flowCore: a Bioconductor package for high throughput flow cytometry (2009)
Hahne, Florian, LeMeur, Nolwenn, Brinkman, Ryan R, Ellis, Byron, Haaland, Perry, Sarkar, Deepayan, ...
Abstract Background Recent advances in automation technologies have enabled the use of flow cytometry for high throughput screening, generating large complex data sets often in clinical trials or...
iFlow: A Graphical User Interface for Flow Cytometry Tools in Bioconductor (2009)
Kyongryun Lee, Florian Hahne, Deepayan Sarkar, Robert Gentleman
Flow cytometry (FCM) has become an important analysis technology in health care and medical research, but the large volume of data produced by modern high-throughput experiments has presented...
High throughput flow cytometry analysis with Bioconductor (2009)
Le Meur, Nolwenn, Hahne, Florian, Sarkar, Deepayan, Ellis, Byron, Spidlen, Josef, Brinkman, Ryan R, ...
Recent advances in automation technologies have enabled the use of flow cytometry high content screening (FH-HCS), in both basic and clinical research, generating large complex data sets with any...
High throughput flow cytometry analysis with Bioconductor (2009)
Le Meur, Nolwenn, Hahne, Florian, Sarkar, Deepayan, Ellis, Byron, Spidlen, Josef, Brinkman, Ryan R, ...
Recent advances in automation technologies have enabled the use of flow cytometry high content screening (FH-HCS), in both basic and clinical research, generating large complex data sets with any...
Kurt Hornik, Friedrich Leisch, Achim Zeileis (eds, Deepayan Sarkar
Trellis Graphics is implemented in S-PLUS using the traditional S graphics engine. In contrast, lattice, the implementation of Trellis Graphics in R, uses grid graphics as the underlying mechanism....
Trellis Graphics is implemented in S-PLUS using the traditional S graphics engine. In contrast, Lattice, the implementation of Trellis Graphics in R, uses Grid as the underlying graphics mechanism....
Coverage and error models of protein-protein interaction data by directed graph analysis (2007)
Chiang, Tony, Scholtens, Denise, Sarkar, Deepayan, Gentleman, Robert, Huber, Wolfgang
Abstract Using a directed graph model for bait to prey systems and a multinomial error model, we assessed the error statistics in all published large-scale datasets for Saccharomyces cerevisiae and...
On the analysis of optical mapping data / (2006)
Thesis (Ph.D.)--University of Wisconsin--Madison, 2006
On the analysis of optical mapping data / (2006)
Thesis (Ph.D.)--University of Wisconsin--Madison, 2006
Detecting differential gene expression with a semiparametric hierarchical mixture method (2004)
Newton, Michael A., Noueiry, Amine, Sarkar, Deepayan, Ahlquist, Paul
Mixture modeling provides an effective approach to the differential expression problem in microarray data analysis. Methods based on fully parametric mixture models are available, but lack of fit in...
Parametric Empirical Bayes Methods for Microarrays (2003)
Christina Kendziorski, Deepayan Sarkar, Meng Chen, Michael Newton
Coverage and error models of protein-protein interaction data by directed graph analysis
Chiang, Tony, Scholtens, Denise, Sarkar, Deepayan, Gentleman, Robert, Huber, Wolfgang
Directed graph and multinomial error models were used to assess and characterize the error statistics in all published large-scale datasets for Saccharomyces cerevisiae