Van Iersel, Leo, Kelk, Steven, Rupp, Regula, Huson, Daniel
Phylogenetic trees are widely used to display estimates of how groups of species evolved. Each phylogenetic tree can be seen as a collection of clusters, subgroups of the species that evolved from a...
Johannes Fischer, Daniel Huson
Abstract. We consider lowest commmon ancestors (LCAs) in static directed acyclic graphs (dags). We first derive a new generalization of the definition of LCAs in trees, which is equally natural as...
Computing Galled Networks from Real Data (2009)
Huson, Daniel, Rupp, Regula, Berry, Vincent, Gambette, Philippe, Paul, Christophe
Developing methods for computing phylogenetic networks from biological data is an important problem posed by molecular evolution and much work is currently being undertaken in this area. Although...
Computing Galled Networks from Real Data (2009)
Huson, Daniel, Rupp, Regula, Berry, Vincent, Gambette, Philippe, Paul, Christophe
Developing methods for computing phylogenetic networks from biological data is an important problem posed by molecular evolution and much work is currently being undertaken in this area. Although...
Computing Galled Networks from Real Data (2009)
Huson, Daniel, Rupp, Regula, Berry, Vincent, Gambette, Philippe, Paul, Christophe
Developing methods for computing phylogenetic networks from biological data is an important problem posed by molecular evolution and much work is currently being undertaken in this area. Although...
Computing Galled Networks from Real Data (2009)
Huson, Daniel, Rupp, Regula, Berry, Vincent, Gambette, Philippe, Paul, Christophe
Developing methods for computing phylogenetic networks from biological data is an important problem posed by molecular evolution and much work is currently being undertaken in this area. Although...
Improved Layout of Phylogenetic Networks (2008)
Gambette, Philippe, Huson, Daniel
Split networks are increasingly being used in phylogenetic analysis. Usually, a simple equal angle algorithm is used to draw such networks, producing layouts that leave much room for improvement....
Improved Layout of Phylogenetic Networks (2008)
Gambette, Philippe, Huson, Daniel
Split networks are increasingly being used in phylogenetic analysis. Usually, a simple equal angle algorithm is used to draw such networks, producing layouts that leave much room for improvement....
Mike Steel, Daniel Huson, Peter J. Lockhart
Abstract.—Phylogenetic inference is well known to be problematic if both long and short branches occur together in the underlying tree. With biological data, correcting for this problem may require...
Palatnik, Javier F., Wollmann, Heike, Schommer, Carla, Schwab, Rebecca, Boisbouvier, Jerome, Rodriguez, Ramiro, ...
Functional evaluation of domain-domain interactions and human protein interaction networks (2006)
Schlicker, Andreas, Huthmacher, Carola, Ramírez, Fidel, Lengauer, Thomas, Albrecht, Mario, Huson, Daniel, ...
Large amounts of protein and domain interaction data are being produced by experimental high-throughput techniques and computational approaches. To gain insight into the value of the provided data,...
Conservation and divergence of microRNA families in plants (2005)
Dezulian, Tobias, Palatnik, Javier F, Huson, Daniel, Weigel, Detlef
Abstract Background MicroRNAs (miRNAs) are 20 to 24 nucleotides short RNAs involved in posttranscriptional regulation in plants and animals. MiRNAs are processed from larger precursors with extensive...
Comparative analysis of four Campylobacterales. (2004)
Eppinger,M., Baar,Claudia, Raddatz,Günter, Huson,Daniel, Schuster,Stephan
Comparative genome analysis can be used to identify species-specific genes and gene clusters, and analysis of these genes can give an insight into the mechanisms involved in a specific bacteria-host...
Comparative analysis of four Campylobacterales. (2004)
Eppinger, M., Baar, Claudia, Raddatz, Günter, Huson, Daniel, Schuster, Stephan
Comparative genome analysis can be used to identify species-specific genes and gene clusters, and analysis of these genes can give an insight into the mechanisms involved in a specific bacteria-host...
Distance Corrections on Recombinant Sequences (2003)
David Bryant, Daniel Huson, Tobias Kloepper, Kay Nieselt-struwe
Sequences that have evolved under recombination have a `mosaic' structure, with di#erent portions of the alignment having evolved on di#erent trees. In this paper we study the e#ect of mosaic...
Distance corrections for recombinant sequences (2003)
David Bryant, Daniel Huson, Kay Nieselt-struwe
Abstract. Sequences that have evolved under recombination have a ‘mosaic ’ structure, with different portions of the alignment having evolved on different trees. In this paper we study the effect...
How Molecules Evolve in Eubacteria (2000)
Lockhart, Peter J., Huson, Daniel, Maier, Uwe, Fraunholz, Martin J., Van De Peer§, Yves, Barbrook, Adrian C., ...
Invariable Sites Models and Their Use in Phylogeny Reconstruction (2000)
Steel, Mike, Huson, Daniel, Lockhart, Peter J.
Phylogenetic inference is well known to be problematic if both long and short branches occur together in the underlying tree. With biological data, correcting for this problem may require...
Hybrid Tree Reconstruction Methods (1998)
Daniel Huson, Scott Nettles, Kenneth Rice, Tandy Warnow, Shibu Yooseph
A major computational problem in Biology is the reconstruction of evolutionary trees for species sets, and accuracy is measured by comparing the topologies of the reconstructed tree and the model...
The Disk-Covering Method for Tree Reconstruction (1998)
R. Battiti, Daniel Huson, Scott Nettles, Laxmi Parida, Tandy Warnow, Shibu Yooseph
Evolutionary tree reconstruction is a very important step in many biological research problems, and yet is extremely difficult for a variety of computational, statistical, and scientific reasons. In...
Hybrid Tree Reconstruction Methods (1998)
Daniel Huson, Scott Nettles, Kenneth Rice, Tandy J. Warnow, Shibu Yooseph
A major computational problem in Biology is the reconstruction of evolutionary trees for species sets, and accuracy is measured by comparing the topologies of the reconstructed tree and the model...