David N. Mastronarde

Fast multiple alignment of ungapped DNA sequences using information theory and a relaxation method (2007)

Thomas D. Schneider, David N. Mastronarde

An information theory based multiple alignment ("Malign") method was used to align the DNA binding sequences of the OxyR and Fis proteins, whose sequence conservation is so spread out that...

Golgi structure in three dimensions: functional insights from the normal rat kidney cell (1999)

Mark S. Ladinsky, David N. Mastronarde, J. Richard Mcintosh, Kathryn E. Howell, L. Andrew Staehelin

Abstract. Three-dimensional reconstructions of portions of the Golgi complex from cryofixed, freeze-substituted normal rat kidney cells have been made by dual-axis, high-voltage EM tomography at...

throughout the Saccharomyces cerevisiae Cell Cycle by Three-Dimensional Reconstruction from Electron Micrographs of Nuclear Envelopes (1997)

Mark Winey, Defne Yarar, Thomas H. Giddings, David N. Mastronarde

number of nuclear pore complexes (NPCs) in individual nuclei of the yeast Saccharomyces cerevisiae was determined by computer-aided reconstruction of entire nuclei from electron micrographs of...

Nuclear Pore Complex Number and Distribution throughout the Saccharomyces cerevisiae Cell Cycle by Three-Dimensional Reconstruction from Electron Micrographs of Nuclear Envelopes

Winey, Mark, Yarar, Defne, Giddings, Thomas H., Mastronarde, David N.

The number of nuclear pore complexes (NPCs) in individual nuclei of the yeast Saccharomyces cerevisiae was determined by computer-aided reconstruction of entire nuclei from electron micrographs of...

Organellar relationships in the Golgi region of the pancreatic beta cell line, HIT-T15, visualized by high resolution electron tomography

Marsh, Brad J., Mastronarde, David N., Buttle, Karolyn F., Howell, Kathryn E., McIntosh, J. Richard

The positional relationships among all of the visible organelles in a densely packed region of cytoplasm from an insulin secreting, cultured mammalian cell have been analyzed in three dimensions...

Three-Dimensional Analysis of Syncytial-Type Cell Plates during Endosperm Cellularization Visualized by High Resolution Electron Tomography W⃞

Otegui, Marisa S., Mastronarde, David N., Kang, Byung-Ho, Bednarek, Sebastian Y., Staehelin, L. Andrew

The three-dimensional architecture of syncytial-type cell plates in the endosperm of Arabidopsis has been analyzed at ∼6-nm resolution by means of dual-axis high-voltage electron tomography of...

Three-dimensional Ultrastructure of Saccharomyces cerevisiae Meiotic SpindlesD⃞V⃞

Winey, Mark, Morgan, Garry P., Straight, Paul D., Giddings, Thomas H., Mastronarde, David N.

Meiotic chromosome segregation leads to the production of haploid germ cells. During meiosis I (MI), the paired homologous chromosomes are separated. Meiosis II (MII) segregation leads to the...

Nuclear Pore Complex Number and Distribution throughout the Saccharomyces cerevisiae Cell Cycle by Three-Dimensional Reconstruction from Electron Micrographs of Nuclear Envelopes

Winey, Mark, Yarar, Defne, Giddings, Thomas H., Mastronarde, David N.

The number of nuclear pore complexes (NPCs) in individual nuclei of the yeast Saccharomyces cerevisiae was determined by computer-aided reconstruction of entire nuclei from electron micrographs of...

Organellar relationships in the Golgi region of the pancreatic beta cell line, HIT-T15, visualized by high resolution electron tomography

Marsh, Brad J., Mastronarde, David N., Buttle, Karolyn F., Howell, Kathryn E., McIntosh, J. Richard

The positional relationships among all of the visible organelles in a densely packed region of cytoplasm from an insulin secreting, cultured mammalian cell have been analyzed in three dimensions...

Three-Dimensional Analysis of Syncytial-Type Cell Plates during Endosperm Cellularization Visualized by High Resolution Electron Tomography W⃞

Otegui, Marisa S., Mastronarde, David N., Kang, Byung-Ho, Bednarek, Sebastian Y., Staehelin, L. Andrew

The three-dimensional architecture of syncytial-type cell plates in the endosperm of Arabidopsis has been analyzed at ∼6-nm resolution by means of dual-axis high-voltage electron tomography of...

Three-dimensional Ultrastructure of Saccharomyces cerevisiae Meiotic SpindlesD⃞V⃞

Winey, Mark, Morgan, Garry P., Straight, Paul D., Giddings, Thomas H., Mastronarde, David N.

Meiotic chromosome segregation leads to the production of haploid germ cells. During meiosis I (MI), the paired homologous chromosomes are separated. Meiosis II (MII) segregation leads to the...

Golgi Structure in Three Dimensions: Functional Insights from the Normal Rat Kidney Cell

Ladinsky, Mark S., Mastronarde, David N., McIntosh, J. Richard, Howell, Kathryn E., Staehelin, L. Andrew

Three-dimensional reconstructions of portions of the Golgi complex from cryofixed, freeze-substituted normal rat kidney cells have been made by dual-axis, high-voltage EM tomography at ∼7-nm...