David Lindgren

Normalization of Illumina Infinium whole-genome SNP data improves copy number estimates and allelic intensity ratios (2008)

Staaf, Johan, Vallon-Christersson, Johan, Lindgren, David, Juliusson, Gunnar, Rosenquist, Richard, Höglund, Mattias, ...

Abstract Background Illumina Infinium whole genome genotyping (WGG) arrays are increasingly being applied in cancer genomics to study gene copy number alterations and allele-specific aberrations such...

Segmentation-based detection of allelic imbalance and loss-of-heterozygosity in cancer cells using whole genome SNP arrays (2008)

Staaf, Johan, Lindgren, David, Vallon-Christersson, Johan, Isaksson, Anders, Göransson, Hanna, Juliusson, Gunnar, ...

Abstract We present a strategy for detection of loss-of-heterozygosity and allelic imbalance in cancer cells from whole genome single nucleotide polymorphism genotyping data. Using a dilution series...

Recurrent and multiple bladder tumors show conserved expression profiles (2008)

Lindgren, David, Gudjonsson, Sigurdur, Jee, Kowan, Liedberg, Fredrik, Aits, Sonja, Andersson, Anna, ...

Abstract Background Urothelial carcinomas originate from the epithelial cells of the inner lining of the bladder and may appear as single or as multiple synchronous tumors. Patients with urothelial...

Interactive Poster: Interactive Visualization approaches to the Analysis of System Identification Data (2008)

Jimmy Johansson, Patric Ljung, David Lindgren, Matthew Cooper

a,b) One region with large residuals c,d) Two regions with large residuals Figure 1: A semi-immersive display showing the relationship between the model input, the residual (the error between the...

Tiling resolution array CGH and high density expression profiling of urothelial carcinomas delineate genomic amplicons and candidate target genes specific for advanced tumors (2008)

Heidenblad, Markus, Lindgren, David, Jonson, Tord, Liedberg, Fredrik, Veerla, Srinivas, Chebil, Gunilla, ...

Abstract Background Urothelial carcinoma (UC) is characterized by nonrandom chromosomal aberrations, varying from one or a few changes in early-stage and low-grade tumors, to highly rearranged...

Distinct mitotic segregation errors mediate chromosomal instability in aggressive urothelial cancers. (2007)

Jin, Yuesheng, Stewénius, Ylva, Lindgren, David, Frigyesi, Attila, Calcagnile, Olga, Jonson, Tord, ...

Abstract is not available

Interactive Analysis of Time-Varying Systems using Volume Graphics (2007)

Jimmy Johansson, David Lindgren, Matthew Cooper, Lennart Ljung, Jimmy Johansson, ...

Abstract — We show how 3-dimensional volume graphics can be used as a tool in system identification. Time-dependent dynamics often leave a significant residual with linear, timeinvariant models....

MOLECULAR PROFILING OF UROTHELIAL CARCINOMA (2006)

Lindgren, David

The general aim of this thesis was to molecularly characterize urothelial carcinoma (UC) at the transcriptional level using gene expression microarrays to improve the classification and pathogenetic...

Independent component analysis reveals new and biologically significant structures in micro array data (2006)

Frigyesi, Attila, Veerla, Srinivas, Lindgren, David, Höglund, Mattias

Abstract Background An alternative to standard approaches to uncover biologically meaningful structures in micro array data is to treat the data as a blind source separation (BSS) problem. BSS...

Microarray analyses reveal strong influence of DNA copy number alterations on the transcriptional patterns in pancreatic cancer: implications for the interpretation of genomic amplifications. (2005)

Heidenblad, Markus, Lindgren, David, Veltman, Joris A, Jonson, Tord, Mahlamäki, Eija H, Gorunova, Ludmila, ...

Abstract is not available

Molecular signatures in childhood acute leukemia and their correlations to expression patterns in normal hematopoietic subpopulations. (2005)

Andersson, Anna, Olofsson, Tor, Lindgren, David, Nilsson, Bjorn, Ritz, Cecilia, Edén, Patrik, ...

Abstract is not available

Projection techniques for classification and identification / (2005)

Lindgren, David.

Thesis (doctoral)--Linköping University, 2005.

Interactive Visualization as a Tool for Analysing Time-Varying and Non-Linear Systems (2005)

Jimmy Johansson, David Lindgren, Matthew Cooper, Lennart Ljung

This paper proposes advanced visualization and interaction techniques as a support for the analysis of system identification data. Non-linear or timedependent dynamics often leave a significant...

Projection techniques for classification and identification / (2005)

Lindgren, David.

Erratum inserted.

Tamarack falls away / (2004)

Lindgren, David.

Thesis (M.A.)--California State University, Northridge, 2004.

Estimation of wheel slip for improved navigation of off-road autonomous vehicles / (2001)

Lindgren, David.

Supervisors: Dr. Penny Probert-Smith, Dr. Tony Hague and Prof. John Marchant.

Molecular signatures in childhood acute leukemia and their correlations to expression patterns in normal hematopoietic subpopulations

Andersson, Anna, Olofsson, Tor, Lindgren, David, Nilsson, Björn, Ritz, Cecilia, Edén, Patrik, ...

Global expression profiles of a consecutive series of 121 childhood acute leukemias (87 B lineage acute lymphoblastic leukemias, 11 T cell acute lymphoblastic leukemias, and 23 acute myeloid...

Independent component analysis reveals new and biologically significant structures in micro array data

Frigyesi, Attila, Veerla, Srinivas, Lindgren, David, Höglund, Mattias

Molecular signatures in childhood acute leukemia and their correlations to expression patterns in normal hematopoietic subpopulations

Andersson, Anna, Olofsson, Tor, Lindgren, David, Nilsson, Björn, Ritz, Cecilia, Edén, Patrik, ...

Global expression profiles of a consecutive series of 121 childhood acute leukemias (87 B lineage acute lymphoblastic leukemias, 11 T cell acute lymphoblastic leukemias, and 23 acute myeloid...

Independent component analysis reveals new and biologically significant structures in micro array data

Frigyesi, Attila, Veerla, Srinivas, Lindgren, David, Höglund, Mattias

Tiling resolution array CGH and high density expression profiling of urothelial carcinomas delineate genomic amplicons and candidate target genes specific for advanced tumors

Heidenblad, Markus, Lindgren, David, Jonson, Tord, Liedberg, Fredrik, Veerla, Srinivas, Chebil, Gunilla, ...

Recurrent and multiple bladder tumors show conserved expression profiles

Lindgren, David, Gudjonsson, Sigurdur, Jee, Kowan Ja, Liedberg, Fredrik, Aits, Sonja, Andersson, Anna, ...

Normalization of Illumina Infinium whole-genome SNP data improves copy number estimates and allelic intensity ratios

Staaf, Johan, Vallon-Christersson, Johan, Lindgren, David, Juliusson, Gunnar, Rosenquist, Richard, Höglund, Mattias, ...

Segmentation-based detection of allelic imbalance and loss-of-heterozygosity in cancer cells using whole genome SNP arrays

Staaf, Johan, Lindgren, David, Vallon-Christersson, Johan, Isaksson, Anders, Göransson, Hanna, Juliusson, Gunnar, ...

A strategy is presented for detection of loss-of-heterozygosity and allelic imbalance in cancer cells from whole genome SNP genotyping data.