Structural and functional-annotation of an equine whole genome oligoarray (2009)
Bright, Lauren A, Burgess, Shane C, Chowdhary, Bhanu, Swiderski, Cyprianna E, McCarthy, Fiona M
Abstract Background The horse genome is sequenced, allowing equine researchers to use high-throughput functional genomics platforms such as microarrays; next-generation sequencing for gene expression...
Facilitating functional annotation of chicken microarray data (2009)
Buza, Teresia J, Kumar, Ranjit, Gresham, Cathy R, Burgess, Shane C, McCarthy, Fiona M
Abstract Background Modeling results from chicken microarray studies is challenging for researchers due to little functional annotation associated with these arrays. The Affymetrix GenChip chicken...
The chicken gene nomenclature committee report (2009)
Burt, David W, Carrë, Wilfrid, Fell, Mark, Law, Andy S, Antin, Parker B, Maglott, Donna R, ...
Abstract Comparative genomics is an essential component of the post-genomic era. The chicken genome is the first avian genome to be sequenced and it will serve as a model for other avian species....
Introduction to the Proceedings of the Avian Genomics and Gene Ontology Annotation Workshop (2009)
Bridges, Susan M, Burgess, Shane C, McCarthy, Fiona M
Abstract The Avian Genomics Conference and Gene Ontology Annotation Workshop brought together researchers and students from around the world to present their latest research addressing the delivery...
ArrayIDer: automated structural re-annotation pipeline for DNA microarrays (2009)
Van Den Berg, Bart HJ, Konieczka, Jay H, McCarthy, Fiona M, Burgess, Shane C
Abstract Background Systems biology modeling from microarray data requires the most contemporary structural and functional array annotation. However, microarray annotations, especially for...
Evelyn Camon, Emily Dimmer, Daniel Barrell, Nicola Mulder, Rolf Apweiler, Fiona M. Mccarthy, ...
electronic and manual annotations to the UniProt Knowledgebase using the standardized vocabulary of the Gene Ontology (GO). As a supplementary archive of GO annotation, GOA promotes a high level of...
Bmc Bioinformatics, William S S, Susan M Bridges, Fiona M Mccarthy, Bindu N, Shane C Burgess, ...
Proceedings Prediction of peptides observable by mass spectrometry applied at the experimental set level
Gene Ontology annotation quality analysis in model eukaryotes (2008)
Buza, Teresia J., McCarthy, Fiona M., Wang, Nan, Bridges, Susan M., Burgess, Shane C.
Functional analysis using the Gene Ontology (GO) is crucial for array analysis, but it is often difficult for researchers to assess the amount and quality of GO annotations associated with different...
Buza, Teresia J, McCarthy, Fiona M, Burgess, Shane C
Abstract Background The chicken genome was sequenced because of its phylogenetic position as a non-mammalian vertebrate, its use as a biomedical model especially to study embryology and development,...
Prediction of peptides observable by mass spectrometry applied at the experimental set level (2007)
Sanders, William S, Bridges, Susan M, McCarthy, Fiona M, Nanduri, Bindu, Burgess, Shane C
Abstract Background When proteins are subjected to proteolytic digestion and analyzed by mass spectrometry using a method such as 2D LC MS/MS, only a portion of the proteotypic peptides associated...
AgBase: a unified resource for functional analysis in agriculture (2007)
McCarthy, Fiona M., Bridges, Susan M., Wang, Nan, Magee, G. Bryce, Williams, W. Paul, Luthe, Dawn S., ...
Analysis of functional genomics (transcriptomics and proteomics) datasets is hindered in agricultural species because agricultural genome sequences have relatively poor structural and functional...
AgBase: a functional genomics resource for agriculture (2006)
McCarthy, Fiona M, Wang, Nan, Magee, G Bryce, Nanduri, Bindu, Lawrence, Mark L, Camon, Evelyn B, ...
Abstract Background Many agricultural species and their pathogens have sequenced genomes and more are in progress. Agricultural species provide food, fiber, xenotransplant tissues, biopharmaceuticals...
BMC Genomics BioMed Central Database AgBase: a functional genomics resource for agriculture (2006)
Fiona M Mccarthy, Nan Wang, G Bryce Magee, Bindu N, Mark L Lawrence, Evelyn B Camon, ...
© 2006 McCarthy et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License
Mahony, Timothy J., McCarthy, Fiona M., Gravel, Jennifer L., West, Lani, Young, Peter L.
The complete genome of bovine herpesvirus 1 (BoHV-1) strain V155 has been cloned as a bacterial artificial chromosome (BAC). Following electroporation into Escherichia coli strain DH10B, the BoHV-1...
AgBase: a functional genomics resource for agriculture
McCarthy, Fiona M, Wang, Nan, Magee, G Bryce, Nanduri, Bindu, Lawrence, Mark L, Camon, Evelyn B, ...
Mahony, Timothy J., McCarthy, Fiona M., Gravel, Jennifer L., West, Lani, Young, Peter L.
The complete genome of bovine herpesvirus 1 (BoHV-1) strain V155 has been cloned as a bacterial artificial chromosome (BAC). Following electroporation into Escherichia coli strain DH10B, the BoHV-1...
AgBase: a functional genomics resource for agriculture
McCarthy, Fiona M, Wang, Nan, Magee, G Bryce, Nanduri, Bindu, Lawrence, Mark L, Camon, Evelyn B, ...
AgBase: a unified resource for functional analysis in agriculture
McCarthy, Fiona M., Bridges, Susan M., Wang, Nan, Magee, G. Bryce, Williams, W. Paul, Luthe, Dawn S., ...
Analysis of functional genomics (transcriptomics and proteomics) datasets is hindered in agricultural species because agricultural genome sequences have relatively poor structural and functional...
Prediction of peptides observable by mass spectrometry applied at the experimental set level
Sanders, William S, Bridges, Susan M, McCarthy, Fiona M, Nanduri, Bindu, Burgess, Shane C
Gene Ontology annotation quality analysis in model eukaryotes
Buza, Teresia J., McCarthy, Fiona M., Wang, Nan, Bridges, Susan M., Burgess, Shane C.
Functional analysis using the Gene Ontology (GO) is crucial for array analysis, but it is often difficult for researchers to assess the amount and quality of GO annotations associated with different...