrey G. Duckett, John A. Wheeler, Bernard Goffinet, ...
Evolutionary relationships of mosses are still poorly understood, with family, order, and subclass circumscription and relationships remaining especially obscure. Over the past decade, a considerable...
Bernard Goffinet, Cymon J. Cox
The classification of the Bryopsida (mosses) has been based primarily on the variation of sporophytic characters i.e., architectural features of the peristome teeth that line the capsule mouth. Five...
Cymon J. Cox, Bernard Goffinet, Angela E. Newton, A. Jonathan Shaw
The diplolepideous-alternate peristome, when most highly developed, has endostome segments attached to a basal membrane and positioned alternate to the outer exostome teeth, with cilia often present...
Phylogeny and Evolution of Medical Species of Candida and Related Taxa: a Multigenic Analysis
Diezmann, Stephanie, Cox, Cymon J., Schönian, Gabriele, Vilgalys, Rytas J., Mitchell, Thomas G.
Hemiascomycetes are species of yeasts within the order Saccharomycetales. The order encompasses disparate genera with a variety of life styles, including opportunistic human pathogens (e.g., Candida...
Phylogeny and Evolution of Medical Species of Candida and Related Taxa: a Multigenic Analysis
Diezmann, Stephanie, Cox, Cymon J., Schönian, Gabriele, Vilgalys, Rytas J., Mitchell, Thomas G.
Hemiascomycetes are species of yeasts within the order Saccharomycetales. The order encompasses disparate genera with a variety of life styles, including opportunistic human pathogens (e.g., Candida...
Biopython: freely available Python tools for computational molecular biology and bioinformatics
Cock, Peter J. A., Antao, Tiago, Chang, Jeffrey T., Chapman, Brad A., Cox, Cymon J., Dalke, Andrew, ...
Summary: The Biopython project is a mature open source international collaboration of volunteer developers, providing Python libraries for a wide range of bioinformatics problems. Biopython includes...
The archaebacterial origin of eukaryotes
Cox, Cymon J., Foster, Peter G., Hirt, Robert P., Harris, Simon R., Embley, T. Martin
The origin of the eukaryotic genetic apparatus is thought to be central to understanding the evolution of the eukaryotic cell. Disagreement about the source of the relevant genes has spawned...