PEP1 regulates perennial flowering in Arabis alpina (2009)
Wang, Renhou, Farrona, Sara, Vincent, Coral, Joecker, Anika, Schoof, Heiko, Turck, Franziska, ...
6 pages, 4 figures.-- Supporting information (Suppl. figures S1-S8, tables S1-S2) available at: http://www.nature.com/nature/journal/vaop/ncurrent/suppinfo/nature07988.html
A snapshot of the emerging tomato genome sequence (2009)
Mueller, Lukas, Klein Lankhorst, René, Tanksley, Steven D., Giovannoni, James J., White, Ruth, Vrebalov, Julia, ...
The genome of tomato (Solanum lycopersicum L.) is being sequenced by an international consortium of 10 countries (Korea, China, the United Kingdom, India, the Netherlands, France, Japan, Spain,...
K: PlantMarkers--a database of predicted molecular markers from plants (2008)
Stephen Rudd, Heiko Schoof, Klaus Mayer
from plants
Kolmos, Elsebeth, Schoof, Heiko, Plümer, Michael, Davis, Seth J
Abstract Background The plant circadian clock has at its core a feedback loop that includes TIMING OF CAB2 EXPRESSION 1 (TOC1). This protein has an as of yet unknown biochemical activity. It has been...
Jöcker, Anika, Hoffmann, Fabian, Groscurth, Andreas, Schoof, Heiko
Summary: Many sequenced genes are mainly annotated through automatic transfer of annotation from similar sequences. Manual comparison of results or intermediate results from different tools can help...
Ballvora, Agim, Jöcker, Anika, Viehöver, Prisca, Ishihara, Hirofumi, Paal, Jürgen, Meksem, Khalid, ...
Abstract Background Quantitative phenotypic variation of agronomic characters in crop plants is controlled by environmental and genetic factors (quantitative trait loci = QTL). To understand the...
Itoh, Takeshi, Tanaka, Tsuyoshi, Barrero, Roberto A., Yamasaki, Chisato, Fujii, Yasuyuki, Hilton, Phillip B., ...
We present here the annotation of the complete genome of rice Oryza sativa L. ssp. japonica cultivar Nipponbare. All functional annotations for proteins and non-protein-coding RNA (npRNA) candidates...
MIPSPlantsDB--plant database resource for integrative and comparative plant genome research (2007)
Spannagl, Manuel, Noubibou, Octave, Haase, Dirk, Yang, Li, Gundlach, Heidrun, Hindemitt, Tobias, ...
Genome-oriented plant research delivers rapidly increasing amount of plant genome data. Comprehensive and structured information resources are required to structure and communicate genome and...
Itoh, Takeshi, Tanaka, Tsuyoshi, Barrero, Roberto A., Yamasaki, Chisato, Fujii, Yasuyuki, Hilton, Phillip B., ...
We present here the annotation of the complete genome of rice Oryza sativa L. ssp. japonica cultivar Nipponbare. All functional annotations for proteins and non-protein-coding RNA (npRNA) candidates...
Increasing numbers of whole-genome sequences are available, but to interpret them fully requires more than listing all genes. Genome databases are faced with the challenges of integrating...
MIPSPlantsDB—plant database resource for (2006)
Tobias Hindemitt, Kathrin Klee, Georg Haberer, Heiko Schoof
integrative and comparative plant genome research
comparative legume information resource (2006)
Manuel Spannagl, Heiko Schoof, Jérôme Gouzy, Medicagoo Searching Medicago, Thomas Faraut, Thomas Schiex, ...
Table of contents:
PlantMarkers--a database of predicted molecular markers from plants (2005)
Rudd, Stephen, Schoof, Heiko, Mayer, Klaus
Molecular markers are required in a broad spectrum of gene screening approaches, ranging from gene-mapping within traditional ‘forward’-genetics approaches through QTL identification studies to...
Englbrecht, Claudia C, Schoof, Heiko, Böhm, Siegfried
Background The classical C2H2 zinc finger domain is involved in a wide range of functions and can bind to DNA, RNA and proteins. The comparison of zinc finger proteins in several eukaryotes has shown...
Schoof, Heiko, Ernst, Rebecca, Nazarov, Vladimir, Pfeifer, Lukas, Mewes, Hans-Werner, Mayer, Klaus F. X.
Arabidopsis thaliana is the most widely studied model plant. Functional genomics is intensively underway in many laboratories worldwide. Beyond the basic annotation of the primary sequence data, the...
MOsDB: an integrated information resource for rice genomics (2003)
Wojciech M. Karlowski, Heiko Schoof, Vijayalakshmi Janakiraman, Volker Stuempflen
The MIPS Rice (Oryza sativa) database (MOsDB;
MOsDB: an integrated information resource for rice genomics (2003)
Karlowski, Wojciech M., Schoof, Heiko, Janakiraman, Vijayalakshmi, Stuempflen, Volker, Mayer, Klaus F. X.
The MIPS Rice (Oryza sativa) database (MOsDB; http://mips.gsf.de/proj/rice) provides a comprehensive data collection dedicated to the genome information of rice. Rice (O. sativa L.) is one of the...
Increasing numbers of whole-genome sequences are available, but to interpret them fully requires more than listing all genes. Genome databases are faced with the challenges of integrating...
Heiko Schoof, Rebecca Ernst, Vladimir Nazarov, Lukas Pfeifer, Hans-werner Mewes
integrated biological knowledge resource for plant genomics
Schoof, Heiko, Zaccaria, Paolo, Gundlach, Heidrun, Lemcke, Kai, Rudd, Stephen, Kolesov, Grigory, ...
Arabidopsis thaliana is the first plant for which the complete genome has been sequenced and published. Annotation of complex eukaryotic genomes requires more than the assignment of genetic elements...
Regulation der Sprossmeristemorganisation von Arabidopsis thaliana durch Wuschel und Zwille / (2000)
Thesis (doctoral)--Eberhard-Karls-Universität zu Tübingen, 2000.
Schoof, Heiko, Zaccaria, Paolo, Gundlach, Heidrun, Lemcke, Kai, Rudd, Stephen, Kolesov, Grigory, ...
Arabidopsis thaliana is the first plant for which the complete genome has been sequenced and published. Annotation of complex eukaryotic genomes requires more than the assignment of genetic elements...
MOsDB: an integrated information resource for rice genomics
Karlowski, Wojciech M., Schoof, Heiko, Janakiraman, Vijayalakshmi, Stuempflen, Volker, Mayer, Klaus F. X.
The MIPS Rice (Oryza sativa) database (MOsDB; http://mips.gsf.de/proj/rice) provides a comprehensive data collection dedicated to the genome information of rice. Rice (O. sativa L.) is one of the...
Schoof, Heiko, Ernst, Rebecca, Nazarov, Vladimir, Pfeifer, Lukas, Mewes, Hans-Werner, Mayer, Klaus F. X.
Arabidopsis thaliana is the most widely studied model plant. Functional genomics is intensively underway in many laboratories worldwide. Beyond the basic annotation of the primary sequence data, the...
PlantMarkers—a database of predicted molecular markers from plants
Rudd, Stephen, Schoof, Heiko, Mayer, Klaus
Molecular markers are required in a broad spectrum of gene screening approaches, ranging from gene-mapping within traditional ‘forward’-genetics approaches through QTL identification studies to...
Wilkinson, Mark, Schoof, Heiko, Ernst, Rebecca, Haase, Dirk
The burden of noninteroperability between on-line genomic resources is increasingly the rate-limiting step in large-scale genomic analysis. BioMOBY is a biological Web Service interoperability...
Schoof, Heiko, Spannagl, Manuel, Yang, Li, Ernst, Rebecca, Gundlach, Heidrun, Haase, Dirk, ...
With several plant genomes sequenced, the power of comparative genome analysis can now be applied. However, genome-scale cross-species analyses are limited by the effort for data integration. To...
Schoof, Heiko, Zaccaria, Paolo, Gundlach, Heidrun, Lemcke, Kai, Rudd, Stephen, Kolesov, Grigory, ...
Arabidopsis thaliana is the first plant for which the complete genome has been sequenced and published. Annotation of complex eukaryotic genomes requires more than the assignment of genetic elements...
MOsDB: an integrated information resource for rice genomics
Karlowski, Wojciech M., Schoof, Heiko, Janakiraman, Vijayalakshmi, Stuempflen, Volker, Mayer, Klaus F. X.
The MIPS Rice (Oryza sativa) database (MOsDB; http://mips.gsf.de/proj/rice) provides a comprehensive data collection dedicated to the genome information of rice. Rice (O. sativa L.) is one of the...
Schoof, Heiko, Ernst, Rebecca, Nazarov, Vladimir, Pfeifer, Lukas, Mewes, Hans-Werner, Mayer, Klaus F. X.
Arabidopsis thaliana is the most widely studied model plant. Functional genomics is intensively underway in many laboratories worldwide. Beyond the basic annotation of the primary sequence data, the...
PlantMarkers—a database of predicted molecular markers from plants
Rudd, Stephen, Schoof, Heiko, Mayer, Klaus
Molecular markers are required in a broad spectrum of gene screening approaches, ranging from gene-mapping within traditional ‘forward’-genetics approaches through QTL identification studies to...
Wilkinson, Mark, Schoof, Heiko, Ernst, Rebecca, Haase, Dirk
The burden of noninteroperability between on-line genomic resources is increasingly the rate-limiting step in large-scale genomic analysis. BioMOBY is a biological Web Service interoperability...
Schoof, Heiko, Spannagl, Manuel, Yang, Li, Ernst, Rebecca, Gundlach, Heidrun, Haase, Dirk, ...
With several plant genomes sequenced, the power of comparative genome analysis can now be applied. However, genome-scale cross-species analyses are limited by the effort for data integration. To...
Legume genome evolution viewed through the Medicago truncatula and Lotus japonicus genomes
Cannon, Steven B., Sterck, Lieven, Rombauts, Stephane, Sato, Shusei, Cheung, Foo, Gouzy, Jérôme, ...
Genome sequencing of the model legumes, Medicago truncatula and Lotus japonicus, provides an opportunity for large-scale sequence-based comparison of two genomes in the same plant family. Here we...
MIPSPlantsDB—plant database resource for integrative and comparative plant genome research
Spannagl, Manuel, Noubibou, Octave, Haase, Dirk, Yang, Li, Gundlach, Heidrun, Hindemitt, Tobias, ...
Genome-oriented plant research delivers rapidly increasing amount of plant genome data. Comprehensive and structured information resources are required to structure and communicate genome and...
Itoh, Takeshi, Tanaka, Tsuyoshi, Barrero, Roberto A., Yamasaki, Chisato, Fujii, Yasuyuki, Hilton, Phillip B., ...
We present here the annotation of the complete genome of rice Oryza sativa L. ssp. japonica cultivar Nipponbare. All functional annotations for proteins and non-protein-coding RNA (npRNA) candidates...
Increasing numbers of whole-genome sequences are available, but to interpret them fully requires more than listing all genes. Genome databases are faced with the challenges of integrating...