OligoArrayDb: pangenomic oligonucleotide microarray probe sets database (2009)
Rouillard, Jean-Marie, Gulari, Erdogan
OligoArrayDb is a comprehensive database containing pangenomic oligonucleotide microarray probe sets designed for most of the sequenced genomes that are not covered by commercial catalog arrays. The...
Hua, Zhishan, Xia, Yongmei, Srivannavit, Onnop, Rouillard, Jean-Marie, Zhou, Xiaochuan, Gao, Xiaolian, ...
A versatile microreactor platform featuring a novel chemical-resistant microvalve array has been developed using combined silicon/polymer micromachining and a special polymer membrane transfer...
Le Brigand, Kévin, Russell, Roslin, Moreilhon, Chimène, Rouillard, Jean-Marie, Jost, Bernard, Amiot, Franck, ...
Two collections of oligonucleotides have been designed for preparing pangenomic human and mouse microarrays. A total of 148 993 and 121 703 oligonucleotides were designed against human and mouse...
Le Brigand, Kévin, Russell, Roslin, Moreilhon, Chimène, Rouillard, Jean-Marie, Jost, Bernard, Amiot, Franck, ...
Two collections of oligonucleotides have been designed for preparing pangenomic human and mouse microarrays. A total of 148 993 and 121 703 oligonucleotides were designed against human and mouse...
Le Brigand, Kévin, Russell, Roslin, Moreilhon, Chimène, Rouillard, Jean-Marie, Jost, Bernard, Amiot, Franck, ...
Two collections of oligonucleotides have been designed for preparing pangenomic human and mouse microarrays. A total of 148,993 and 121,703 oligonucleotides were designed against human and mouse...
Le Brigand, Kévin, Russell, Roslin, Moreilhon, Chimène, Rouillard, Jean-Marie, Jost, Bernard, Amiot, Franck, ...
Two collections of oligonucleotides have been designed for preparing pangenomic human and mouse microarrays. A total of 148,993 and 121,703 oligonucleotides were designed against human and mouse...
INSTITUTE OF PHYSICS PUBLISHING JOURNAL OF MICROMECHANICS AND MICROENGINEERING (2006)
Zhishan Hua, Yongmei Xia, Onnop Srivannavit, Jean-marie Rouillard, Xiaochuan Zhou, Xiaolian Gao, ...
A versatile microreactor platform featuring a chemical-resistant microvalve array for addressable multiplex syntheses and assays
Le Brigand, Kévin, Russell, Roslin, Moreilhon, Chimène, Rouillard, Jean-Marie, Jost, Bernard, Amiot, Franck, ...
Two collections of oligonucleotides have been designed for preparing pangenomic human and mouse microarrays. A total of 148,993 and 121,703 oligonucleotides were designed against human and mouse...
Wick, Lukas M., Rouillard, Jean Marie, Whittam, Thomas S., Gulari, Erdogan, Tiedje, James M., Hashsham, Syed A.
Nucleic acid hybridization serves as backbone for many high-throughput systems for detection, expression analysis, comparative genomics and re-sequencing. Specificity of hybridization between probes...
Brigand, Kévin Le, Russell, Roslin, Moreilhon, Chimène, Rouillard, Jean-Marie, Jost, Bernard, Amiot, Franck, ...
Two collections of oligonucleotides have been designed for preparing pangenomic human and mouse microarrays. A total of 148 993 and 121 703 oligonucleotides were designed against human and mouse...
High density peptide microarrays. In situ synthesis and applications (2004)
Gao, Xiaolian, Pellois, Jean Philippe, Na, Younghwa, Kim, Younkee, Gulari, Erdogan, Zhou, Xiaochuan
The technologies enabling the creation of large scale, miniaturized peptide or protein microarrays are emerging. The focuses of this review are the synthesis and applications of peptide and...
Gene2Oligo: oligonucleotide design for in vitro gene synthesis (2004)
Jean-marie Rouillard, Woonghee Lee, Gilles Truan, Xiaolian Gao, Xiaochuan Zhou, Erdogan Gulari
There is substantial interest in implementing a bioinformatics tool that allows the design of oligonucleotides to support the development of in vitro gene synthesis. Current protocols to make long...
Gene2Oligo: oligonucleotide design for in vitro gene synthesis (2004)
Rouillard, Jean-Marie, Lee, Woonghee, Truan, Gilles, Gao, Xiaolian, Zhou, Xiaochuan, Gulari, Erdogan
There is substantial interest in implementing a bioinformatics tool that allows the design of oligonucleotides to support the development of in vitro gene synthesis. Current protocols to make long...
Zhou, Xiaochuan, Cai, Shiying, Hong, Ailing, You, Qimin, Yu, Peilin, Sheng, Nijing, ...
Large DNA constructs of arbitrary sequences can currently be assembled with relative ease by joining short synthetic oligodeoxynucleotides (oligonucleotides). The ability to mass produce these...
Jean-marie Rouillard, Michael Zuker, Erdogan Gulari
There is a substantial interest in implementing bioinformatics technologies that allow the design of oligonucleotides to support the development of microarrays made from short synthetic DNA fragments...
Rouillard, Jean-Marie, Zuker, Michael, Gulari, Erdogan
There is a substantial interest in implementing bioinformatics technologies that allow the design of oligonucleotides to support the development of microarrays made from short synthetic DNA fragments...
Individually addressable parallel peptide synthesis on microchips (2002)
Jean Philippe Pellois, Xiaochuan Zhou, Onnop Srivannavit, Tiecheng Zhou, Erdogan Gulari, Xiaolian Gao
Gao, Xiaolian, LeProust, Eric, Zhang, Hua, Srivannavit, Onnop, Gulari, Erdogan, Yu, Peilin, ...
Oligonucleotide microarrays or oDNA chips are effective decoding and analytical tools for genomic sequences and are useful for a broad range of applications. Therefore, it is desirable to have...
Filament-activated chemical vapour deposition of nitride thin films (1996)
Deshpande, Sadanand V., Dupuie, Jeffrey L., Gulari, Erdogan
We have applied the novel method of hot filament-activated chemical vapour deposition (HFCVD) for low-temperature deposition of a variety of nitride thin films. In this paper the results from our...
The reverse micellar system of sodium bis(2-ethylhexyl) phosphate (NaDEHP)/isooctane/brine was used for liquid-liquid extraction of proteins. We investigated the solubilization of cytochrome-c and...
Extraction of aminoglycoside antibiotics with reverse micelles (1996)
The reverse micelle system of sodium di-2-ethylhexyl phosphate was used to extract aminoglycoside antibiotics, neomycin and gentamicin. The aminoglycosides can be efficiently extracted into a reverse...
Formation of polyol–fatty acid esters by lipases in reverse micellar media (1992)
Hayes, Douglas G., Gulari, Erdogan
The synthesis of polyol–fatty acid esters has strong implications in such industries as foods, cosmetics, and polymers. We have investigated these esterification reactions employing the polyols...
Hayes, Douglas G., Gulari, Erdogan
Glycerol-fatty acid esterification has been conducted with lipase from R. delemar in water/AOT/isooctane reverse micellar media, with the major product being 1-monoglyceride, a useful...
Fichthorn, Kristen A., Gulari, Erdogan, Ziff, Robert M.
We have developed a "two-site" lattice gas model which provides a theoretical framework for understanding adsorption equilibrium in systems for which the potential energy surface is inherently...
Fe---P---0 catalysts for methane utilization--catalyst development and identification (1990)
Annapragada, Ananth V., Gulari, Erdogan
Fe---P---0 catalyst formulations show great promise for oxidative coupling of methane. They attain yields of C2 hydrocarbons comparable to the best in the literature at a temperature which is far...
Esterification reactions of lipase in reverse micelles (1990)
Hayes, Douglas G., Gulari, Erdogan
The activities of lipase from Candida cylindracea and Rhizopus delemar have been investigated in water/AOT/iso-octane reverse micellar media through the use of two esterification reactions: fatty...
Matsoukas, Themis, Gulari, Erdogan
A simplified monomer-addition model with a first-order activation step is developed to describe the dynamics of growth of silica particles from alkoxides. In the limit of slow hydrolysis, we obtain...
Self-sustained oscillations in a heterrogeneous catalytic reaction: a monte carlo simulation (1989)
Fichthorn, Kristen A., Gulari, Erdogan, Ziff, Robert M.
We have utilized Monte Carlo methods to study the kinetics of a generic heterogeneous catalytic reaction, A+B-->AB. This reaction includes the elementary steps of adsorption and desorption of...
Matsoukas, Themis, Gulari, Erdogan
The NH3-catalyzed formation of colloidal silica particles from tetra-ethyl-orthosilicate (TEOS) in methanol and ethanol is studied by means of light scattering and Raman spectroscopy. We find that...
Vaporciyan, Garo G., Annapragada, Ananth V., Gulari, Erdogan
Forced reactant cycling of carbon monoxide-nitrogen and oxygen-nitrogen streams over Pt---SnO2 in a differential reactor results in enhancements of the reaction rate of up to 9 times that of the...
CO hydrogenation on Ru/Al2O3: Selectivity under transient conditions (1987)
Transient response and isotopic tracer techniques were used to investigate the surface coverages of the reactants and the selectivity of ruthenium/alumina catalysts in CO hydrogenation. Two forms of...
Dun, Jo-Wei, Gulari, Erdogan, Streusand, Barry
Unsupported and supported decomposition products of 6-heteropolymolybdates were tested as possible Fischer-Tropsch synthesis catalysts. Depending on the heteroatom, the activity changes significantly...
CO oxidation of Pt/Al2O3 and Pd/ Al2O3 transient response and concentration cycling studies (1986)
By combining transient response experiments with forced concentration cycling, we were able to determine the reactive surface intermediates responsible for the large rate enhancements observed during...
Zhou, X., Barshad, Yoav, Gulari, Erdogan
Catalytic oxidation of CO over Pd/Al2O3 was studied with a novel monolithic reactor, with inside the reactor detection of reactants and products. Periodic switching of the feed between CO/N2 and...
Barshad, Yoav, Gulari, Erdogan
In this paper we describe a computer-controlled reactor system capable of imposing any concentration-forcing function on the input. Combination of a monolithic support with a fast-scan Fourier...
Barshad, Yoav, Zhou, Xiaochuan, Gulari, Erdogan
In contrast to the apparent simplicity of the overall reaction, oxidation of CO over Pt/A2O3 is known to present complex behavior. Self-sustained oscillations, hysteresis loops in conversion, and...
A dynamic study of CO oxidation on supported platinum (1985)
Barshad, Yoav, Gulari, Erdogan
Catalytic oxidation of CO on alumina-supported platinum was studied in a tubular isothermal reactor with applied concentration transients. A completely automated reactor system capable of switching...
Dun, Jo-Wei, Gulari, Erdogan, Ng, Ka Yuen Simon
High dispersion and high activity charcoal-supported molybdenum catalysts were prepared using incipient wetness and equilibrium adsorption methods. Activities and selectivities of these catalysts...
Electrolyte-moderated interactions in water/oil microemulsions (1984)
Bedwell, Brian, Gulari, Erdogan
Interactions between the disperse phase droplets of water-in-oil (W/O) microemulsions of Aerosol-OT are profoundly affected by the addition of small amounts of electrolyte. We find that the effect of...
Spectroscopic and scattering investigation of isopoly-molybdate and tungstate solutions (1984)
Ng, Ka Yuen Simon, Gulari, Erdogan
Detailed spectroscopic and scattering investigations of isopoly-molybdate and -tungstate solutions as a function of concentration and pH were made. From scattering results the apparent molecular...
Cheng, Daniel C. H., Gulari, Erdogan
Quasielastic light scattering was used to investigate the size and shape of sodium dodecyl benzene sulfonate (SDBS) micelles in aqueous solutions. Measurements were made as a function of temperature...
Quasi-elastic light-scattering investigation of microemulsions (1980)
Gulari, Erdogan, Bedwell, Brian, Alkhafaji, Salih M.
Quasi-elastic light scattering was used to investigate W/O microemulsions of heptane-AOT-(bis(2-ethylhexyl)sulfosuccinate sodium salt)-water and W/O and O/W microemulsions of hexadecane-SDBS (sodium...
Gao, Xiaolian, LeProust, Eric, Zhang, Hua, Srivannavit, Onnop, Gulari, Erdogan, Yu, Peilin, ...
Oligonucleotide microarrays or oDNA chips are effective decoding and analytical tools for genomic sequences and are useful for a broad range of applications. Therefore, it is desirable to have...
OligoArray 2.0: design of oligonucleotide probes for DNA microarrays using a thermodynamic approach
Rouillard, Jean-Marie, Zuker, Michael, Gulari, Erdogan
There is a substantial interest in implementing bioinformatics technologies that allow the design of oligonucleotides to support the development of microarrays made from short synthetic DNA fragments...
Gene2Oligo: oligonucleotide design for in vitro gene synthesis
Rouillard, Jean-Marie, Lee, Woonghee, Truan, Gilles, Gao, Xiaolian, Zhou, Xiaochuan, Gulari, Erdogan
There is substantial interest in implementing a bioinformatics tool that allows the design of oligonucleotides to support the development of in vitro gene synthesis. Current protocols to make long...
Zhou, Xiaochuan, Cai, Shiying, Hong, Ailing, You, Qimin, Yu, Peilin, Sheng, Nijing, ...
Large DNA constructs of arbitrary sequences can currently be assembled with relative ease by joining short synthetic oligodeoxynucleotides (oligonucleotides). The ability to mass produce these...
Wick, Lukas M., Rouillard, Jean Marie, Whittam, Thomas S., Gulari, Erdogan, Tiedje, James M., Hashsham, Syed A.
Nucleic acid hybridization serves as backbone for many high-throughput systems for detection, expression analysis, comparative genomics and re-sequencing. Specificity of hybridization between probes...
Brigand, Kévin Le, Russell, Roslin, Moreilhon, Chimène, Rouillard, Jean-Marie, Jost, Bernard, Amiot, Franck, ...
Two collections of oligonucleotides have been designed for preparing pangenomic human and mouse microarrays. A total of 148 993 and 121 703 oligonucleotides were designed against human and mouse...
Gao, Xiaolian, LeProust, Eric, Zhang, Hua, Srivannavit, Onnop, Gulari, Erdogan, Yu, Peilin, ...
Oligonucleotide microarrays or oDNA chips are effective decoding and analytical tools for genomic sequences and are useful for a broad range of applications. Therefore, it is desirable to have...
OligoArray 2.0: design of oligonucleotide probes for DNA microarrays using a thermodynamic approach
Rouillard, Jean-Marie, Zuker, Michael, Gulari, Erdogan
There is a substantial interest in implementing bioinformatics technologies that allow the design of oligonucleotides to support the development of microarrays made from short synthetic DNA fragments...
Gene2Oligo: oligonucleotide design for in vitro gene synthesis
Rouillard, Jean-Marie, Lee, Woonghee, Truan, Gilles, Gao, Xiaolian, Zhou, Xiaochuan, Gulari, Erdogan
There is substantial interest in implementing a bioinformatics tool that allows the design of oligonucleotides to support the development of in vitro gene synthesis. Current protocols to make long...
Zhou, Xiaochuan, Cai, Shiying, Hong, Ailing, You, Qimin, Yu, Peilin, Sheng, Nijing, ...
Large DNA constructs of arbitrary sequences can currently be assembled with relative ease by joining short synthetic oligodeoxynucleotides (oligonucleotides). The ability to mass produce these...
Wick, Lukas M., Rouillard, Jean Marie, Whittam, Thomas S., Gulari, Erdogan, Tiedje, James M., Hashsham, Syed A.
Nucleic acid hybridization serves as backbone for many high-throughput systems for detection, expression analysis, comparative genomics and re-sequencing. Specificity of hybridization between probes...
Brigand, Kévin Le, Russell, Roslin, Moreilhon, Chimène, Rouillard, Jean-Marie, Jost, Bernard, Amiot, Franck, ...
Two collections of oligonucleotides have been designed for preparing pangenomic human and mouse microarrays. A total of 148 993 and 121 703 oligonucleotides were designed against human and mouse...
Stedtfeld, Robert D., Wick, Lukas M., Baushke, Samuel W., Tourlousse, Dieter M., Herzog, Amanda B., Xia, Yongmei, ...
Dangling ends and surface-proximal tails of gene targets influence probe-target duplex formation and affect the signal intensity of probes on diagnostic microarrays. This phenomenon was evaluated...
Xia, Yong-Mei, Hua, Zhi-Shan, Srivannavit, Onnop, Ozel, Ayse Bilge, Gulari, Erdogan
Polydimethyl siloxane (PDMS)–glass microchip has a very strong surface effect on polymerase chain reaction (PCR), leading to a very poor PCR yield. In the work reported here, practical dynamic...
Lee, Kangwon, Rouillard, Jean-Marie, Pham, Trinh, Gulari, Erdogan, Kim, Jinsang
No Abstract
Lee, Kangwon, Rouillard, Jean-Marie, Pham, Trinh, Gulari, Erdogan, Kim, Jinsang
No Abstract
Colloids with high-definition surface structures
Chen, Hsien-Yeh, Rouillard, Jean-Marie, Gulari, Erdogan, Lahann, Joerg
Compared with the well equipped arsenal of surface modification methods for flat surfaces, techniques that are applicable to curved, colloidal surfaces are still in their infancy. This technological...
Miller, Sarah M., Tourlousse, Dieter M., Stedtfeld, Robert D., Baushke, Samuel W., Herzog, Amanda B., Wick, Lukas M., ...
Pathogen detection tools with high reliability are needed for various applications, including food and water safety and clinical diagnostics. In this study, we designed and validated an in...
Stedtfeld, Robert D., Baushke, Samuel W., Tourlousse, Dieter M., Miller, Sarah M., Stedtfeld, Tiffany M., Gulari, Erdogan, ...
Development of quantitative PCR (QPCR) assays typically requires extensive screening within and across a given species to ensure specific detection and lucid identification among various pathogenic...
OligoArrayDb: pangenomic oligonucleotide microarray probe sets database
Rouillard, Jean-Marie, Gulari, Erdogan
OligoArrayDb is a comprehensive database containing pangenomic oligonucleotide microarray probe sets designed for most of the sequenced genomes that are not covered by commercial catalog arrays. The...