Welcome To Regensburg, Richard Ambinder, Jen-yang Chen, Marilys Corbex, Dorothy Crawford, Riccardo Dolcetti, ...
You will find the venue close to the old town of Regensburg, one of the oldest townships of Germany with still visible portions of arches and walls from Roman times (100 – 200 AD) as integral part...
Epstein-Barr virus latency switch in human B-cells: a physico-chemical model (2007)
Werner, Maria, Ernberg, Ingemar, Zou, JieZhi, Almqvist, Jenny, Aurell, Erik
Abstract Background The Epstein-Barr virus is widespread in all human populations and is strongly associated with human disease, ranging from infectious mononucleosis to cancer. In infected cells the...
Polymorphisms of XRCC1 genes and risk of nasopharyngeal carcinoma in the Cantonese population (2006)
Cao, Yun, Miao, Xiao-Ping, Huang, Ma-Yan, Deng, Ling, Hu, Li-Fu, Ernberg, Ingemar, ...
Abstract Background Nasopharyngeal carcinoma (NPC) is one of the most common cancers in southern China. In addition to environmental factors such as Epstein-Barr virus infection and diet, genetic...
Van, Do Nguyen, Huang, Guangwu, Ernberg, Ingemar, Hu, Lifu
CDH13 encodes a cell adhesion molecule, H-cadherin. In this study, we examined CDH13 methylation in nasopharyngeal carcinoma (NPC). Methylation specific PCR results showed that CDH13 was methylated...
The molecular portrait of in vitrogrowth by meta-analysis of gene-expression profiles (2005)
Sandberg, Rickard, Ernberg, Ingemar
Abstract Background Cell lines as model systems of tumors and tissues are essential in molecular biology, although they only approximate the properties of in vivo cells in tissues. Cell lines have...
DNA-dependent conversion of Oct-1 and Oct-2 into transcriptional repressors by Groucho/TLE (2005)
Malin, Stephen, Linderson, Ylva, Almqvist, Jenny, Ernberg, Ingemar, Tallone, Tiziano, Pettersson, Sven
POU domain proteins contain a bipartite DNA-binding element that can confer allosteric control of coactivator recruitment. Dimerization of Oct-1 and Oct-2 on palindromic response elements results in...
NotI passporting to identify species composition of complex microbial systems (2003)
Zabarovska, Veronika, Kutsenko, Alexey S., Petrenko, Lev, Kilosanidze, Gelena, Ljungqvist, Olle, Norin, Elisabeth, ...
We describe here a new method for large‐scale scanning of microbial genomes on a quantitative and qualitative basis. To achieve this aim we propose to create NotI passports: databases containing...
Zabarovsky, Eugene R., Petrenko, Lev, Protopopov, Alexei, Vorontsova, Olga, Kutsenko, Alexey S., Zhao, Yanyan, ...
We have developed a new type of microarray, restriction site tagged (RST), for example NotI, microarrays. In this approach only sequences surrounding specific restriction sites (i.e. NotI linking...
A new approach to genome mapping and sequencing: slalom libraries (2002)
Zabarovska, Veronika I., Gizatullin, Rinat Z., Al-Amin, Ali N., Podowski, Raf, Protopopov, Alexei I., Löfdahl, Sven, ...
We describe here an efficient strategy for simultaneous genome mapping and sequencing. The approach is based on physically oriented, overlapping restriction fragment libraries called slalom...
Sequences Using a Naïve Bayesian Classifier (2001)
Rickard S, Gösta Winberg, Carl-ivar Bränden, Er Kaske, Ingemar Ernberg, Joakim Cöster, ...
service
Capturing Whole-Genome Characteristics in Short Sequences Using a Naive Bayesian Classifier (2001)
Sandberg, Rickard, Winberg, Gösta, Bränden, Carl-Ivar, Kaske, Alexander, Ernberg, Ingemar, Cöster, Joakim
NotI clones in the analysis of the human genome (2000)
Zabarovsky, Eugene R., Gizatullin, Rinat, Podowski, Raf M., Zabarovska, Veronika V., Xie, Li, Muravenko, Olga V., ...
NotI linking clones contain sequences flanking NotI recognition sites and were previously shown to be tightly associated with CpG islands and genes. To directly assess the value of NotI clones in...
Rajnavölgyi, Éva, Nagy, Noémi, Thuresson, Britt, Dosztányi, Zsuzsa, Simon, Ágnes, Simon, István, ...
Most human adults carry the Epstein–Barr virus (EBV) and develop immunological memory against the structural and the virus-encoded cellular proteins. The EBV nuclear antigen 6 (EBNA6) elicits...
A new approach to genome mapping and sequencing: slalom libraries
Zabarovska, Veronika I., Gizatullin, Rinat Z., Al-Amin, Ali N., Podowski, Raf, Protopopov, Alexei I., Löfdahl, Sven, ...
We describe here an efficient strategy for simultaneous genome mapping and sequencing. The approach is based on physically oriented, overlapping restriction fragment libraries called slalom...
Winberg, Gösta, Matskova, Liudmila, Chen, Fu, Plant, Pamela, Rotin, Daniela, Gish, Gerald, ...
The latent membrane protein (LMP) 2A of Epstein-Barr virus (EBV) is implicated in the maintenance of viral latency and appears to function in part by inhibiting B-cell receptor (BCR) signaling. The...
NotI clones in the analysis of the human genome
Zabarovsky, Eugene R., Gizatullin, Rinat, Podowski, Raf M., Zabarovska, Veronika V., Xie, Li, Muravenko, Olga V., ...
NotI linking clones contain sequences flanking NotI recognition sites and were previously shown to be tightly associated with CpG islands and genes. To directly assess the value of NotI clones in...
Falk, Kerstin I., Szekely, Laszlo, Aleman, Anna, Ernberg, Ingemar
The Epstein-Barr virus (EBV) can establish at least four different forms of latent infection. Previously, we have shown that the level of methylation of the EBV genome varies, depending on the form...
C-Terminal Domain of the Epstein-Barr Virus LMP2A Membrane Protein Contains a Clustering Signal
Matskova, Liudmila, Ernberg, Ingemar, Pawson, Tony, Winberg, Gösta
The latency-regulated transmembrane protein LMP2A interferes with signaling from the B-cell antigen receptor by recruiting the tyrosine kinases Lyn and Syk and by targeting them for degradation by...
Li, Jingfeng, Protopopov, Alexei, Wang, Fuli, Senchenko, Vera, Petushkov, Valentin, Vorontsova, Olga, ...
Methylation, deletions, and amplifications of cancer genes constitute important mechanisms in carcinogenesis. For genome-wide analysis of these changes, we propose the use of NotI clone microarrays...
NotI passporting to identify species composition of complex microbial systems
Zabarovska, Veronika, Kutsenko, Alexey S., Petrenko, Lev, Kilosanidze, Gelena, Ljungqvist, Olle, Norin, Elisabeth, ...
We describe here a new method for large-scale scanning of microbial genomes on a quantitative and qualitative basis. To achieve this aim we propose to create NotI passports: databases containing NotI...
Zabarovsky, Eugene R., Petrenko, Lev, Protopopov, Alexei, Vorontsova, Olga, Kutsenko, Alexey S., Zhao, Yanyan, ...
We have developed a new type of microarray, restriction site tagged (RST), for example NotI, microarrays. In this approach only sequences surrounding specific restriction sites (i.e. NotI linking...
Capturing Whole-Genome Characteristics in Short Sequences Using a Naïve Bayesian Classifier
Sandberg, Rickard, Winberg, Gösta, Bränden, Carl-Ivar, Kaske, Alexander, Ernberg, Ingemar, Cöster, Joakim
Bacterial genomes have diverged during evolution, resulting in clearcut differences in their nucleotide composition, such as their GC content. The analysis of complete sequences of bacterial genomes...
RBSP3 (HYA22) is a tumor suppressor gene implicated in major epithelial malignancies
Kashuba, Vladimir I., Li, Jingfeng, Wang, Fuli, Senchenko, Vera N., Protopopov, Alexey, Malyukova, Alena, ...
Chromosome 3p21.3 region is frequently (>90%) deleted in lung and other major human carcinomas. We subdivided 3p21.3 into LUCA and AP20 subregions and discovered frequent homozygous deletions...
Sandberg, Rickard, Ernberg, Ingemar
The gene expression profiles of 60 cell lines, derived from nine different tissues, were compared with their corresponding in vivo tumors and tissues. Cell lines expressed few tissue-specific (2%) or...
DNA-dependent conversion of Oct-1 and Oct-2 into transcriptional repressors by Groucho/TLE
Malin, Stephen, Linderson, Ylva, Almqvist, Jenny, Ernberg, Ingemar, Tallone, Tiziano, Pettersson, Sven
POU domain proteins contain a bipartite DNA-binding element that can confer allosteric control of coactivator recruitment. Dimerization of Oct-1 and Oct-2 on palindromic response elements results in...
WW Domains Provide a Platform for the Assembly of Multiprotein Networks†
Ingham, Robert J., Colwill, Karen, Howard, Caley, Dettwiler, Sabine, Lim, Caesar S. H., Yu, Joanna, ...
WW domains are protein modules that mediate protein-protein interactions through recognition of proline-rich peptide motifs and phosphorylated serine/threonine-proline sites. To pursue the functional...
The molecular portrait of in vitro growth by meta-analysis of gene-expression profiles
Sandberg, Rickard, Ernberg, Ingemar
A meta analysis comparing 60 tumor cell lines, 135 normal tissue samples and 176 tumor tissue samples in humans shows significant differential expression between cell lines and tissues of around 30%...
Genomic Sequence Analysis of Epstein-Barr Virus Strain GD1 from a Nasopharyngeal Carcinoma Patient†
Zeng, Mu-Sheng, Li, Da-Jiang, Liu, Qing-Lun, Song, Li-Bing, Li, Man-Zhi, Zhang, Ru-Hua, ...
To date, the only entire Epstein-Barr virus (EBV) genomic sequence available in the database is the prototype B95.8, which was derived from an individual with infectious mononucleosis. A causative...
Polymorphisms of XRCC1 genes and risk of nasopharyngeal carcinoma in the Cantonese population
Cao, Yun, Miao, Xiao-Ping, Huang, Ma-Yan, Deng, Ling, Hu, Li-Fu, Ernberg, Ingemar, ...
A new approach to genome mapping and sequencing: slalom libraries
Zabarovska, Veronika I., Gizatullin, Rinat Z., Al-Amin, Ali N., Podowski, Raf, Protopopov, Alexei I., Löfdahl, Sven, ...
We describe here an efficient strategy for simultaneous genome mapping and sequencing. The approach is based on physically oriented, overlapping restriction fragment libraries called slalom...
Winberg, Gösta, Matskova, Liudmila, Chen, Fu, Plant, Pamela, Rotin, Daniela, Gish, Gerald, ...
The latent membrane protein (LMP) 2A of Epstein-Barr virus (EBV) is implicated in the maintenance of viral latency and appears to function in part by inhibiting B-cell receptor (BCR) signaling. The...
NotI clones in the analysis of the human genome
Zabarovsky, Eugene R., Gizatullin, Rinat, Podowski, Raf M., Zabarovska, Veronika V., Xie, Li, Muravenko, Olga V., ...
NotI linking clones contain sequences flanking NotI recognition sites and were previously shown to be tightly associated with CpG islands and genes. To directly assess the value of NotI clones in...
Falk, Kerstin I., Szekely, Laszlo, Aleman, Anna, Ernberg, Ingemar
The Epstein-Barr virus (EBV) can establish at least four different forms of latent infection. Previously, we have shown that the level of methylation of the EBV genome varies, depending on the form...
C-Terminal Domain of the Epstein-Barr Virus LMP2A Membrane Protein Contains a Clustering Signal
Matskova, Liudmila, Ernberg, Ingemar, Pawson, Tony, Winberg, Gösta
The latency-regulated transmembrane protein LMP2A interferes with signaling from the B-cell antigen receptor by recruiting the tyrosine kinases Lyn and Syk and by targeting them for degradation by...
Li, Jingfeng, Protopopov, Alexei, Wang, Fuli, Senchenko, Vera, Petushkov, Valentin, Vorontsova, Olga, ...
Methylation, deletions, and amplifications of cancer genes constitute important mechanisms in carcinogenesis. For genome-wide analysis of these changes, we propose the use of NotI clone microarrays...
NotI passporting to identify species composition of complex microbial systems
Zabarovska, Veronika, Kutsenko, Alexey S., Petrenko, Lev, Kilosanidze, Gelena, Ljungqvist, Olle, Norin, Elisabeth, ...
We describe here a new method for large-scale scanning of microbial genomes on a quantitative and qualitative basis. To achieve this aim we propose to create NotI passports: databases containing NotI...
Zabarovsky, Eugene R., Petrenko, Lev, Protopopov, Alexei, Vorontsova, Olga, Kutsenko, Alexey S., Zhao, Yanyan, ...
We have developed a new type of microarray, restriction site tagged (RST), for example NotI, microarrays. In this approach only sequences surrounding specific restriction sites (i.e. NotI linking...
Capturing Whole-Genome Characteristics in Short Sequences Using a Naïve Bayesian Classifier
Sandberg, Rickard, Winberg, Gösta, Bränden, Carl-Ivar, Kaske, Alexander, Ernberg, Ingemar, Cöster, Joakim
Bacterial genomes have diverged during evolution, resulting in clearcut differences in their nucleotide composition, such as their GC content. The analysis of complete sequences of bacterial genomes...
RBSP3 (HYA22) is a tumor suppressor gene implicated in major epithelial malignancies
Kashuba, Vladimir I., Li, Jingfeng, Wang, Fuli, Senchenko, Vera N., Protopopov, Alexey, Malyukova, Alena, ...
Chromosome 3p21.3 region is frequently (>90%) deleted in lung and other major human carcinomas. We subdivided 3p21.3 into LUCA and AP20 subregions and discovered frequent homozygous deletions...
Sandberg, Rickard, Ernberg, Ingemar
The gene expression profiles of 60 cell lines, derived from nine different tissues, were compared with their corresponding in vivo tumors and tissues. Cell lines expressed few tissue-specific (2%) or...
DNA-dependent conversion of Oct-1 and Oct-2 into transcriptional repressors by Groucho/TLE
Malin, Stephen, Linderson, Ylva, Almqvist, Jenny, Ernberg, Ingemar, Tallone, Tiziano, Pettersson, Sven
POU domain proteins contain a bipartite DNA-binding element that can confer allosteric control of coactivator recruitment. Dimerization of Oct-1 and Oct-2 on palindromic response elements results in...
WW Domains Provide a Platform for the Assembly of Multiprotein Networks†
Ingham, Robert J., Colwill, Karen, Howard, Caley, Dettwiler, Sabine, Lim, Caesar S. H., Yu, Joanna, ...
WW domains are protein modules that mediate protein-protein interactions through recognition of proline-rich peptide motifs and phosphorylated serine/threonine-proline sites. To pursue the functional...
The molecular portrait of in vitro growth by meta-analysis of gene-expression profiles
Sandberg, Rickard, Ernberg, Ingemar
A meta analysis comparing 60 tumor cell lines, 135 normal tissue samples and 176 tumor tissue samples in humans shows significant differential expression between cell lines and tissues of around 30%...
Genomic Sequence Analysis of Epstein-Barr Virus Strain GD1 from a Nasopharyngeal Carcinoma Patient†
Zeng, Mu-Sheng, Li, Da-Jiang, Liu, Qing-Lun, Song, Li-Bing, Li, Man-Zhi, Zhang, Ru-Hua, ...
To date, the only entire Epstein-Barr virus (EBV) genomic sequence available in the database is the prototype B95.8, which was derived from an individual with infectious mononucleosis. A causative...
Polymorphisms of XRCC1 genes and risk of nasopharyngeal carcinoma in the Cantonese population
Cao, Yun, Miao, Xiao-Ping, Huang, Ma-Yan, Deng, Ling, Hu, Li-Fu, Ernberg, Ingemar, ...
Epstein-Barr virus latency switch in human B-cells: a physico-chemical model
Werner, Maria, Ernberg, Ingemar, Zou, JieZhi, Almqvist, Jenny, Aurell, Erik
Baumforth, Karl R.N., Birgersdotter, Anna, Reynolds, Gary M., Wei, Wenbin, Kapatai, Georgia, Flavell, Joanne R., ...
In ∼50% of patients with Hodgkin’s lymphoma (HL), the Epstein-Barr virus (EBV), an oncogenic herpesvirus, is present in tumor cells. After microarray profiling of both HL tumors and cell lines,...