Protein Similarity Search with Subset Seeds on a Dedicated Reconfigurable Hardware (2009)
Pierre Peterlongo, Dominique Lavenier, Gilles Georges, Julien Jacques, Gregory Kucherov, Mathieu Giraud
Abstract. With a sharp increase of available DNA and protein sequence data, new precise and fast similarity search methods are needed for largescale genome and proteome comparisons. Modern seed-based...
Pierre Peterlongo, Laurent Noé, Dominique Lavenier, Gilles Georges, Julien Jacques, Gregory Kucherov, ...
similarity search with subset seeds
Protein similarity search with subset seeds on a dedicated reconfigurable hardware (2008)
Pierre Peterlongo, Laurent Noé, Dominique Lavenier, Gilles Georges, Julien Jacques, Gregory Kucherov, ...
Genome sequencing of numerous species raises the need of complete genome comparison with precise and fast similarity searches. Today, advanced seed-based techniques (spaced seeds, multiple seeds,...
Protein similarity search with subset seeds on a dedicated reconfigurable hardware (2007)
Peterlongo, Pierre, Noé, Laurent, Lavenier, Dominique, Georges, Gilles, Jacques, Julien, Kucherov, Gregory, ...
Genome sequencing of numerous species raises the need of complete genome comparison with precise and fast similarity searches. Today, advanced seed-based techniques (spaced seeds, multiple seeds,...
Protein similarity search with subset seeds on a dedicated reconfigurable hardware (2007)
Peterlongo, Pierre, Noé, Laurent, Lavenier, Dominique, Georges, Gilles, Jacques, Julien, Kucherov, Gregory, ...
Genome sequencing of numerous species raises the need of complete genome comparison with precise and fast similarity searches. Today, advanced seed-based techniques (spaced seeds, multiple seeds,...
Seed-based Genomic Sequence Comparison using a FPGA/FLASH Accelerator (2006)
Lavenier, Dominique, Xinchun, Liu, Georges, Gilles
This paper presents a parallel architecture for computing genomic sequence alignments using seed-based algorithms. Originality comes from the simultaneous use of FPGA components and FLASH memories....
Seed-based Genomic Sequence Comparison using a FPGA/FLASH Accelerator (2006)
Lavenier, Dominique, Xinchun, Liu, Georges, Gilles
This paper presents a parallel architecture for computing genomic sequence alignments using seed-based algorithms. Originality comes from the simultaneous use of FPGA components and FLASH memories....