Himadri B. Pakrasi

Publication List Details

Period

1992 - 2009

Number

43

Co-Authors

Effect of continuous light on diurnal rhythms in Cyanothecesp. ATCC 51142 (2009)

Elvitigala, Thanura, Stöckel, Jana, Ghosh, Bijoy K, Pakrasi, Himadri B

Abstract Background Life on earth is strongly affected by alternating day and night cycles. Accordingly, many organisms have evolved an internal timekeeping system with a period of approximately 24...

Properties of Mutants of Synechocystis sp. Strain PCC 6803 Lacking Inorganic Carbon Sequestration Systems (2008)

Xu, Min, Bernát, Gábor, Singh, Abhay, Mi, Hualing, Rögner, Matthias, Pakrasi, Himadri B., ...

A mutant (Δ5) of Synechocystis sp. strain PCC 6803 constructed by inactivating five inorganic carbon sequestration systems did not take up CO2 or HCO3− and was unable to grow in air with or...

Identification and Localization of the CupB Protein Involved in Constitutive CO2 Uptake in the Cyanobacterium, Synechocystis sp. Strain PCC 6803 (2008)

Xu, Min, Ogawa, Teruo, Pakrasi, Himadri B., Mi, Hualing

Antibody against cMyc cross-reacted strongly with the CupB protein tagged with His6-cMyc (HM) in thylakoid membrane of Synechocystis sp. strain PCC 6803 but only faintly with the cytoplasmic membrane...

Characterization of two potentially universal turn motifs that shape the repeated five-residues fold--Crystal structure of a lumenal pentapeptide repeat protein from Cyanothece 51142 (2006)

Buchko, Garry W., Ni, Shuisong, Robinson, Howard, Welsh, Eric A., Pakrasi, Himadri B., Kennedy, Michael A.

The genome of the diurnal cyanobacterium Cyanothece sp. PCC 51142 has recently been sequenced and observed to contain 35 pentapeptide repeat proteins (PRPs). These proteins, while present throughout...

Response to Oxidative Stress Involves a Novel Peroxiredoxin Gene in the Unicellular Cyanobacterium Synechocystis sp. PCC 6803 (2004)

Kobayashi, Mari, Ishizuka, Tomokazu, Katayama, Mitsunori, Kanehisa, Minoru, Bhattacharyya-Pakrasi, Maitrayee, Pakrasi, Himadri B., ...

Exposure to methyl viologen in the presence of light facilitates the production of superoxide that gives severe damage on photosynthetic apparatus as well as many cellular processes in cyanobacteria...

Low-Molecular-Mass Polypeptide Components of a Photosystem II Preparation from the Thermophilic Cyanobacterium Thermosynechococcus vulcanus (2002)

Kashino, Yasuhiro, Koike, Hiroyuki, Yoshio, Maki, Egashira, Hirokazu, Ikeuchi, Masahiko, Pakrasi, Himadri B., ...

Using a recently introduced electrophoresis system [Kashino et al. (2001) Electrophoresis 22: 1004], components of low-molecular-mass polypeptides were analyzed in detail in photosystem II...

A Novel 3.5 kDa Protein Component of Cyanobacterial Photosystem I Complexes (1992)

Ikeuchi, Masahiko, Sonoike, Kintake, Koike, Hiroyuki, Pakrasi, Himadri B., Inoue, Yorinao

A novel protein component of 3.5 kDa was detected in photosystem I complexes prepared from several cyanobacteria, viz. Synechococcus vulcanus, Synechococcus elongotus BP-1, Synechococcus sp. FCC 7002...

Structural model of cytochrome b559 in photosystem II based on a mutant with genetically fused subunits

McNamara, Vincent P., Sutterwala, Fayyaz S., Pakrasi, Himadri B., Whitmarsh, John

Photosystem II is a reaction center protein complex located in photosynthetic membranes of plants, algae, and cyanobacteria. Using light energy, photosystem II catalyzes the oxidation of water and...

The BtpA Protein Stabilizes the Reaction Center Proteins of Photosystem I in the Cyanobacterium Synechocystis sp. PCC 6803 at Low Temperature1

Zak, Elena, Pakrasi, Himadri B.

Specific inhibition of photosystem I (PSI) was observed under low-temperature conditions in the cyanobacterium Synechocystis sp. strain PCC 6803. Growth at 20°C caused inhibition of PSI activity and...

The Carboxyl-Terminal Extension of the Precursor D1 Protein of Photosystem II Is Required for Optimal Photosynthetic Performance of the Cyanobacterium Synechocystis sp. PCC 68031

Ivleva, Natalia B., Shestakov, Sergey V., Pakrasi, Himadri B.

The D1 protein is an integral component of the photosystem II reaction center complex. In the cyanobacterium Synechocystis sp. PCC 6803, D1 is synthesized with a short 16-amino acids-long...

The PsbY Protein Is Not Essential for Oxygenic Photosynthesis in the Cyanobacterium Synechocystis sp. PCC 68031

Meetam, Metha, Keren, Nir, Ohad, Itzhak, Pakrasi, Himadri B.

A tetra-manganese cluster in the photosystem II (PSII) pigment-protein complex plays a critical role in the photosynthetic oxygen evolution process. PsbY, a small membrane-spanning polypeptide, has...

The initial steps of biogenesis of cyanobacterial photosystems occur in plasma membranes

Zak, Elena, Norling, Birgitta, Maitra, Radhashree, Huang, Fang, Andersson, Bertil, Pakrasi, Himadri B.

During oxygenic photosynthesis in cyanobacteria and chloroplasts of plants and eukaryotic algae, conversion of light energy to biologically useful chemical energy occurs in the specialized thylakoid...

Membrane Topology of MntB, the Transmembrane Protein Component of an ABC Transporter System for Manganese in the Cyanobacterium Synechocystis sp. Strain PCC 6803

Bartsevich, Victor V., Pakrasi, Himadri B.

The structure of the membrane protein MntB, a component of a manganese transporter system in Synechocystis sp. strain PCC 6803, was examined with a series of fusions to the reporter proteins alkaline...

Critical Roles of Bacterioferritins in Iron Storage and Proliferation of Cyanobacteria1[w]

Keren, Nir, Aurora, Rajeev, Pakrasi, Himadri B.

Cyanobacteria are key contributors to global photosynthetic productivity, and iron availability is essential for cyanobacterial proliferation. While iron is abundant in the earth's crust, its unique...

Homologs of Plant PsbP and PsbQ Proteins Are Necessary for Regulation of Photosystem II Activity in the Cyanobacterium Synechocystis 6803W⃞

Thornton, Leeann E., Ohkawa, Hiroshi, Roose, Johnna L., Kashino, Yasuhiro, Keren, Nir, Pakrasi, Himadri B.

The mechanism of oxygen evolution by photosystem II (PSII) has remained highly conserved during the course of evolution from ancestral cyanobacteria to green plants. A cluster of manganese, calcium,...

A Highly Active Oxygen-Evolving Photosystem II Preparation from the Cyanobacterium Anacystis nidulans1

Pakrasi, Himadri B., Sherman, Louis A.

A highly active O2-evolving Photosystem (PS)-II fraction has been isolated from the cyanobacterium, Anacystis nidulans R2, using an isolation buffer containing high concentrations of sucrose and...

Membrane Development in the Cyanobacterium, Anacystis nidulans, during Recovery from Iron Starvation 1

Pakrasi, Himadri B., Goldenberg, Ann, Sherman, Louis A.

Deprivation of iron from the growth medium results in physiological as well as structural changes in the unicellular cyanobacterium Anacystis nidulans R2. Important among these changes are...

An Inquiry into Protein Structure and Genetic Disease: Introducing Undergraduates to Bioinformatics in a Large Introductory Course

Bednarski, April E, Elgin, Sarah C.R, Pakrasi, Himadri B

This inquiry-based lab is designed around genetic diseases with a focus on protein structure and function. To allow students to work on their own investigatory projects, 10 projects on 10 different...

Psb29, a Conserved 22-kD Protein, Functions in the Biogenesis of Photosystem II Complexes in Synechocystis and ArabidopsisW⃞

Keren, Nir, Ohkawa, Hiroshi, Welsh, Eric A., Liberton, Michelle, Pakrasi, Himadri B.

Photosystem II (PSII), the enzyme responsible for photosynthetic oxygen evolution, is a rapidly turned over membrane protein complex. However, the factors that regulate biogenesis of PSII are poorly...

Structural model of cytochrome b559 in photosystem II based on a mutant with genetically fused subunits

McNamara, Vincent P., Sutterwala, Fayyaz S., Pakrasi, Himadri B., Whitmarsh, John

Photosystem II is a reaction center protein complex located in photosynthetic membranes of plants, algae, and cyanobacteria. Using light energy, photosystem II catalyzes the oxidation of water and...

The BtpA Protein Stabilizes the Reaction Center Proteins of Photosystem I in the Cyanobacterium Synechocystis sp. PCC 6803 at Low Temperature1

Zak, Elena, Pakrasi, Himadri B.

Specific inhibition of photosystem I (PSI) was observed under low-temperature conditions in the cyanobacterium Synechocystis sp. strain PCC 6803. Growth at 20°C caused inhibition of PSI activity and...

The Carboxyl-Terminal Extension of the Precursor D1 Protein of Photosystem II Is Required for Optimal Photosynthetic Performance of the Cyanobacterium Synechocystis sp. PCC 68031

Ivleva, Natalia B., Shestakov, Sergey V., Pakrasi, Himadri B.

The D1 protein is an integral component of the photosystem II reaction center complex. In the cyanobacterium Synechocystis sp. PCC 6803, D1 is synthesized with a short 16-amino acids-long...

The PsbY Protein Is Not Essential for Oxygenic Photosynthesis in the Cyanobacterium Synechocystis sp. PCC 68031

Meetam, Metha, Keren, Nir, Ohad, Itzhak, Pakrasi, Himadri B.

A tetra-manganese cluster in the photosystem II (PSII) pigment-protein complex plays a critical role in the photosynthetic oxygen evolution process. PsbY, a small membrane-spanning polypeptide, has...

The initial steps of biogenesis of cyanobacterial photosystems occur in plasma membranes

Zak, Elena, Norling, Birgitta, Maitra, Radhashree, Huang, Fang, Andersson, Bertil, Pakrasi, Himadri B.

During oxygenic photosynthesis in cyanobacteria and chloroplasts of plants and eukaryotic algae, conversion of light energy to biologically useful chemical energy occurs in the specialized thylakoid...

Membrane Topology of MntB, the Transmembrane Protein Component of an ABC Transporter System for Manganese in the Cyanobacterium Synechocystis sp. Strain PCC 6803

Bartsevich, Victor V., Pakrasi, Himadri B.

The structure of the membrane protein MntB, a component of a manganese transporter system in Synechocystis sp. strain PCC 6803, was examined with a series of fusions to the reporter proteins alkaline...

Critical Roles of Bacterioferritins in Iron Storage and Proliferation of Cyanobacteria1[w]

Keren, Nir, Aurora, Rajeev, Pakrasi, Himadri B.

Cyanobacteria are key contributors to global photosynthetic productivity, and iron availability is essential for cyanobacterial proliferation. While iron is abundant in the earth's crust, its unique...

Homologs of Plant PsbP and PsbQ Proteins Are Necessary for Regulation of Photosystem II Activity in the Cyanobacterium Synechocystis 6803W⃞

Thornton, Leeann E., Ohkawa, Hiroshi, Roose, Johnna L., Kashino, Yasuhiro, Keren, Nir, Pakrasi, Himadri B.

The mechanism of oxygen evolution by photosystem II (PSII) has remained highly conserved during the course of evolution from ancestral cyanobacteria to green plants. A cluster of manganese, calcium,...

A Highly Active Oxygen-Evolving Photosystem II Preparation from the Cyanobacterium Anacystis nidulans1

Pakrasi, Himadri B., Sherman, Louis A.

A highly active O2-evolving Photosystem (PS)-II fraction has been isolated from the cyanobacterium, Anacystis nidulans R2, using an isolation buffer containing high concentrations of sucrose and...

Membrane Development in the Cyanobacterium, Anacystis nidulans, during Recovery from Iron Starvation 1

Pakrasi, Himadri B., Goldenberg, Ann, Sherman, Louis A.

Deprivation of iron from the growth medium results in physiological as well as structural changes in the unicellular cyanobacterium Anacystis nidulans R2. Important among these changes are...

An Inquiry into Protein Structure and Genetic Disease: Introducing Undergraduates to Bioinformatics in a Large Introductory Course

Bednarski, April E, Elgin, Sarah C.R, Pakrasi, Himadri B

This inquiry-based lab is designed around genetic diseases with a focus on protein structure and function. To allow students to work on their own investigatory projects, 10 projects on 10 different...

Psb29, a Conserved 22-kD Protein, Functions in the Biogenesis of Photosystem II Complexes in Synechocystis and ArabidopsisW⃞

Keren, Nir, Ohkawa, Hiroshi, Welsh, Eric A., Liberton, Michelle, Pakrasi, Himadri B.

Photosystem II (PSII), the enzyme responsible for photosynthetic oxygen evolution, is a rapidly turned over membrane protein complex. However, the factors that regulate biogenesis of PSII are poorly...

Atomic structure of a nitrate-binding protein crucial for photosynthetic productivity

Koropatkin, Nicole M., Pakrasi, Himadri B., Smith, Thomas J.

Cyanobacteria, blue-green algae, are the most abundant autotrophs in aquatic environments and form the base of all aquatic food chains by fixing carbon and nitrogen into cellular biomass. The single...

The PsbQ protein defines cyanobacterial Photosystem II complexes with highest activity and stability

Roose, Johnna L., Kashino, Yasuhiro, Pakrasi, Himadri B.

Light-induced conversion of water to molecular oxygen by Photosystem II (PSII) is one of the most important enzymatic reactions in the biosphere. PSII is a multisubunit membrane protein complex with...

Characterization of two potentially universal turn motifs that shape the repeated five-residues fold—Crystal structure of a lumenal pentapeptide repeat protein from Cyanothece 51142

Buchko, Garry W., Ni, Shuisong, Robinson, Howard, Welsh, Eric A., Pakrasi, Himadri B., Kennedy, Michael A.

The genome of the diurnal cyanobacterium Cyanothece sp. PCC 51142 has recently been sequenced and observed to contain 35 pentapeptide repeat proteins (PRPs). These proteins, while present throughout...

Differential Transcriptional Analysis of the Cyanobacterium Cyanothece sp. Strain ATCC 51142 during Light-Dark and Continuous-Light Growth▿ †

Toepel, Jörg, Welsh, Eric, Summerfield, Tina C., Pakrasi, Himadri B., Sherman, Louis A.

We analyzed the metabolic rhythms and differential gene expression in the unicellular, diazotrophic cyanobacterium Cyanothece sp. strain ATCC 51142 under N2-fixing conditions after a shift from...

Global transcriptomic analysis of Cyanothece 51142 reveals robust diurnal oscillation of central metabolic processes

Stöckel, Jana, Welsh, Eric A., Liberton, Michelle, Kunnvakkam, Rangesh, Aurora, Rajeev, Pakrasi, Himadri B.

Cyanobacteria are photosynthetic organisms and are the only prokaryotes known to have a circadian lifestyle. Unicellular diazotrophic cyanobacteria such as Cyanothece sp. ATCC 51142 produce oxygen...

Cloning, expression, crystallization and preliminary crystallographic analysis of a pentapeptide-repeat protein (Rfr23) from the bacterium Cyanothece 51142

Buchko, Garry W., Robinson, Howard, Ni, Shuisong, Pakrasi, Himadri B., Kennedy, Michael A.

A construct of the Cyanothece 51142 pentapeptide-repeat protein Rfr23 (Thr27–Asp174) has been cloned, overexpressed in E. coli and purified. Diffraction data that extend to 2.5 Å and preliminary...

The genome of Cyanothece 51142, a unicellular diazotrophic cyanobacterium important in the marine nitrogen cycle

Welsh, Eric A., Liberton, Michelle, Stöckel, Jana, Loh, Thomas, Elvitigala, Thanura, Wang, Chunyan, ...

Unicellular cyanobacteria have recently been recognized for their contributions to nitrogen fixation in marine environments, a function previously thought to be filled mainly by filamentous...

Integration of Carbon and Nitrogen Metabolism with Energy Production Is Crucial to Light Acclimation in the Cyanobacterium Synechocystis1[W][OA]

Singh, Abhay K., Elvitigala, Thanura, Bhattacharyya-Pakrasi, Maitrayee, Aurora, Rajeev, Ghosh, Bijoy, Pakrasi, Himadri B.

Light drives the production of chemical energy and reducing equivalents in photosynthetic organisms required for the assimilation of essential nutrients. This process also generates strong oxidants...