NotI passporting to identify species composition of complex microbial systems (2003)
Zabarovska, Veronika, Kutsenko, Alexey S., Petrenko, Lev, Kilosanidze, Gelena, Ljungqvist, Olle, Norin, Elisabeth, ...
We describe here a new method for large‐scale scanning of microbial genomes on a quantitative and qualitative basis. To achieve this aim we propose to create NotI passports: databases containing...
Zabarovsky, Eugene R., Petrenko, Lev, Protopopov, Alexei, Vorontsova, Olga, Kutsenko, Alexey S., Zhao, Yanyan, ...
We have developed a new type of microarray, restriction site tagged (RST), for example NotI, microarrays. In this approach only sequences surrounding specific restriction sites (i.e. NotI linking...
A new approach to genome mapping and sequencing: slalom libraries (2002)
Zabarovska, Veronika I., Gizatullin, Rinat Z., Al-Amin, Ali N., Podowski, Raf, Protopopov, Alexei I., Löfdahl, Sven, ...
We describe here an efficient strategy for simultaneous genome mapping and sequencing. The approach is based on physically oriented, overlapping restriction fragment libraries called slalom...
Sequences Using a Naïve Bayesian Classifier (2001)
Rickard S, Gösta Winberg, Carl-ivar Bränden, Er Kaske, Ingemar Ernberg, Joakim Cöster, ...
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Capturing Whole-Genome Characteristics in Short Sequences Using a Naive Bayesian Classifier (2001)
Sandberg, Rickard, Winberg, Gösta, Bränden, Carl-Ivar, Kaske, Alexander, Ernberg, Ingemar, Cöster, Joakim
NotI clones in the analysis of the human genome (2000)
Zabarovsky, Eugene R., Gizatullin, Rinat, Podowski, Raf M., Zabarovska, Veronika V., Xie, Li, Muravenko, Olga V., ...
NotI linking clones contain sequences flanking NotI recognition sites and were previously shown to be tightly associated with CpG islands and genes. To directly assess the value of NotI clones in...
Zabarovsky, Eugene R., Boldog, Ferenc, Thompson, Teryl, Scanlon, David, Winberg, Gösta, Marcsek, Zoltán, ...
Two new diphasmid vectors (lambda SK17 and SK22) and a novel procedure to construct linking libraries are described. A partial filling-in reaction provides counter-selection against false linking...
Winberg, Gösta, Hammarskjöld, Marie-Louise
A new method for isolating DNA from agarose gels is described. The method involves the simultaneous transfer of all DNA-fragments from an agarose slab gel onto DEAE-cellulose paper and the elution of...
A new approach to genome mapping and sequencing: slalom libraries
Zabarovska, Veronika I., Gizatullin, Rinat Z., Al-Amin, Ali N., Podowski, Raf, Protopopov, Alexei I., Löfdahl, Sven, ...
We describe here an efficient strategy for simultaneous genome mapping and sequencing. The approach is based on physically oriented, overlapping restriction fragment libraries called slalom...
Winberg, Gösta, Matskova, Liudmila, Chen, Fu, Plant, Pamela, Rotin, Daniela, Gish, Gerald, ...
The latent membrane protein (LMP) 2A of Epstein-Barr virus (EBV) is implicated in the maintenance of viral latency and appears to function in part by inhibiting B-cell receptor (BCR) signaling. The...
NotI clones in the analysis of the human genome
Zabarovsky, Eugene R., Gizatullin, Rinat, Podowski, Raf M., Zabarovska, Veronika V., Xie, Li, Muravenko, Olga V., ...
NotI linking clones contain sequences flanking NotI recognition sites and were previously shown to be tightly associated with CpG islands and genes. To directly assess the value of NotI clones in...
C-Terminal Domain of the Epstein-Barr Virus LMP2A Membrane Protein Contains a Clustering Signal
Matskova, Liudmila, Ernberg, Ingemar, Pawson, Tony, Winberg, Gösta
The latency-regulated transmembrane protein LMP2A interferes with signaling from the B-cell antigen receptor by recruiting the tyrosine kinases Lyn and Syk and by targeting them for degradation by...
NotI passporting to identify species composition of complex microbial systems
Zabarovska, Veronika, Kutsenko, Alexey S., Petrenko, Lev, Kilosanidze, Gelena, Ljungqvist, Olle, Norin, Elisabeth, ...
We describe here a new method for large-scale scanning of microbial genomes on a quantitative and qualitative basis. To achieve this aim we propose to create NotI passports: databases containing NotI...
Zabarovsky, Eugene R., Petrenko, Lev, Protopopov, Alexei, Vorontsova, Olga, Kutsenko, Alexey S., Zhao, Yanyan, ...
We have developed a new type of microarray, restriction site tagged (RST), for example NotI, microarrays. In this approach only sequences surrounding specific restriction sites (i.e. NotI linking...
Capturing Whole-Genome Characteristics in Short Sequences Using a Naïve Bayesian Classifier
Sandberg, Rickard, Winberg, Gösta, Bränden, Carl-Ivar, Kaske, Alexander, Ernberg, Ingemar, Cöster, Joakim
Bacterial genomes have diverged during evolution, resulting in clearcut differences in their nucleotide composition, such as their GC content. The analysis of complete sequences of bacterial genomes...
RBSP3 (HYA22) is a tumor suppressor gene implicated in major epithelial malignancies
Kashuba, Vladimir I., Li, Jingfeng, Wang, Fuli, Senchenko, Vera N., Protopopov, Alexey, Malyukova, Alena, ...
Chromosome 3p21.3 region is frequently (>90%) deleted in lung and other major human carcinomas. We subdivided 3p21.3 into LUCA and AP20 subregions and discovered frequent homozygous deletions...
WW Domains Provide a Platform for the Assembly of Multiprotein Networks†
Ingham, Robert J., Colwill, Karen, Howard, Caley, Dettwiler, Sabine, Lim, Caesar S. H., Yu, Joanna, ...
WW domains are protein modules that mediate protein-protein interactions through recognition of proline-rich peptide motifs and phosphorylated serine/threonine-proline sites. To pursue the functional...
A new approach to genome mapping and sequencing: slalom libraries
Zabarovska, Veronika I., Gizatullin, Rinat Z., Al-Amin, Ali N., Podowski, Raf, Protopopov, Alexei I., Löfdahl, Sven, ...
We describe here an efficient strategy for simultaneous genome mapping and sequencing. The approach is based on physically oriented, overlapping restriction fragment libraries called slalom...
Winberg, Gösta, Matskova, Liudmila, Chen, Fu, Plant, Pamela, Rotin, Daniela, Gish, Gerald, ...
The latent membrane protein (LMP) 2A of Epstein-Barr virus (EBV) is implicated in the maintenance of viral latency and appears to function in part by inhibiting B-cell receptor (BCR) signaling. The...
NotI clones in the analysis of the human genome
Zabarovsky, Eugene R., Gizatullin, Rinat, Podowski, Raf M., Zabarovska, Veronika V., Xie, Li, Muravenko, Olga V., ...
NotI linking clones contain sequences flanking NotI recognition sites and were previously shown to be tightly associated with CpG islands and genes. To directly assess the value of NotI clones in...
C-Terminal Domain of the Epstein-Barr Virus LMP2A Membrane Protein Contains a Clustering Signal
Matskova, Liudmila, Ernberg, Ingemar, Pawson, Tony, Winberg, Gösta
The latency-regulated transmembrane protein LMP2A interferes with signaling from the B-cell antigen receptor by recruiting the tyrosine kinases Lyn and Syk and by targeting them for degradation by...
NotI passporting to identify species composition of complex microbial systems
Zabarovska, Veronika, Kutsenko, Alexey S., Petrenko, Lev, Kilosanidze, Gelena, Ljungqvist, Olle, Norin, Elisabeth, ...
We describe here a new method for large-scale scanning of microbial genomes on a quantitative and qualitative basis. To achieve this aim we propose to create NotI passports: databases containing NotI...
Zabarovsky, Eugene R., Petrenko, Lev, Protopopov, Alexei, Vorontsova, Olga, Kutsenko, Alexey S., Zhao, Yanyan, ...
We have developed a new type of microarray, restriction site tagged (RST), for example NotI, microarrays. In this approach only sequences surrounding specific restriction sites (i.e. NotI linking...
Capturing Whole-Genome Characteristics in Short Sequences Using a Naïve Bayesian Classifier
Sandberg, Rickard, Winberg, Gösta, Bränden, Carl-Ivar, Kaske, Alexander, Ernberg, Ingemar, Cöster, Joakim
Bacterial genomes have diverged during evolution, resulting in clearcut differences in their nucleotide composition, such as their GC content. The analysis of complete sequences of bacterial genomes...
RBSP3 (HYA22) is a tumor suppressor gene implicated in major epithelial malignancies
Kashuba, Vladimir I., Li, Jingfeng, Wang, Fuli, Senchenko, Vera N., Protopopov, Alexey, Malyukova, Alena, ...
Chromosome 3p21.3 region is frequently (>90%) deleted in lung and other major human carcinomas. We subdivided 3p21.3 into LUCA and AP20 subregions and discovered frequent homozygous deletions...
WW Domains Provide a Platform for the Assembly of Multiprotein Networks†
Ingham, Robert J., Colwill, Karen, Howard, Caley, Dettwiler, Sabine, Lim, Caesar S. H., Yu, Joanna, ...
WW domains are protein modules that mediate protein-protein interactions through recognition of proline-rich peptide motifs and phosphorylated serine/threonine-proline sites. To pursue the functional...