Sequence-based prediction of protein-protein interactions by means of codon usage (2008)
Najafabadi, Hamed, Salavati, Reza
Abstract We introduce a novel approach to predict interaction of two proteins solely by analyzing their coding sequences. We found that similarity in codon usage is a strong predictor of...
Designing multiple degenerate primers via consecutive pairwise alignments (2008)
Najafabadi, Hamed, Torabi, Noorossadat, Chamankhah, Mahmood
Abstract Background Different algorithms have been proposed to solve various versions of degenerate primer design problem. For one of the most general cases, multiple degenerate primer design...