flowClust: a Bioconductor package for automated gating of flow cytometry data (2009)
Lo, Kenneth, Hahne, Florian, Brinkman, Ryan R, Gottardo, Raphael
Abstract Background As a high-throughput technology that offers rapid quantification of multidimensional characteristics for millions of cells, flow cytometry (FCM) is widely used in health research,...
flowCore: a Bioconductor package for high throughput flow cytometry (2009)
Hahne, Florian, LeMeur, Nolwenn, Brinkman, Ryan R, Ellis, Byron, Haaland, Perry, Sarkar, Deepayan, ...
Abstract Background Recent advances in automation technologies have enabled the use of flow cytometry for high throughput screening, generating large complex data sets often in clinical trials or...
Analysis of High-Throughput Flow Cytometry Data Using plateCore (2009)
Errol Strain, Florian Hahne, Ryan R. Brinkman, Perry Haaland
Flow cytometry (FCM) software packages from R/Bioconductor, such as flowCore and flowViz, serve as an open platform for development of new analysis tools and methods. We created plateCore, a new...
Analysis of High-Throughput Flow Cytometry Data Using plateCore (2009)
Errol Strain, Florian Hahne, Ryan R. Brinkman, Perry Haaland
Flow cytometry (FCM) software packages from R/Bioconductor, such as flowCore and flowViz, serve as an open platform for development of new analysis tools and methods. We created plateCore, a new...
Extending pathways based on gene lists using InterPro domain signatures (2008)
Hahne, Florian, Mehrle, Alexander, Arlt, Dorit, Poustka, Annemarie, Wiemann, Stefan, Beissbarth, Tim
Abstract Background High-throughput technologies like functional screens and gene expression analysis produce extended lists of candidate genes. Gene-Set Enrichment Analysis is a commonly used and...
Hahne, Florian, Arlt, Dorit, Sauermann, Mamatha, Majety, Meher, Poustka, Annemarie, Wiemann, Stefan, ...
Abstract Highthroughput cell-based assays with flow cytometric readout provide a powerful technique for identifying components of biologic pathways and their interactors. Interpretation of these...
Visualizing Genomic Data (2006)
Gentleman, Robert, Hahne, Florian, Huber, Wolfgang
The advent of experimental techniques capable of probing biomolecules and cells at high levels of resolution has led to a rapid change in the methods used for the analysis of experimental molecular...
Visualizing Genomic Data (2006)
Gentleman, Robert, Hahne, Florian, Huber, Wolfgang
The advent of experimental techniques capable of probing biomolecules and cells at high levels of resolution has led to a rapid change in the methods used for the analysis of experimental molecular...
Visualizing Genomic Data (2006)
Gentleman, Robert, Hahne, Florian, Huber, Wolfgang
The advent of experimental techniques capable of probing biomolecules and cells at high levels of resolution has led to a rapid change in the methods used for the analysis of experimental molecular...
Visualizing Genomic Data (2006)
Gentleman, Robert, Hahne, Florian, Huber, Wolfgang
The advent of experimental techniques capable of probing biomolecules and cells at high levels of resolution has led to a rapid change in the methods used for the analysis of experimental molecular...
The LIFEdb database in 2006 (2006)
Er Mehrle, Heiko Rosenfelder, Coral Del Val, Dorit Arlt, Florian Hahne, Stephanie Bechtel, ...
LIFEdb
The LIFEdb database in 2006 (2006)
Mehrle, Alexander, Rosenfelder, Heiko, Schupp, Ingo, Del Val, Coral, Arlt, Dorit, Hahne, Florian, ...
LIFEdb (http://www.LIFEdb.de) integrates data from large-scale functional genomics assays and manual cDNA annotation with bioinformatics gene expression and protein analysis. New features of LIFEdb...
Mehrle, Alexander, Rosenfelder, Heiko, Schupp, Ingo, Del Val, Coral, Arlt, Dorit, Hahne, Florian, ...
LIFEdb () integrates data from large-scale functional genomics assays and manual cDNA annotation with bioinformatics gene expression and protein analysis. New features of LIFEdb include (i) an...
Mehrle, Alexander, Rosenfelder, Heiko, Schupp, Ingo, Del Val, Coral, Arlt, Dorit, Hahne, Florian, ...
LIFEdb () integrates data from large-scale functional genomics assays and manual cDNA annotation with bioinformatics gene expression and protein analysis. New features of LIFEdb include (i) an...
Hahne, Florian, Arlt, Dorit, Sauermann, Mamatha, Majety, Meher, Poustka, Annemarie, Wiemann, Stefan, ...
A software tool for the analysis of high-throughput cell-based assays is presented.
Extending pathways based on gene lists using InterPro domain signatures
Hahne, Florian, Mehrle, Alexander, Arlt, Dorit, Poustka, Annemarie, Wiemann, Stefan, Beissbarth, Tim