Summary: Phylogenetic Web Profiler (PWP) is a webbased (2008)
Philip Wong, Grigory Kolesov, Dmitrij Frishman, Walid A. Houry
Protein knot server: detection of knots in protein structures (2007)
Kolesov, Grigory, Virnau, Peter, Kardar, Mehran, Mirny, Leonid A.
KNOTS (http://knots.mit.edu) is a web server that detects knots in protein structures. Several protein structures have been reported to contain intricate knots. The physiological role of knots and...
New Approaches in Context-based Protein Function Prediction (2006)
In this work we analyze genomic neighborhood of a gene as a source of functional information. Using concept of Similarity-Neighborhood graph we show presence of non-trivial relations between genomic...
New approaches in context-based gene function prediction / (2005)
München, Techn. Univ., Diss., 2005 (Nicht für den Austausch).
New approaches in context-based gene function prediction [Elektronische Ressource] / (2005)
München, Techn. Univ., Diss., 2005.
Kolker, Eugene, Makarova, Kira S., Shabalina, Svetlana, Picone, Alex F., Purvine, Samuel, Holzman, Ted, ...
The progress in genome sequencing has led to a rapid accumulation in GenBank submissions of uncharacterized ‘hypothetical’ genes. These genes, which have not been experimentally characterized and...
The PEDANT genome database (2003)
Frishman, Dmitrij, Mokrejs, Martin, Kosykh, Denis, Kastenmüller, Gabi, Kolesov, Grigory, Zubrzycki, Igor, ...
The PEDANT genome database (http://pedant.gsf.de) provides exhaustive automatic analysis of genomic sequences by a large variety of established bioinformatics tools through a comprehensive Web-based...
DOI: 10.1093/nar/gkg005 The PEDANT genome database (2002)
Dmitrij Frishman, Martin Mokrejs, Denis Kosykh, Gabi Kastenmüller, Grigory Kolesov, Igor Zubrzycki, ...
The PEDANT genome database
Schoof, Heiko, Zaccaria, Paolo, Gundlach, Heidrun, Lemcke, Kai, Rudd, Stephen, Kolesov, Grigory, ...
Arabidopsis thaliana is the first plant for which the complete genome has been sequenced and published. Annotation of complex eukaryotic genomes requires more than the assignment of genetic elements...
SNAPper: gene order predicts gene function (2002)
Kolesov, Grigory, Mewes, Hans-Werner, Frishman, Dmitrij
Summary: SNAPper is a network service for predicting gene function based on the conservation of gene order. Availability: The SNAPper server is available at http://pedant.gsf.de/snapper....
Schoof, Heiko, Zaccaria, Paolo, Gundlach, Heidrun, Lemcke, Kai, Rudd, Stephen, Kolesov, Grigory, ...
Arabidopsis thaliana is the first plant for which the complete genome has been sequenced and published. Annotation of complex eukaryotic genomes requires more than the assignment of genetic elements...
Frishman, Dmitrij, Mokrejs, Martin, Kosykh, Denis, Kastenmüller, Gabi, Kolesov, Grigory, Zubrzycki, Igor, ...
The PEDANT genome database (http://pedant.gsf.de) provides exhaustive automatic analysis of genomic sequences by a large variety of established bioinformatics tools through a comprehensive Web-based...
Identification and functional analysis of ‘hypothetical’ genes expressed in Haemophilus influenzae
Kolker, Eugene, Makarova, Kira S., Shabalina, Svetlana, Picone, Alex F., Purvine, Samuel, Holzman, Ted, ...
The progress in genome sequencing has led to a rapid accumulation in GenBank submissions of uncharacterized ‘hypothetical’ genes. These genes, which have not been experimentally characterized and...
Schoof, Heiko, Zaccaria, Paolo, Gundlach, Heidrun, Lemcke, Kai, Rudd, Stephen, Kolesov, Grigory, ...
Arabidopsis thaliana is the first plant for which the complete genome has been sequenced and published. Annotation of complex eukaryotic genomes requires more than the assignment of genetic elements...
Frishman, Dmitrij, Mokrejs, Martin, Kosykh, Denis, Kastenmüller, Gabi, Kolesov, Grigory, Zubrzycki, Igor, ...
The PEDANT genome database (http://pedant.gsf.de) provides exhaustive automatic analysis of genomic sequences by a large variety of established bioinformatics tools through a comprehensive Web-based...
Identification and functional analysis of ‘hypothetical’ genes expressed in Haemophilus influenzae
Kolker, Eugene, Makarova, Kira S., Shabalina, Svetlana, Picone, Alex F., Purvine, Samuel, Holzman, Ted, ...
The progress in genome sequencing has led to a rapid accumulation in GenBank submissions of uncharacterized ‘hypothetical’ genes. These genes, which have not been experimentally characterized and...
Protein knot server: detection of knots in protein structures
Kolesov, Grigory, Virnau, Peter, Kardar, Mehran, Mirny, Leonid A.
KNOTS (http://knots.mit.edu) is a web server that detects knots in protein structures. Several protein structures have been reported to contain intricate knots. The physiological role of knots and...
How gene order is influenced by the biophysics of transcription regulation
Kolesov, Grigory, Wunderlich, Zeba, Laikova, Olga N., Gelfand, Mikhail S., Mirny, Leonid A.
What are the forces that shape the structure of prokaryotic genomes: the order of genes, their proximity, and their orientation? Coregulation and coordinated horizontal gene transfer are believed to...