Bos taurusgenome assembly (2009)
Liu, Yue, Qin, Xiang, Song, Xing-Zhi, Jiang, Huaiyang, Shen, Yufeng, Durbin, K James, ...
Abstract Background We present here the assembly of the bovine genome. The assembly method combines the BAC plus WGS local assembly used for the rat and sea urchin with the whole genome shotgun (WGS)...
Bourgogne, Agathe, Garsin, Danielle A, Qin, Xiang, Singh, Kavindra V, Sillanpaa, Jouko, Yerrapragada, Shailaja, ...
Abstract Background Enterococcus faecalis has emerged as a major hospital pathogen. To explore its diversity, we sequenced E. faecalis strain OG1RF, which is commonly used for molecular manipulation...
Highlander, Sarah K, Hultén, Kristina G, Qin, Xiang, Jiang, Huaiyang, Yerrapragada, Shailaja, Mason, Edward O, ...
Abstract Background Community acquired (CA) methicillin-resistant Staphylococcus aureus (MRSA) increasingly causes disease worldwide. USA300 has emerged as the predominant clone causing superficial...
Margulies, Elliott H., Cooper, Gregory M., Asimenos, George, Thomas, Daryl J., Dewey, Colin N., Siepel, Adam, ...
A key component of the ongoing ENCODE project involves rigorous comparative sequence analyses for the initially targeted 1% of the human genome. Here, we present orthologous sequence generation,...
Insights into social insects from the genome of the honeybee Apis mellifera (2006)
Robinson, Gene E, Gibbs, Richard A, Worley, Kim C, Evans, Jay D, Maleszka, Ryszard, ...
Here we report the genome sequence of the honeybee Apis mellifera, a key model for social behaviour and essential to global ecology through pollination. Compared with other sequenced insect genomes,...
Community annotation: Procedures, protocols, and supporting tools (2006)
Elsik, Christine G., Worley, Kim C., Zhang, Lan, Milshina, Natalia V., Jiang, Huaiyang, Reese, Justin T., ...
Investigators at the Baylor College of Medicine Human Genome Sequencing Center (BCM–HGSC) and BeeBase organized a community-wide effort to manually annotate the honey bee (Apis mellifera) genome....
Community annotation: Procedures, protocols, and supporting tools (2006)
Elsik, Christine G., Worley, Kim C., Zhang, Lan, Milshina, Natalia V., Jiang, Huaiyang, Reese, Justin T., ...
Investigators at the Baylor College of Medicine Human Genome Sequencing Center (BCM–HGSC) and BeeBase organized a community-wide effort to manually annotate the honey bee (Apis mellifera) genome....
Michael P. Mcleod, Xiang Qin, Or E. Karpathy, Jason Gioia, Sarah K. Highl, George E. Fox, ...
Rickettsia typhi, the causative agent of murine typhus, is an obligate intracellular bacterium with a life cycle involving both vertebrate and invertebrate hosts. Here we present the complete genome...
Complete Genome Sequence of Rickettsia typhi and Comparison with Sequences of Other Rickettsiae
McLeod, Michael P., Qin, Xiang, Karpathy, Sandor E., Gioia, Jason, Highlander, Sarah K., Fox, George E., ...
Rickettsia typhi, the causative agent of murine typhus, is an obligate intracellular bacterium with a life cycle involving both vertebrate and invertebrate hosts. Here we present the complete genome...
Complete Genome Sequence of Rickettsia typhi and Comparison with Sequences of Other Rickettsiae
McLeod, Michael P., Qin, Xiang, Karpathy, Sandor E., Gioia, Jason, Highlander, Sarah K., Fox, George E., ...
Rickettsia typhi, the causative agent of murine typhus, is an obligate intracellular bacterium with a life cycle involving both vertebrate and invertebrate hosts. Here we present the complete genome...
Petrosino, Joseph F., Xiang, Qin, Karpathy, Sandor E., Jiang, Huaiyang, Yerrapragada, Shailaja, Liu, Yamei, ...
The γ-proteobacterium Francisella tularensis is one of the most infectious human pathogens, and the highly virulent organism F. tularensis subsp. tularensis (type A) and less virulent organism F....
Gioia, Jason, Qin, Xiang, Jiang, Huaiyang, Clinkenbeard, Kenneth, Lo, Reggie, Liu, Yamei, ...
The draft genome sequence of Mannheimia haemolytica A1, the causative agent of bovine respiratory disease complex (BRDC), is presented. Strain ATCC BAA-410, isolated from the lung of a calf with...
Karpathy, Sandor E., Qin, Xiang, Gioia, Jason, Jiang, Huaiyang, Liu, Yamei, Petrosino, Joseph F., ...
Fusobacterium nucleatum is a prominent member of the oral microbiota and is a common cause of human infection. F. nucleatum includes five subspecies: polymorphum, nucleatum, vincentii, fusiforme, and...
Paradoxical DNA Repair and Peroxide Resistance Gene Conservation in Bacillus pumilus SAFR-032
Gioia, Jason, Yerrapragada, Shailaja, Qin, Xiang, Jiang, Huaiyang, Igboeli, Okezie C., Muzny, Donna, ...
Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome
Margulies, Elliott H., Cooper, Gregory M., Asimenos, George, Thomas, Daryl J., Dewey, Colin N., Siepel, Adam, ...
A key component of the ongoing ENCODE project involves rigorous comparative sequence analyses for the initially targeted 1% of the human genome. Here, we present orthologous sequence generation,...
Highlander, Sarah K, Hultén, Kristina G, Qin, Xiang, Jiang, Huaiyang, Yerrapragada, Shailaja, Mason, Edward O, ...
Large scale variation in Enterococcus faecalis illustrated by the genome analysis of strain OG1RF
Bourgogne, Agathe, Garsin, Danielle A, Qin, Xiang, Singh, Kavindra V, Sillanpaa, Jouko, Yerrapragada, Shailaja, ...
A comparison of two strains of the hospital pathogen Enterococcus faecalis suggests that mediators of virulence differ between strains and that virulence does not depend on mobile gene elements