Comparative methods in R hackathon (2008)
Brian O'Meara, Michael Alfaro, Charles Bell, Benjamin Bolker, Marguerite Butler, Peter Cowan, ...
The R statistical analysis package has emerged as a popular platform for implementation of powerful comparative methods to understand the evolution of organismal traits and diversification. A...
I present BioSQL, a generic and highly extensible relational model for storing biological sequences, sequence clusters, genes, sequence features, sequence and feature annotation, and ontology terms....
The 2006 NESCent Phyloinformatics Hackathon: A Field Report (2007)
Hilmar Lapp, Sendu Bala, James P. Balhoff, Amy Bouck, Naohisa Goto, Mark Holder, ...
In December, 2006, a group of 26 software developers from some of the most widely used life science programming toolkits and phylogenetic software projects converged on Durham, North Carolina, for a...
The 2006 NESCent Phyloinformatics Hackathon: A Field Report (2007)
Hilmar Lapp, Sendu Bala, James P. Balhoff, Amy Bouck, Naohisa Goto, Mark Holder, ...
In December, 2006, a group of 26 software developers from some of the most widely used life science programming toolkits and phylogenetic software projects converged on Durham, North Carolina, for a...
The Bioperl Toolkit: Perl Modules for the Life Sciences
Stajich, Jason E., Block, David, Boulez, Kris, Brenner, Steven E., Chervitz, Stephen A., Dagdigian, Chris, ...
The Bioperl project is an international open-source collaboration of biologists, bioinformaticians, and computer scientists that has evolved over the past 7 yr into the most comprehensive library of...
Applications of a Rat Multiple Tissue Gene Expression Data Set
Walker, John R., Su, Andrew I., Self, David W., Hogenesch, John B., Lapp, Hilmar, Maier, Rainer, ...
With the sequencing and assembly of the rat genome comes the difficult task of assigning functions to genes. Tissue localization of gene expression gives some information about the potential role of...
A gene atlas of the mouse and human protein-encoding transcriptomes
Su, Andrew I., Wiltshire, Tim, Batalov, Serge, Lapp, Hilmar, Ching, Keith A., Block, David, ...
The tissue-specific pattern of mRNA expression can indicate important clues about gene function. High-density oligonucleotide arrays offer the opportunity to examine patterns of gene expression on a...
Large-Scale Profiling of Rab GTPase Trafficking Networks: The MembromeD⃞
Gurkan, Cemal, Lapp, Hilmar, Alory, Christelle, Su, Andrew I., Hogenesch, John B., Balch, William E.
Rab GTPases and SNARE fusion proteins direct cargo trafficking through the exocytic and endocytic pathways of eukaryotic cells. We have used steady state mRNA expression profiling and computational...
Data and animal management software for large-scale phenotype screening
Ching, Keith A., Cooke, Michael P., Tarantino, Lisa M., Lapp, Hilmar
The mouse N-ethyl-N-nitrosourea (ENU) mutagenesis program at the Genomics Institute of the Novartis Research Foundation (GNF) uses MouseTRACS to analyze phenotype screens and manage animal husbandry....
The Bioperl Toolkit: Perl Modules for the Life Sciences
Stajich, Jason E., Block, David, Boulez, Kris, Brenner, Steven E., Chervitz, Stephen A., Dagdigian, Chris, ...
The Bioperl project is an international open-source collaboration of biologists, bioinformaticians, and computer scientists that has evolved over the past 7 yr into the most comprehensive library of...
Applications of a Rat Multiple Tissue Gene Expression Data Set
Walker, John R., Su, Andrew I., Self, David W., Hogenesch, John B., Lapp, Hilmar, Maier, Rainer, ...
With the sequencing and assembly of the rat genome comes the difficult task of assigning functions to genes. Tissue localization of gene expression gives some information about the potential role of...
A gene atlas of the mouse and human protein-encoding transcriptomes
Su, Andrew I., Wiltshire, Tim, Batalov, Serge, Lapp, Hilmar, Ching, Keith A., Block, David, ...
The tissue-specific pattern of mRNA expression can indicate important clues about gene function. High-density oligonucleotide arrays offer the opportunity to examine patterns of gene expression on a...
Large-Scale Profiling of Rab GTPase Trafficking Networks: The MembromeD⃞
Gurkan, Cemal, Lapp, Hilmar, Alory, Christelle, Su, Andrew I., Hogenesch, John B., Balch, William E.
Rab GTPases and SNARE fusion proteins direct cargo trafficking through the exocytic and endocytic pathways of eukaryotic cells. We have used steady state mRNA expression profiling and computational...
Data and animal management software for large-scale phenotype screening
Ching, Keith A., Cooke, Michael P., Tarantino, Lisa M., Lapp, Hilmar
The mouse N-ethyl-N-nitrosourea (ENU) mutagenesis program at the Genomics Institute of the Novartis Research Foundation (GNF) uses MouseTRACS to analyze phenotype screens and manage animal husbandry....