Kim, HyeRan, Choi, Su, Bae, Jina, Hong, Chang, Lee, Seo, Hossain, Md, ...
Abstract Background In view of the immense value of Brassica rapa in the fields of agriculture and molecular biology, the multinational Brassica rapa Genome Sequencing Project (BrGSP) was launched in...
Nelson, William, Luo, Meizhong, Ma, Jianxin, Estep, Matt, Estill, James, He, Ruifeng, ...
Abstract Background Many plant genomes are resistant to whole-genome assembly due to an abundance of repetitive sequence, leading to the development of gene-rich sequencing techniques. Two such...
Bioinformatics Whole-Genome Validation of High-Information-Content (2008)
William M. Nelson, Arvindk. Bharti, Fusheng Wei, Galina Fuks, Hyeran Kim, Rod A. Wing, ...
Fluorescent-based high-information-content fingerprinting (HICF) techniques have recently been developed for physical mapping. These techniques make use of automated capillary DNA sequencing...
Kim, HyeRan, Hurwitz, Bonnie, Yu, Yeisoo, Collura, Kristi, Gill, Navdeep, SanMiguel, Phillip, ...
Abstract We describe the establishment and analysis of a genus-wide comparative framework composed of 12 bacterial artificial chromosome fingerprint and end-sequenced physical maps representing the...
Zuccolo, Andrea, Sebastian, Aswathy, Talag, Jayson, Yu, Yeisoo, Kim, HyeRan, Collura, Kristi, ...
Abstract Background The genus Oryza is composed of 10 distinct genome types, 6 diploid and 4 polyploid, and includes the world's most important food crop – rice ( Oryza sativa [AA]). Genome size...
Physical and Genetic Structure of the Maize Genome Reflects Its Complex Evolutionary History (2007)
Fusheng Wei, Ed Coe, William Nelson, Arvind K. Bharti, Fred Engler, Ed Butler, ...
Maize (Zea mays L.) is one of the most important cereal crops and a model for the study of genetics, evolution, and domestication. To better understand maize genome organization and to build a...
Physical and Genetic Structure of the Maize Genome Reflects its Complex Evolutionary History (2007)
Fusheng Wei, Ed Coe, William Nelson, Arvind K. Bharti, Fred Engler, Ed Butler, ...
Maize (Zea mays L.) is one of the most important cereal crops and a model for the study of genetics, evolution, and domestication. To better understand maize genome organization and to build a...
Luo, Meizhong, Kim, HyeRan, Kudrna, Dave, Sisneros, Nicholas B, Lee, So-Jeong, Mueller, Christopher, ...
Abstract Background Sharks are members of the taxonomic class Chondrichthyes, the oldest living jawed vertebrates. Genomic studies of this group, in comparison to representative species in other...
A global assembly of cotton ESTs (2006)
Udall, Joshua A., Swanson, Jordan M., Haller, Karl, Rapp, Ryan A., Sparks, Michael E., Hatfield, Jamie, ...
Approximately 185,000 Gossypium EST sequences comprising >94,800,000 nucleotides were amassed from 30 cDNA libraries constructed from a variety of tissues and organs under a range of conditions,...
Hawkins, Jennifer S., Kim, HyeRan, Nason, John D., Wing, Rod A., Wendel, Jonathan F.
The DNA content of eukaryotic nuclei (C-value) varies ∼200,000-fold, but there is only a ∼20-fold variation in the number of protein-coding genes. Hence, most C-value variation is ascribed to the...
Piegu, Benoit, Guyot, Romain, Picault, Nathalie, Roulin, Anne, Saniyal, Abhijit, Kim, Hyeran, ...
Retrotransposons are the main components of eukaryotic genomes, representing up to 80% of some large plant genomes. These mobile elements transpose via a “copy and paste” mechanism, thus...
A global assembly of cotton ESTs (2006)
Udall, Joshua A., Swanson, Jordan M., Haller, Karl, Rapp, Ryan A., Sparks, Michael E., Hatfield, Jamie, ...
Approximately 185,000 Gossypium EST sequences comprising >94,800,000 nucleotides were amassed from 30 cDNA libraries constructed from a variety of tissues and organs under a range of conditions,...
Hawkins, Jennifer S., Kim, HyeRan, Nason, John D., Wing, Rod A., Wendel, Jonathan F.
The DNA content of eukaryotic nuclei (C-value) varies ∼200,000-fold, but there is only a ∼20-fold variation in the number of protein-coding genes. Hence, most C-value variation is ascribed to the...
Piegu, Benoit, Guyot, Romain, Picault, Nathalie, Roulin, Anne, Saniyal, Abhijit, Kim, Hyeran, ...
Retrotransposons are the main components of eukaryotic genomes, representing up to 80% of some large plant genomes. These mobile elements transpose via a “copy and paste” mechanism, thus...
Ammiraju, Jetty S.S., Luo, Meizhong, Goicoechea, José L., Wang, Wenming, Kudrna, Dave, Mueller, Christopher, ...
Rice (Oryza sativa L.) is the most important food crop in the world and a model system for plant biology. With the completion of a finished genome sequence we must now functionally characterize the...
Ammiraju, Jetty S.S., Luo, Meizhong, Goicoechea, José L., Wang, Wenming, Kudrna, Dave, Mueller, Christopher, ...
Rice (Oryza sativa L.) is the most important food crop in the world and a model system for plant biology. With the completion of a finished genome sequence we must now functionally characterize the...
Incongruent Patterns of Local and Global Genome Size Evolution in Cotton (2004)
Grover, Corrinne E., Kim, HyeRan, Wing, Rod A., Paterson, Andrew H., Wendel, Jonathan F.
Genome sizes in plants vary over several orders of magnitude, reflecting a combination of differentially acting local and global forces such as biases in indel accumulation and transposable element...
Incongruent Patterns of Local and Global Genome Size Evolution in Cotton (2004)
Grover, Corrinne E., Kim, HyeRan, Wing, Rod A., Paterson, Andrew H., Wendel, Jonathan F.
Genome sizes in plants vary over several orders of magnitude, reflecting a combination of differentially acting local and global forces such as biases in indel accumulation and transposable element...
Thesis (Ph. D.)--Clemson University, 2003.
An implementation of Karmarkars̕ algorithm /--by HyeRan Kim. (1987)
Thesis (M.S. in Computer Science)--Vanderbilt University, 1987.
An Integrated Physical and Genetic Map of the Rice Genome
Chen, Mingsheng, Presting, Gernot, Barbazuk, W. Brad, Goicoechea, Jose Luis, Blackmon, Barbara, Fang, Guangchen, ...
Rice was chosen as a model organism for genome sequencing because of its economic importance, small genome size, and syntenic relationship with other cereal species. We have constructed a bacterial...
Sohn, Eun Ju, Kim, Eol Sun, Zhao, Min, Kim, Soo Jin, Kim, Hyeran, Kim, Yong-Woo, ...
Rab proteins are members of the Ras superfamily of small GTP binding proteins and play important roles in various intracellular trafficking steps. We investigated the role of Rha1, an Arabidopsis...
Incongruent Patterns of Local and Global Genome Size Evolution in Cotton
Grover, Corrinne E., Kim, HyeRan, Wing, Rod A., Paterson, Andrew H., Wendel, Jonathan F.
Genome sizes in plants vary over several orders of magnitude, reflecting a combination of differentially acting local and global forces such as biases in indel accumulation and transposable element...
Actin Filaments Play a Critical Role in Vacuolar Trafficking at the Golgi Complex in Plant Cells
Kim, Hyeran, Park, Misoon, Kim, Soo Jin, Hwang, Inhwan
Actin filaments are thought to play an important role in intracellular trafficking in various eukaryotic cells. However, their involvement in intracellular trafficking in plant cells has not been...
Ammiraju, Jetty S.S., Luo, Meizhong, Goicoechea, José L., Wang, Wenming, Kudrna, Dave, Mueller, Christopher, ...
Rice (Oryza sativa L.) is the most important food crop in the world and a model system for plant biology. With the completion of a finished genome sequence we must now functionally characterize the...
Luo, Meizhong, Kim, HyeRan, Kudrna, Dave, Sisneros, Nicholas B, Lee, So-Jeong, Mueller, Christopher, ...
Whole-Genome Validation of High-Information-Content Fingerprinting1
Nelson, William M., Bharti, Arvind K., Butler, Ed, Wei, Fusheng, Fuks, Galina, Kim, HyeRan, ...
Fluorescent-based high-information-content fingerprinting (HICF) techniques have recently been developed for physical mapping. These techniques make use of automated capillary DNA sequencing...
A global assembly of cotton ESTs
Udall, Joshua A., Swanson, Jordan M., Haller, Karl, Rapp, Ryan A., Sparks, Michael E., Hatfield, Jamie, ...
Approximately 185,000 Gossypium EST sequences comprising >94,800,000 nucleotides were amassed from 30 cDNA libraries constructed from a variety of tissues and organs under a range of conditions,...
An Integrated Physical and Genetic Map of the Rice Genome
Chen, Mingsheng, Presting, Gernot, Barbazuk, W. Brad, Goicoechea, Jose Luis, Blackmon, Barbara, Fang, Guangchen, ...
Rice was chosen as a model organism for genome sequencing because of its economic importance, small genome size, and syntenic relationship with other cereal species. We have constructed a bacterial...
Sohn, Eun Ju, Kim, Eol Sun, Zhao, Min, Kim, Soo Jin, Kim, Hyeran, Kim, Yong-Woo, ...
Rab proteins are members of the Ras superfamily of small GTP binding proteins and play important roles in various intracellular trafficking steps. We investigated the role of Rha1, an Arabidopsis...
Incongruent Patterns of Local and Global Genome Size Evolution in Cotton
Grover, Corrinne E., Kim, HyeRan, Wing, Rod A., Paterson, Andrew H., Wendel, Jonathan F.
Genome sizes in plants vary over several orders of magnitude, reflecting a combination of differentially acting local and global forces such as biases in indel accumulation and transposable element...
Actin Filaments Play a Critical Role in Vacuolar Trafficking at the Golgi Complex in Plant Cells
Kim, Hyeran, Park, Misoon, Kim, Soo Jin, Hwang, Inhwan
Actin filaments are thought to play an important role in intracellular trafficking in various eukaryotic cells. However, their involvement in intracellular trafficking in plant cells has not been...
Whole-Genome Validation of High-Information-Content Fingerprinting1
Nelson, William M., Bharti, Arvind K., Butler, Ed, Wei, Fusheng, Fuks, Galina, Kim, HyeRan, ...
Fluorescent-based high-information-content fingerprinting (HICF) techniques have recently been developed for physical mapping. These techniques make use of automated capillary DNA sequencing...
Ammiraju, Jetty S.S., Luo, Meizhong, Goicoechea, José L., Wang, Wenming, Kudrna, Dave, Mueller, Christopher, ...
Rice (Oryza sativa L.) is the most important food crop in the world and a model system for plant biology. With the completion of a finished genome sequence we must now functionally characterize the...
A global assembly of cotton ESTs
Udall, Joshua A., Swanson, Jordan M., Haller, Karl, Rapp, Ryan A., Sparks, Michael E., Hatfield, Jamie, ...
Approximately 185,000 Gossypium EST sequences comprising >94,800,000 nucleotides were amassed from 30 cDNA libraries constructed from a variety of tissues and organs under a range of conditions,...
Luo, Meizhong, Kim, HyeRan, Kudrna, Dave, Sisneros, Nicholas B, Lee, So-Jeong, Mueller, Christopher, ...
Hawkins, Jennifer S., Kim, HyeRan, Nason, John D., Wing, Rod A., Wendel, Jonathan F.
The DNA content of eukaryotic nuclei (C-value) varies ∼200,000-fold, but there is only a ∼20-fold variation in the number of protein-coding genes. Hence, most C-value variation is ascribed to the...
Piegu, Benoit, Guyot, Romain, Picault, Nathalie, Roulin, Anne, Saniyal, Abhijit, Kim, Hyeran, ...
Retrotransposons are the main components of eukaryotic genomes, representing up to 80% of some large plant genomes. These mobile elements transpose via a “copy and paste” mechanism, thus...
Physical and Genetic Structure of the Maize Genome Reflects Its Complex Evolutionary History
Wei, Fusheng, Coe, Ed, Nelson, William, Bharti, Arvind K, Engler, Fred, Butler, Ed, ...
Maize (Zea mays L.) is one of the most important cereal crops and a model for the study of genetics, evolution, and domestication. To better understand maize genome organization and to build a...
Comparative Physical Mapping Between Oryza sativa (AA Genome Type) and O. punctata (BB Genome Type)
Kim, HyeRan, Miguel, Phillip San, Nelson, William, Collura, Kristi, Wissotski, Marina, Walling, Jason G., ...
A comparative physical map of the AA genome (Oryza sativa) and the BB genome (O. punctata) was constructed by aligning a physical map of O. punctata, deduced from 63,942 BAC end sequences (BESs) and...
Transposable element distribution, abundance and role in genome size variation in the genus Oryza
Zuccolo, Andrea, Sebastian, Aswathy, Talag, Jayson, Yu, Yeisoo, Kim, HyeRan, Collura, Kristi, ...
Miao, Yansong, Yan, Pak Kan, Kim, Hyeran, Hwang, Inhwan, Jiang, Liwen
We have previously demonstrated that vacuolar sorting receptor (VSR) proteins are concentrated on prevacuolar compartments (PVCs) in plant cells. PVCs in tobacco (Nicotiana tabacum) BY-2 cells are...
Lee, Gil-Je, Kim, Hyeran, Kang, Hyangju, Jang, Mihue, Lee, Dong Wook, Lee, Sookjin, ...
Members of the epsin family of proteins (epsins) are characterized by the presence of an epsin N-terminal homology (ENTH) domain. Epsins have been implicated in various protein-trafficking pathways...
Magnaporthe grisea Infection Triggers RNA Variation and Antisense Transcript Expression in Rice1[W]
Gowda, Malali, Li, Huameng, Jantasuriyarat, Chatchawan, Chen, Songbiao, Bellizzi, Maria, ...
Rice blast disease, caused by the fungal pathogen Magnaporthe grisea, is an excellent model system to study plant-fungal interactions and host defense responses. In this study, comprehensive analysis...
Kim, HyeRan, Hurwitz, Bonnie, Yu, Yeisoo, Collura, Kristi, Gill, Navdeep, SanMiguel, Phillip, ...
Bacterial artificial chromosome (BAC) fingerprint and end-sequenced physical maps representing the ten genome types of Oryza are presented