Grammar-based distance in progressive multiple sequence alignment (2008)
Russell, David J, Otu, Hasan H, Sayood, Khalid
Abstract Background We propose a multiple sequence alignment (MSA) algorithm and compare the alignment-quality and execution-time of the proposed algorithm with that of existing algorithms. The...
Nikolova-Krstevski, Vesna, Bhasin, Manoj, Otu, Hasan H, Libermann, Towia, Oettgen, Peter
Abstract Background Endothelial differentiation occurs during normal vascular development in the developing embryo. This process is recapitulated in the adult when endothelial progenitor cells are...
Grammar-Based Distance in Progressive Multiple Sequence Alignment (2008)
Russell, David, Otu, Hasan H, Sayood, Khalid
Background: We propose a multiple sequence alignment (MSA) algorithm and compare the alignment-quality and execution-time of the proposed algorithm with that of existing algorithms. The proposed...
A new sequence distance measure for phylogenetic tree construction (2003)
Motivation: Most existing approaches for phylogenetic inference use multiple alignment of sequences and assume some sort of an evolutionary model. The multiple alignment strategy does not work for...
A divide-and-conquer approach to fragment assembly (2003)
Motivation: One of the major problems in DNA sequencing is assembling the fragments obtained by shotgun sequencing. Most existing fragment assembly techniques follow the overlap—layout—consensus...
Characterization and use of structure and complexity of DNA sequences / (2002)
Thesis (Ph. D.)--University of Nebraska--Lincoln, 2002.
The transcriptome of human oocytes
Kocabas, Arif Murat, Crosby, Javier, Ross, Pablo J., Otu, Hasan H., Beyhan, Zeki, Can, Handan, ...
The identification of genes and deduced pathways from the mature human oocyte can help us better understand oogenesis, folliculogenesis, fertilization, and embryonic development. Human metaphase II...
Aivado, Manuel, Spentzos, Dimitrios, Germing, Ulrich, Alterovitz, Gil, Meng, Xiao-Ying, Grall, Franck, ...
Myelodysplastic syndromes (MDS) are among the most frequent hematologic malignancies. Patients have a short survival and often progress to acute myeloid leukemia. The diagnosis of MDS can be...
Genomic Counter-Stress Changes Induced by the Relaxation Response
Dusek, Jeffery A., Otu, Hasan H., Wohlhueter, Ann L., Bhasin, Manoj, Zerbini, Luiz F., Joseph, Marie G., ...
Marselli, Lorella, Thorne, Jeffrey, Ahn, Yu-Bae, Omer, Abdulkadir, Sgroi, Dennis C., Libermann, Towia, ...
Context: Human β-cell gene profiling is a powerful tool for understanding β-cell biology in normal and pathological conditions. Assessment is complicated when isolated islets are studied because of...