MacCallum, Iain, Przybylski, Dariusz, Gnerre, Sante, Burton, Joshua, Shlyakhter, Ilya, Gnirke, Andreas, ...
Abstract We demonstrate that genome sequences approaching finished quality can be generated from short paired reads. Using 36 base (fragment) and 26 base (jumping) reads from five microbial genomes...
Powerful fusion: PSI-BLAST and consensus sequences (2008)
Przybylski, Dariusz, Rost, Burkhard
Motivation: A typical PSI-BLAST search consists of iterative scanning and alignment of a large sequence database during which a scoring profile is progressively built and refined. Such a profile can...
Consensus sequences improve PSI-BLAST through mimicking profile-profile alignments (2007)
Przybylski, Dariusz, Rost, Burkhard
Sequence alignments may be the most fundamental computational resource for molecular biology. The best methods that identify sequence relatedness through profile–profile comparisons are much slower...
Consensus sequences improve PSI-BLAST through mimicking profile-profile alignments (2007)
Przybylski, Dariusz, Rost, Burkhard
Sequence alignments may be the most fundamental computational resource for molecular biology. The best methods that identify sequence relatedness through profile–profile comparisons are much slower...
Dariusz Przybylski, Burkhard Rost
Sequence alignments may be the most fundamental computational resource for molecular biology. The best methods that identify sequence relatedness through profile–profile comparisons are much slower...
Prediction-based improvements of protein fold recognition and alignment quality (2005)
Department: Biochemistry and Molecular Biophysics.
Predicting transmembrane beta-barrels in proteomes (2004)
Bigelow, Henry R., Petrey, Donald S., Liu, Jinfeng, Przybylski, Dariusz, Rost, Burkhard
Very few methods address the problem of predicting beta‐barrel membrane proteins directly from sequence. One reason is that only very few high‐resolution structures for transmembrane...
EVA: evaluation of protein structure prediction servers (2003)
Koh, Ingrid Y. Y., Eyrich, Volker A., Marti-Renom, Marc A., Przybylski, Dariusz, Madhusudhan, Mallur S., Eswar, Narayanan, ...
EVA (http://cubic.bioc.columbia.edu/eva/) is a web server for evaluation of the accuracy of automated protein structure prediction methods. The evaluation is updated automatically each week, to cope...
Eva: continuous automatic evaluation of protein structure prediction servers (2001)
Volker A. Eyrich, Dariusz Przybylski, Mallur S, András Fiser, Florencio Pazos, ...
Summary: Evaluation of protein structure prediction methods is difficult and timeconsuming. Here, we describe EVA, a web server for assessing protein structure prediction methods, in an automated,...
EVA: continuous automatic evaluation of protein structure prediction servers (2001)
Eyrich, Volker A., Martí-Renom, Marc A., Przybylski, Dariusz, Madhusudhan, Mallur S., Fiser, András, Pazos, Florencio, ...
Summary: Evaluation of protein structure prediction methods is difficult and time-consuming. Here, we describe EVA, a web server for assessing protein structure prediction methods, in an automated,...
EVA: evaluation of protein structure prediction servers
Koh, Ingrid Y. Y., Eyrich, Volker A., Marti-Renom, Marc A., Przybylski, Dariusz, Madhusudhan, Mallur S., Eswar, Narayanan, ...
EVA (http://cubic.bioc.columbia.edu/eva/) is a web server for evaluation of the accuracy of automated protein structure prediction methods. The evaluation is updated automatically each week, to cope...
Predicting transmembrane beta-barrels in proteomes
Bigelow, Henry R., Petrey, Donald S., Liu, Jinfeng, Przybylski, Dariusz, Rost, Burkhard
Very few methods address the problem of predicting beta-barrel membrane proteins directly from sequence. One reason is that only very few high-resolution structures for transmembrane beta-barrel...
EVA: evaluation of protein structure prediction servers
Koh, Ingrid Y. Y., Eyrich, Volker A., Marti-Renom, Marc A., Przybylski, Dariusz, Madhusudhan, Mallur S., Eswar, Narayanan, ...
EVA (http://cubic.bioc.columbia.edu/eva/) is a web server for evaluation of the accuracy of automated protein structure prediction methods. The evaluation is updated automatically each week, to cope...
Predicting transmembrane beta-barrels in proteomes
Bigelow, Henry R., Petrey, Donald S., Liu, Jinfeng, Przybylski, Dariusz, Rost, Burkhard
Very few methods address the problem of predicting beta-barrel membrane proteins directly from sequence. One reason is that only very few high-resolution structures for transmembrane beta-barrel...
Consensus sequences improve PSI-BLAST through mimicking profile–profile alignments
Przybylski, Dariusz, Rost, Burkhard
Sequence alignments may be the most fundamental computational resource for molecular biology. The best methods that identify sequence relatedness through profile–profile comparisons are much slower...