Gangwar, Deepti, Kalita, Mridul K, Gupta, Dinesh, Chauhan, Virander S, Mohmmed, Asif
Abstract Background The P-loop NTPases constitute one of the largest groups of globular protein domains that play highly diverse functional roles in most of the organisms. Even with the availability...
ProtVirDB: a database of protozoan virulent proteins (2009)
Ramana, Jayashree, Gupta, Dinesh
Summary: ProtVirDB is a comprehensive and user-friendly web-based knowledgebase of virulent proteins belonging to protozoan species. The database will facilitate research and provide an integrated...
VirulentPred: a SVM based prediction method for virulent proteins in bacterial pathogens (2008)
Abstract Background Prediction of bacterial virulent protein sequences has implications for identification and characterization of novel virulence-associated factors, finding novel drug/vaccine...
Virtual high throughput screening (vHTS) - A perspective (2008)
Sangeetha Subramaniam, Monica Mehrotra, Dinesh Gupta
With the exponential rise in the number of viable novel drug targets, computational methods are being increasingly applied to accelerate the drug discovery process. Virtual High Throughput Screening...
ProtRepeatsDB: a database of amino acid repeats in genomes (2006)
Kalita, Mridul K, Ramasamy, Gowthaman, Duraisamy, Sekhar, Chauhan, Virander S, Gupta, Dinesh
Abstract Background Genome wide and cross species comparisons of amino acid repeats is an intriguing problem in biology mainly due to the highly polymorphic nature and diverse functions of amino acid...
A database for Plasmodium falciparum protein models (2005)
Ramasamy Gowthaman, Duraisamy Sekhar, Mridul Kumar Kalita, Dinesh Gupta
There is an urgent need for developing alternate strategies to combat Malaria caused by Plasmodium falciparum (P. falciparum) because of growing drug resistance and increased incidents of infection...
Ravi Chandra, Beeram, Gowthaman, Ramasamy, Raj Akhouri, Reetesh, Gupta, Dinesh, Sharma, Amit
We have conducted a survey of proline‐rich (PxxP) motifs in the proteomes of human, mouse, yeast, Mycobacterium tuberculosis and Plasmodium falciparum. Our analyses reveal a strikingly high...
Chandra, Beeram Ravi, Gowthaman, Ramasamy, Akhouri, Reetesh Raj, Gupta, Dinesh, Sharma, Amit
We have conducted a survey of proline-rich (PxxP) motifs in the proteomes of human, mouse, yeast, Mycobacterium tuberculosis and Plasmodium falciparum. Our analyses reveal a strikingly high...
Chandra, Beeram Ravi, Gowthaman, Ramasamy, Akhouri, Reetesh Raj, Gupta, Dinesh, Sharma, Amit
We have conducted a survey of proline-rich (PxxP) motifs in the proteomes of human, mouse, yeast, Mycobacterium tuberculosis and Plasmodium falciparum. Our analyses reveal a strikingly high...
Bahl, Amit, Brunk, Brian, Crabtree, Jonathan, Fraunholz, Martin J., Gajria, Bindu, Grant, Gregory R., ...
PlasmoDB (http://PlasmoDB.org) is the official database of the Plasmodium falciparum genome sequencing consortium. This resource incorporates the recently completed P. falciparum genome sequence and...
Bahl, Amit, Brunk, Brian, Coppel, Ross L., Crabtree, Jonathan, Diskin, Sharon J., Fraunholz, Martin J., ...
PlasmoDB (http://PlasmoDB.org) is the official database of the Plasmodium falciparum genome sequencing consortium. This resource incorporates finished and draft genome sequence data and...
Thesis (Ph. D.)--Rensselaer Polytechnic Institute, 1986.
Bahl, Amit, Brunk, Brian, Coppel, Ross L., Crabtree, Jonathan, Diskin, Sharon J., Fraunholz, Martin J., ...
PlasmoDB (http://PlasmoDB.org) is the official database of the Plasmodium falciparum genome sequencing consortium. This resource incorporates finished and draft genome sequence data and annotation...
PlasmoDB: the Plasmodium genome resource. A database integrating experimental and computational data
Bahl, Amit, Brunk, Brian, Crabtree, Jonathan, Fraunholz, Martin J., Gajria, Bindu, Grant, Gregory R., ...
PlasmoDB (http://PlasmoDB.org) is the official database of the Plasmodium falciparum genome sequencing consortium. This resource incorporates the recently completed P. falciparum genome sequence and...
ProtRepeatsDB: a database of amino acid repeats in genomes
Kalita, Mridul K, Ramasamy, Gowthaman, Duraisamy, Sekhar, Chauhan, Virander S, Gupta, Dinesh
Bahl, Amit, Brunk, Brian, Coppel, Ross L., Crabtree, Jonathan, Diskin, Sharon J., Fraunholz, Martin J., ...
PlasmoDB (http://PlasmoDB.org) is the official database of the Plasmodium falciparum genome sequencing consortium. This resource incorporates finished and draft genome sequence data and annotation...
PlasmoDB: the Plasmodium genome resource. A database integrating experimental and computational data
Bahl, Amit, Brunk, Brian, Crabtree, Jonathan, Fraunholz, Martin J., Gajria, Bindu, Grant, Gregory R., ...
PlasmoDB (http://PlasmoDB.org) is the official database of the Plasmodium falciparum genome sequencing consortium. This resource incorporates the recently completed P. falciparum genome sequence and...
ProtRepeatsDB: a database of amino acid repeats in genomes
Kalita, Mridul K, Ramasamy, Gowthaman, Duraisamy, Sekhar, Chauhan, Virander S, Gupta, Dinesh
A database for Plasmodium falciparum protein models
Gowthaman, Ramasamy, Sekhar, Duraisamy, Kalita, Mridul Kumar, Gupta, Dinesh
There is an urgent need for developing alternate strategies to combat Malaria caused by Plasmodium falciparum (P. falciparum) because of growing drug resistance and increased incidents of infection...
CyclinPred: A SVM-Based Method for Predicting Cyclin Protein Sequences
Kalita, Mridul K., Nandal, Umesh K., Pattnaik, Ansuman, Sivalingam, Anandhan, Ramasamy, Gowthaman, Kumar, Manish, ...
Functional annotation of protein sequences with low similarity to well characterized protein sequences is a major challenge of computational biology in the post genomic era. The cyclin protein family...
Virtual high throughput screening (vHTS) - A perspective
Subramaniam, Sangeetha, Mehrotra, Monica, Gupta, Dinesh
With the exponential rise in the number of viable novel drug targets, computational methods are being increasingly applied to accelerate the drug discovery process. Virtual High Throughput Screening...