Improving Gene-finding in Chlamydomonas reinhardtii:GreenGenie2 (2009)
Kwan, Alan L, Li, Linya, Kulp, David C, Dutcher, Susan K, Stormo, Gary D
Abstract Background The availability of whole-genome sequences allows for the identification of the entire set of protein coding genes as well as their regulatory regions. This can be accomplished...
Causal inference of regulator-target pairs by gene mapping of expression phenotypes (2006)
Kulp, David C, Jagalur, Manjunatha
Abstract Background Correlations between polymorphic markers and observed phenotypes provide the basis for mapping traits in quantitative genetics. When the phenotype is gene expression, then loci...
BMC Genomics Methodology article (2006)
David C Kulp, Manjunatha Jagalur
Causal inference of regulator-target pairs by gene mapping of expression phenotypes
DOI: 10.1093/bioinformatics/btg1044 (2003)
Hui Wang, Earl Hubbell, Jing-shan Hu, Gangwu Mei, Melissa Cline, Gang Lu, ...
Vol. 19 Suppl. 1 2003, pages i315–i322
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Protein-coding gene structure prediction using generalized hidden Markov models / (2003)
Typescript.
Gene structure-based splice variant deconvolution using a microarry platform (2003)
Wang, Hui, Hubbell, Earl, Hu, Jing-shan, Mei, Gangwu, Cline, Melissa, Lu, Gang, ...
Motivation: Alternative splicing allows a single gene to generate multiple mRNAs, which can be translated into functionally and structurally diverse proteins. One gene can have multiple variants...