Contents Detailed Methods 2 Supplementary Table 5 (2009)
Illés J Farkas, Chuang Wu, Chakra Chennubhotla, Ivet Bahar, Zoltán N
basis of signal integration in the transcriptionalregulatory
Boross, Gábor, Orosz, Katalin, Farkas, Illés J.
Background: Short regulating RNAs guide many cellular processes. Compared with transcription factor proteins they appear to provide more specialized control and their deletions are less frequently...
BIOINFORMATICSAPPLICATIONS NOTE (2008)
Balázs Adamcsek, Gergely Palla, Illés J. Farkas, Imre Derényi, Tamás Vicsek
Data and text mining CFinder: locating cliques and overlapping modules in biological networks
New Journal of Physics The open–access journal for physics Directed network modules (2007)
Gergely Palla, Illés J Farkas, Péter Pollner, Imre Derényi, Tamás Vicsek
doi:10.1088/1367-2630/9/6/186 Abstract. A search technique locating network modules, i.e. internally densely connected groups of nodes in directed networks is introduced by extending the clique...
Farkas, Illés J, Wu, Chuang, Chennubhotla, Chakra, Bahar, Ivet, Oltvai, Zoltán N
Abstract Background Signal recognition and information processing is a fundamental cellular function, which in part involves comprehensive transcriptional regulatory (TR) mechanisms carried out in...
CFinder: locating cliques and overlapping modules in biological networks (2006)
Adamcsek, Balázs, Palla, Gergely, Farkas, Illés J., Derényi, Imre, Vicsek, Tamás
Summary: Most cellular tasks are performed not by individual proteins, but by groups of functionally associated proteins, often referred to as modules. In a protein assocation network modules appear...
Self-organizing pedestrian movement
Dirk Helbing, Péter Molnár, Illés J Farkas, Kai Bolay
Although pedestrians have individual preferences, aims, and destinations, the dynamics of pedestrian crowds is surprisingly predictable. Pedestrians can move freely only at small pedestrian...